Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 MTCO1P54-201ENST00000430139 712 ntBASIC4.9□□□□□ -1.63
VPS4AQ9UN37 YWHAZP7-201ENST00000436906 631 ntBASIC4.9□□□□□ -1.63
VPS4AQ9UN37 RPS29P10-201ENST00000439197 166 ntBASIC4.9□□□□□ -1.63
VPS4AQ9UN37 AL138878.2-201ENST00000440581 1241 ntBASIC4.9□□□□□ -1.63
VPS4AQ9UN37 RPS7P5-201ENST00000441482 581 ntBASIC4.9□□□□□ -1.63
VPS4AQ9UN37 PRR16-203ENST00000446965 1152 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
VPS4AQ9UN37 ZNF736P5Y-201ENST00000451173 805 ntBASIC4.9□□□□□ -1.63
VPS4AQ9UN37 PLCE1-AS2-205ENST00000453183 427 ntTSL 5 BASIC4.9□□□□□ -1.63
VPS4AQ9UN37 AL133477.1-201ENST00000457472 514 ntBASIC4.9□□□□□ -1.63
VPS4AQ9UN37 AC073218.1-201ENST00000458413 171 ntTSL 5 BASIC4.9□□□□□ -1.63
VPS4AQ9UN37 AC010789.1-201ENST00000458489 291 ntTSL 5 BASIC4.9□□□□□ -1.63
VPS4AQ9UN37 AC091180.1-201ENST00000462104 372 ntBASIC4.9□□□□□ -1.63
VPS4AQ9UN37 AC009127.1-201ENST00000467090 155 ntBASIC4.9□□□□□ -1.63
VPS4AQ9UN37 BX284632.1-201ENST00000478218 541 ntBASIC4.9□□□□□ -1.63
VPS4AQ9UN37 RPS4XP20-201ENST00000505751 772 ntBASIC4.9□□□□□ -1.63
VPS4AQ9UN37 MTCO3P28-201ENST00000513351 515 ntBASIC4.9□□□□□ -1.63
VPS4AQ9UN37 LINC00534-201ENST00000517400 793 ntTSL 2 BASIC4.9□□□□□ -1.63
VPS4AQ9UN37 MAL2-208ENST00000523307 556 ntTSL 4 BASIC4.9□□□□□ -1.63
VPS4AQ9UN37 OR5AZ1P-201ENST00000527448 943 ntBASIC4.9□□□□□ -1.63
VPS4AQ9UN37 AP000619.3-201ENST00000535634 1127 ntBASIC4.9□□□□□ -1.63
VPS4AQ9UN37 AC084291.1-201ENST00000544667 548 ntTSL 2 BASIC4.9□□□□□ -1.63
VPS4AQ9UN37 LINC02443-204ENST00000544717 754 ntTSL 5 BASIC4.9□□□□□ -1.63
VPS4AQ9UN37 AC089983.1-201ENST00000549807 701 ntTSL 3 BASIC4.9□□□□□ -1.63
VPS4AQ9UN37 AC144548.2-201ENST00000550231 946 ntTSL 3 BASIC4.9□□□□□ -1.63
VPS4AQ9UN37 AL356804.1-201ENST00000553791 448 ntTSL 5 BASIC4.9□□□□□ -1.63
VPS4AQ9UN37 AP005136.1-201ENST00000579765 429 ntBASIC4.9□□□□□ -1.63
VPS4AQ9UN37 AL358072.1-201ENST00000604156 575 ntBASIC4.9□□□□□ -1.63
VPS4AQ9UN37 AC121247.2-201ENST00000604776 136 ntBASIC4.9□□□□□ -1.63
VPS4AQ9UN37 AC245008.1-201ENST00000608123 476 ntBASIC4.9□□□□□ -1.63
VPS4AQ9UN37 BX005214.3-202ENST00000619809 325 ntBASIC4.9□□□□□ -1.63
VPS4AQ9UN37 AC022509.4-201ENST00000621404 572 ntBASIC4.9□□□□□ -1.63
VPS4AQ9UN37 SPART-202ENST00000438666 4789 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.63
VPS4AQ9UN37 SMG1P3-204ENST00000520823 3194 ntTSL 5 BASIC4.9□□□□□ -1.63
VPS4AQ9UN37 TOX-201ENST00000361421 4131 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.63
VPS4AQ9UN37 AC100778.3-201ENST00000580060 1750 ntBASIC4.9□□□□□ -1.63
VPS4AQ9UN37 VCAM1-202ENST00000347652 2812 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
VPS4AQ9UN37 ATF7IP-209ENST00000536444 8774 ntAPPRIS ALT2 TSL 1 (best) BASIC4.9□□□□□ -1.63
VPS4AQ9UN37 IFI16-203ENST00000359709 2609 ntAPPRIS ALT2 TSL 2 BASIC4.9□□□□□ -1.63
VPS4AQ9UN37 SPINK5-202ENST00000359874 3656 ntAPPRIS ALT2 TSL 1 (best) BASIC4.9□□□□□ -1.63
VPS4AQ9UN37 OR10A3-202ENST00000642047 2650 ntAPPRIS P1 BASIC4.9□□□□□ -1.63
VPS4AQ9UN37 RAD51AP1-201ENST00000228843 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC4.89□□□□□ -1.63
VPS4AQ9UN37 AC107027.3-201ENST00000565095 3473 ntBASIC4.89□□□□□ -1.63
VPS4AQ9UN37 AP000776.1-201ENST00000530032 1663 ntBASIC4.89□□□□□ -1.63
VPS4AQ9UN37 GABRA1-220ENST00000638159 4088 ntTSL 5 BASIC4.89□□□□□ -1.63
VPS4AQ9UN37 VIRMA-201ENST00000297591 6528 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
VPS4AQ9UN37 POLK-204ENST00000504026 1484 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
VPS4AQ9UN37 RASAL2-203ENST00000462775 14453 ntAPPRIS ALT2 TSL 1 (best) BASIC4.89□□□□□ -1.63
VPS4AQ9UN37 AL355852.1-201ENST00000454081 1771 ntBASIC4.89□□□□□ -1.63
VPS4AQ9UN37 OR10A5-201ENST00000299454 1054 ntAPPRIS P1 BASIC4.89□□□□□ -1.63
VPS4AQ9UN37 KRTAP27-1-201ENST00000382835 682 ntAPPRIS P1 BASIC4.89□□□□□ -1.63
VPS4AQ9UN37 MIR217-201ENST00000384817 110 ntBASIC4.89□□□□□ -1.63
VPS4AQ9UN37 TRAV12-2-201ENST00000390437 445 ntAPPRIS P1 BASIC4.89□□□□□ -1.63
VPS4AQ9UN37 MIR1271-201ENST00000408537 86 ntBASIC4.89□□□□□ -1.63
VPS4AQ9UN37 MORF4L1P6-201ENST00000418771 268 ntBASIC4.89□□□□□ -1.63
VPS4AQ9UN37 AL390036.1-201ENST00000419428 734 ntTSL 5 BASIC4.89□□□□□ -1.63
VPS4AQ9UN37 PAICSP7-201ENST00000419829 962 ntBASIC4.89□□□□□ -1.63
VPS4AQ9UN37 PTP4A1P5-201ENST00000420305 455 ntBASIC4.89□□□□□ -1.63
VPS4AQ9UN37 AL390962.1-201ENST00000421507 526 ntTSL 3 BASIC4.89□□□□□ -1.63
VPS4AQ9UN37 MTND4P20-201ENST00000424125 869 ntBASIC4.89□□□□□ -1.63
VPS4AQ9UN37 AF230666.1-201ENST00000429151 786 ntTSL 2 BASIC4.89□□□□□ -1.63
VPS4AQ9UN37 RPL21P110-201ENST00000433345 446 ntBASIC4.89□□□□□ -1.63
VPS4AQ9UN37 GTF3AP5-201ENST00000442645 697 ntBASIC4.89□□□□□ -1.63
VPS4AQ9UN37 AL356421.2-201ENST00000446733 197 ntTSL 3 BASIC4.89□□□□□ -1.63
VPS4AQ9UN37 HMGB1P16-201ENST00000447155 540 ntBASIC4.89□□□□□ -1.63
VPS4AQ9UN37 RPL21P134-201ENST00000453468 483 ntBASIC4.89□□□□□ -1.63
VPS4AQ9UN37 AC007000.3-201ENST00000459742 617 ntTSL 3 BASIC4.89□□□□□ -1.63
VPS4AQ9UN37 RPL5P24-201ENST00000463742 885 ntBASIC4.89□□□□□ -1.63
VPS4AQ9UN37 AC097173.1-201ENST00000505862 819 ntBASIC4.89□□□□□ -1.63
VPS4AQ9UN37 OR5BM1P-201ENST00000512021 366 ntBASIC4.89□□□□□ -1.63
VPS4AQ9UN37 snoU109.6-201ENST00000516831 118 ntBASIC4.89□□□□□ -1.63
VPS4AQ9UN37 HMGB1P23-201ENST00000518743 568 ntBASIC4.89□□□□□ -1.63
VPS4AQ9UN37 AP001317.1-201ENST00000531194 960 ntBASIC4.89□□□□□ -1.63
VPS4AQ9UN37 AC022882.1-201ENST00000532142 501 ntBASIC4.89□□□□□ -1.63
VPS4AQ9UN37 SAMD15-202ENST00000533095 412 ntTSL 5 BASIC4.89□□□□□ -1.63
VPS4AQ9UN37 AC117377.1-201ENST00000547633 1038 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
VPS4AQ9UN37 AC090888.1-201ENST00000561335 1141 ntBASIC4.89□□□□□ -1.63
VPS4AQ9UN37 AL031600.2-201ENST00000563223 307 ntTSL 5 BASIC4.89□□□□□ -1.63
VPS4AQ9UN37 AL035071.2-201ENST00000565572 459 ntTSL 3 BASIC4.89□□□□□ -1.63
VPS4AQ9UN37 BPTFP1-201ENST00000579209 492 ntBASIC4.89□□□□□ -1.63
VPS4AQ9UN37 AC090312.2-201ENST00000582687 378 ntBASIC4.89□□□□□ -1.63
VPS4AQ9UN37 AC002128.2-201ENST00000604161 618 ntTSL 5 BASIC4.89□□□□□ -1.63
VPS4AQ9UN37 AL022161.1-201ENST00000604390 213 ntBASIC4.89□□□□□ -1.63
VPS4AQ9UN37 AL158042.1-201ENST00000605338 460 ntBASIC4.89□□□□□ -1.63
VPS4AQ9UN37 AP004247.3-201ENST00000608682 624 ntBASIC4.89□□□□□ -1.63
VPS4AQ9UN37 EAF1-AS1-211ENST00000610011 316 ntTSL 5 BASIC4.89□□□□□ -1.63
VPS4AQ9UN37 SHMT1-211ENST00000618902 378 ntTSL 5 BASIC4.89□□□□□ -1.63
VPS4AQ9UN37 TEX41-254ENST00000626394 423 ntTSL 5 BASIC4.89□□□□□ -1.63
VPS4AQ9UN37 LINC01619-203ENST00000549802 2169 ntTSL 2 BASIC4.89□□□□□ -1.63
VPS4AQ9UN37 ATP7A-202ENST00000343533 8289 ntTSL 5 BASIC4.89□□□□□ -1.63
VPS4AQ9UN37 AL513185.3-201ENST00000433335 1300 ntBASIC4.89□□□□□ -1.63
VPS4AQ9UN37 SMAD4-202ENST00000398417 8495 ntAPPRIS P1 TSL 5 BASIC4.89□□□□□ -1.63
VPS4AQ9UN37 SLC10A7-203ENST00000432059 3747 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
VPS4AQ9UN37 GHR-202ENST00000357703 4316 ntTSL 5 BASIC4.89□□□□□ -1.63
VPS4AQ9UN37 EIF2AK2-201ENST00000233057 10042 ntAPPRIS P1 TSL 2 BASIC4.89□□□□□ -1.63
VPS4AQ9UN37 OR10K1-203ENST00000641432 3775 ntAPPRIS P1 BASIC4.89□□□□□ -1.63
VPS4AQ9UN37 ASNSP1-204ENST00000641977 1664 ntBASIC4.89□□□□□ -1.63
VPS4AQ9UN37 FAM26D-201ENST00000368596 1353 ntAPPRIS P1 TSL 5 BASIC4.89□□□□□ -1.63
VPS4AQ9UN37 IRAK4-203ENST00000448290 1381 ntTSL 5 BASIC4.89□□□□□ -1.63
VPS4AQ9UN37 ZNF273-204ENST00000476120 2000 ntAPPRIS P1 TSL 3 BASIC4.89□□□□□ -1.63
VPS4AQ9UN37 CASP10-204ENST00000346817 3926 ntAPPRIS ALT2 TSL 5 BASIC4.89□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 111.8 ms