Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 AC007744.1-201ENST00000607540 2289 ntTSL 5 BASIC7.22□□□□□ -1.25
VPS9D1Q9Y2B5 NRCAM-204ENST00000379028 6685 ntAPPRIS ALT2 TSL 5 BASIC7.22□□□□□ -1.25
VPS9D1Q9Y2B5 PGK2-201ENST00000304801 1657 ntAPPRIS P1 BASIC7.22□□□□□ -1.25
VPS9D1Q9Y2B5 RBM41-201ENST00000372479 1662 ntAPPRIS P3 TSL 1 (best) BASIC7.22□□□□□ -1.25
VPS9D1Q9Y2B5 SMAD1-202ENST00000394092 1658 ntAPPRIS P1 TSL 1 (best) BASIC7.22□□□□□ -1.25
VPS9D1Q9Y2B5 KALRN-204ENST00000360013 10806 ntAPPRIS P5 TSL 5 BASIC7.22□□□□□ -1.25
VPS9D1Q9Y2B5 CASP10-203ENST00000313728 1521 ntTSL 1 (best) BASIC7.22□□□□□ -1.25
VPS9D1Q9Y2B5 CPSF6-202ENST00000435070 6616 ntAPPRIS P1 TSL 1 (best) BASIC7.22□□□□□ -1.25
VPS9D1Q9Y2B5 GAPVD1-202ENST00000297933 6003 ntAPPRIS ALT2 TSL 1 (best) BASIC7.22□□□□□ -1.25
VPS9D1Q9Y2B5 NUDT13-206ENST00000537969 2151 ntTSL 2 BASIC7.22□□□□□ -1.25
VPS9D1Q9Y2B5 TCF4-225ENST00000564999 3590 ntAPPRIS P3 TSL 5 BASIC7.22□□□□□ -1.25
VPS9D1Q9Y2B5 AC074029.4-201ENST00000624796 1859 ntBASIC7.22□□□□□ -1.25
VPS9D1Q9Y2B5 PSG1-203ENST00000403380 1722 ntTSL 2 BASIC7.22□□□□□ -1.25
VPS9D1Q9Y2B5 GPN1-203ENST00000424214 1725 ntTSL 2 BASIC7.22□□□□□ -1.25
VPS9D1Q9Y2B5 AL049634.1-201ENST00000453770 1720 ntBASIC7.22□□□□□ -1.25
VPS9D1Q9Y2B5 SOX6-208ENST00000527619 2699 ntAPPRIS ALT2 TSL 1 (best) BASIC7.22□□□□□ -1.25
VPS9D1Q9Y2B5 EEF1A1P16-201ENST00000325349 1414 ntBASIC7.22□□□□□ -1.25
VPS9D1Q9Y2B5 NR5A2-206ENST00000544748 4775 ntAPPRIS ALT1 TSL 2 BASIC7.22□□□□□ -1.25
VPS9D1Q9Y2B5 RNA5-8SP7-201ENST00000363443 155 ntBASIC7.22□□□□□ -1.25
VPS9D1Q9Y2B5 MRPS6P2-201ENST00000381143 370 ntBASIC7.22□□□□□ -1.25
VPS9D1Q9Y2B5 RNU6-95P-201ENST00000384697 107 ntBASIC7.22□□□□□ -1.25
VPS9D1Q9Y2B5 RPL9P21-201ENST00000392269 505 ntBASIC7.22□□□□□ -1.25
VPS9D1Q9Y2B5 AL590290.1-201ENST00000405336 380 ntBASIC7.22□□□□□ -1.25
VPS9D1Q9Y2B5 Y_RNA.629-201ENST00000411368 105 ntBASIC7.22□□□□□ -1.25
VPS9D1Q9Y2B5 AC009237.9-201ENST00000414800 347 ntBASIC7.22□□□□□ -1.25
VPS9D1Q9Y2B5 AL513164.1-201ENST00000423268 311 ntTSL 3 BASIC7.22□□□□□ -1.25
VPS9D1Q9Y2B5 AC004870.2-202ENST00000423781 706 ntTSL 3 BASIC7.22□□□□□ -1.25
VPS9D1Q9Y2B5 AL357552.2-201ENST00000433876 353 ntTSL 5 BASIC7.22□□□□□ -1.25
VPS9D1Q9Y2B5 HIST1H2APS6-201ENST00000448609 364 ntBASIC7.22□□□□□ -1.25
VPS9D1Q9Y2B5 AC019080.2-201ENST00000453859 394 ntBASIC7.22□□□□□ -1.25
VPS9D1Q9Y2B5 SCARNA18-201ENST00000459004 134 ntBASIC7.22□□□□□ -1.25
VPS9D1Q9Y2B5 AC046136.1-201ENST00000459855 533 ntTSL 3 BASIC7.22□□□□□ -1.25
VPS9D1Q9Y2B5 FTH1P2-201ENST00000466086 412 ntBASIC7.22□□□□□ -1.25
VPS9D1Q9Y2B5 AC011476.1-201ENST00000466725 307 ntBASIC7.22□□□□□ -1.25
VPS9D1Q9Y2B5 AC026801.1-201ENST00000497178 464 ntBASIC7.22□□□□□ -1.25
VPS9D1Q9Y2B5 HMGN1P16-201ENST00000508308 283 ntBASIC7.22□□□□□ -1.25
VPS9D1Q9Y2B5 AC008716.1-201ENST00000511084 513 ntBASIC7.22□□□□□ -1.25
VPS9D1Q9Y2B5 AC097103.2-205ENST00000515247 567 ntTSL 4 BASIC7.22□□□□□ -1.25
VPS9D1Q9Y2B5 RNU6-861P-201ENST00000516745 106 ntBASIC7.22□□□□□ -1.25
VPS9D1Q9Y2B5 AC022039.1-201ENST00000527110 488 ntTSL 2 BASIC7.22□□□□□ -1.25
VPS9D1Q9Y2B5 PHBP2-201ENST00000532859 806 ntBASIC7.22□□□□□ -1.25
VPS9D1Q9Y2B5 LINC02408-202ENST00000538573 559 ntTSL 4 BASIC7.22□□□□□ -1.25
VPS9D1Q9Y2B5 AC007948.1-201ENST00000581632 242 ntTSL 5 BASIC7.22□□□□□ -1.25
VPS9D1Q9Y2B5 SNORD39.3-201ENST00000584451 71 ntBASIC7.22□□□□□ -1.25
VPS9D1Q9Y2B5 AC005244.2-201ENST00000585228 718 ntTSL 3 BASIC7.22□□□□□ -1.25
VPS9D1Q9Y2B5 AP001120.4-201ENST00000590231 108 ntBASIC7.22□□□□□ -1.25
VPS9D1Q9Y2B5 AL161423.1-201ENST00000613700 262 ntBASIC7.22□□□□□ -1.25
VPS9D1Q9Y2B5 EFCAB8-204ENST00000618684 435 ntTSL 5 BASIC7.22□□□□□ -1.25
VPS9D1Q9Y2B5 LINC00923-207ENST00000619015 505 ntTSL 5 BASIC7.22□□□□□ -1.25
VPS9D1Q9Y2B5 AC130448.2-201ENST00000624082 374 ntBASIC7.22□□□□□ -1.25
VPS9D1Q9Y2B5 PRKACB-201ENST00000370680 1914 ntTSL 1 (best) BASIC7.22□□□□□ -1.25
VPS9D1Q9Y2B5 DNA2-203ENST00000399180 3207 ntTSL 2 BASIC7.22□□□□□ -1.25
VPS9D1Q9Y2B5 RASSF9-201ENST00000361228 5682 ntAPPRIS P1 TSL 1 (best) BASIC7.22□□□□□ -1.25
VPS9D1Q9Y2B5 LRFN5-203ENST00000554120 2121 ntAPPRIS ALT2 TSL 5 BASIC7.22□□□□□ -1.25
VPS9D1Q9Y2B5 ADA2-201ENST00000262607 3925 ntAPPRIS P3 TSL 1 (best) BASIC7.22□□□□□ -1.25
VPS9D1Q9Y2B5 AC110716.2-201ENST00000563865 3945 ntBASIC7.22□□□□□ -1.25
VPS9D1Q9Y2B5 NCOA6-202ENST00000374796 9311 ntAPPRIS P3 TSL 1 (best) BASIC7.22□□□□□ -1.25
VPS9D1Q9Y2B5 SMC1A-201ENST00000322213 9784 ntAPPRIS P1 TSL 1 (best) BASIC7.22□□□□□ -1.25
VPS9D1Q9Y2B5 METTL21EP-202ENST00000605100 2312 ntTSL 2 BASIC7.22□□□□□ -1.25
VPS9D1Q9Y2B5 ENSA-201ENST00000271690 2818 ntAPPRIS ALT1 TSL 1 (best) BASIC7.22□□□□□ -1.25
VPS9D1Q9Y2B5 PSG1-205ENST00000595124 1692 ntTSL 2 BASIC7.22□□□□□ -1.25
VPS9D1Q9Y2B5 LRRTM3-201ENST00000361320 4358 ntAPPRIS P1 TSL 1 (best) BASIC7.22□□□□□ -1.25
VPS9D1Q9Y2B5 GABRG2-228ENST00000640985 3086 ntTSL 5 BASIC7.21□□□□□ -1.25
VPS9D1Q9Y2B5 DRP2-204ENST00000538510 6852 ntAPPRIS P3 TSL 2 BASIC7.21□□□□□ -1.25
VPS9D1Q9Y2B5 KCNA2-208ENST00000638616 3279 ntAPPRIS P1 TSL 5 BASIC7.21□□□□□ -1.25
VPS9D1Q9Y2B5 ESRRG-201ENST00000359162 5197 ntAPPRIS P1 TSL 1 (best) BASIC7.21□□□□□ -1.25
VPS9D1Q9Y2B5 MUSK-205ENST00000374448 2754 ntAPPRIS P1 TSL 5 BASIC7.21□□□□□ -1.25
VPS9D1Q9Y2B5 CCDC80-201ENST00000206423 12430 ntAPPRIS P1 TSL 1 (best) BASIC7.21□□□□□ -1.25
VPS9D1Q9Y2B5 FHL5-203ENST00000541107 1904 ntAPPRIS P1 TSL 1 (best) BASIC7.21□□□□□ -1.25
VPS9D1Q9Y2B5 AC096921.2-201ENST00000561507 1916 ntBASIC7.21□□□□□ -1.25
VPS9D1Q9Y2B5 LEPR-203ENST00000371058 2805 ntTSL 5 BASIC7.21□□□□□ -1.25
VPS9D1Q9Y2B5 LINC02073-201ENST00000588341 2845 ntTSL 2 BASIC7.21□□□□□ -1.25
VPS9D1Q9Y2B5 DLG2-209ENST00000418306 3027 ntTSL 2 BASIC7.21□□□□□ -1.25
VPS9D1Q9Y2B5 EIF3L-203ENST00000412331 3220 ntTSL 1 (best) BASIC7.21□□□□□ -1.26
VPS9D1Q9Y2B5 CACHD1-201ENST00000290039 5275 ntAPPRIS P1 TSL 5 BASIC7.21□□□□□ -1.26
VPS9D1Q9Y2B5 IGKV3D-11-201ENST00000390277 444 ntAPPRIS P1 BASIC7.21□□□□□ -1.26
VPS9D1Q9Y2B5 A2ML1-AS2-201ENST00000394240 386 ntTSL 5 BASIC7.21□□□□□ -1.26
VPS9D1Q9Y2B5 HMGB1P20-201ENST00000402555 677 ntBASIC7.21□□□□□ -1.26
VPS9D1Q9Y2B5 AC109638.1-201ENST00000417406 326 ntBASIC7.21□□□□□ -1.26
VPS9D1Q9Y2B5 CD33-203ENST00000421133 1023 ntTSL 1 (best) BASIC7.21□□□□□ -1.26
VPS9D1Q9Y2B5 UQCRHP1-204ENST00000424609 274 ntBASIC7.21□□□□□ -1.26
VPS9D1Q9Y2B5 RPL7P46-201ENST00000425129 740 ntBASIC7.21□□□□□ -1.26
VPS9D1Q9Y2B5 AC092651.1-201ENST00000426110 312 ntBASIC7.21□□□□□ -1.26
VPS9D1Q9Y2B5 NOTCH2P1-201ENST00000443481 624 ntBASIC7.21□□□□□ -1.26
VPS9D1Q9Y2B5 LINC01006-207ENST00000458645 738 ntTSL 4 BASIC7.21□□□□□ -1.26
VPS9D1Q9Y2B5 LINC00881-201ENST00000467995 589 ntTSL 4 BASIC7.21□□□□□ -1.26
VPS9D1Q9Y2B5 RN7SL228P-201ENST00000470060 303 ntBASIC7.21□□□□□ -1.26
VPS9D1Q9Y2B5 RN7SL314P-201ENST00000490735 292 ntBASIC7.21□□□□□ -1.26
VPS9D1Q9Y2B5 RPS26P24-201ENST00000497656 331 ntBASIC7.21□□□□□ -1.26
VPS9D1Q9Y2B5 AC106774.2-201ENST00000510266 406 ntBASIC7.21□□□□□ -1.26
VPS9D1Q9Y2B5 FTH1P21-201ENST00000512179 511 ntBASIC7.21□□□□□ -1.26
VPS9D1Q9Y2B5 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC7.21□□□□□ -1.26
VPS9D1Q9Y2B5 HIGD1AP5-201ENST00000529959 259 ntBASIC7.21□□□□□ -1.26
VPS9D1Q9Y2B5 SNHG1-208ENST00000538266 347 ntTSL 3 BASIC7.21□□□□□ -1.26
VPS9D1Q9Y2B5 OR4N2-203ENST00000557677 1008 ntAPPRIS P1 BASIC7.21□□□□□ -1.26
VPS9D1Q9Y2B5 AC092868.2-201ENST00000558749 497 ntTSL 3 BASIC7.21□□□□□ -1.26
VPS9D1Q9Y2B5 PCAT29-202ENST00000558941 545 ntTSL 4 BASIC7.21□□□□□ -1.26
VPS9D1Q9Y2B5 SLC25A3P1-203ENST00000563752 460 ntTSL 2 BASIC7.21□□□□□ -1.26
VPS9D1Q9Y2B5 RN7SL366P-201ENST00000577957 292 ntBASIC7.21□□□□□ -1.26
VPS9D1Q9Y2B5 AC011824.2-203ENST00000579975 633 ntTSL 3 BASIC7.21□□□□□ -1.26
Retrieved 100 of 98,524 protein–RNA pairs in 93.3 ms