Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 AC110275.1-201ENST00000534420 623 ntAPPRIS P1 TSL 4 BASIC6.4□□□□□ -1.38
CCDC39Q9UFE4 AP003037.1-201ENST00000537594 267 ntTSL 5 BASIC6.4□□□□□ -1.38
CCDC39Q9UFE4 LINC00944-203ENST00000542248 548 ntTSL 4 BASIC6.4□□□□□ -1.38
CCDC39Q9UFE4 AC007406.1-201ENST00000544067 315 ntTSL 3 BASIC6.4□□□□□ -1.38
CCDC39Q9UFE4 LINC02305-201ENST00000554142 476 ntTSL 3 BASIC6.4□□□□□ -1.38
CCDC39Q9UFE4 AL163932.1-201ENST00000555776 542 ntTSL 4 BASIC6.4□□□□□ -1.38
CCDC39Q9UFE4 AC087477.4-201ENST00000560586 542 ntTSL 4 BASIC6.4□□□□□ -1.38
CCDC39Q9UFE4 POU1F1-203ENST00000560656 647 ntTSL 5 BASIC6.4□□□□□ -1.38
CCDC39Q9UFE4 RPS3AP23-202ENST00000574601 686 ntBASIC6.4□□□□□ -1.38
CCDC39Q9UFE4 MIR3912-201ENST00000577566 105 ntBASIC6.4□□□□□ -1.38
CCDC39Q9UFE4 RN7SL290P-201ENST00000578661 300 ntBASIC6.4□□□□□ -1.38
CCDC39Q9UFE4 NUFIP2-202ENST00000579665 559 ntTSL 1 (best) BASIC6.4□□□□□ -1.38
CCDC39Q9UFE4 MIR4472-2-201ENST00000582069 67 ntBASIC6.4□□□□□ -1.38
CCDC39Q9UFE4 AC024267.4-202ENST00000582631 436 ntTSL 2 BASIC6.4□□□□□ -1.38
CCDC39Q9UFE4 AL121989.1-201ENST00000585888 746 ntTSL 3 BASIC6.4□□□□□ -1.38
CCDC39Q9UFE4 AC002398.1-201ENST00000589397 427 ntTSL 5 BASIC6.4□□□□□ -1.38
CCDC39Q9UFE4 AC011477.2-201ENST00000590697 921 ntTSL 2 BASIC6.4□□□□□ -1.38
CCDC39Q9UFE4 VN1R79P-201ENST00000593540 513 ntBASIC6.4□□□□□ -1.38
CCDC39Q9UFE4 UBA52-209ENST00000597451 514 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.38
CCDC39Q9UFE4 AC012065.4-201ENST00000602445 679 ntBASIC6.4□□□□□ -1.38
CCDC39Q9UFE4 SEPT7P9-203ENST00000604116 343 ntBASIC6.4□□□□□ -1.38
CCDC39Q9UFE4 LINC00343-210ENST00000608220 806 ntTSL 5 BASIC6.4□□□□□ -1.38
CCDC39Q9UFE4 AL020991.1-201ENST00000612314 373 ntBASIC6.4□□□□□ -1.38
CCDC39Q9UFE4 MIR6071-201ENST00000616741 78 ntBASIC6.4□□□□□ -1.38
CCDC39Q9UFE4 AC008121.3-201ENST00000618726 433 ntBASIC6.4□□□□□ -1.38
CCDC39Q9UFE4 AC007389.5-201ENST00000629214 744 ntTSL 5 BASIC6.4□□□□□ -1.38
CCDC39Q9UFE4 AL360270.2-201ENST00000562952 5985 ntBASIC6.4□□□□□ -1.38
CCDC39Q9UFE4 ATF2-202ENST00000345739 4079 ntTSL 1 (best) BASIC6.4□□□□□ -1.39
CCDC39Q9UFE4 NEPNP-201ENST00000404786 1371 ntBASIC6.4□□□□□ -1.39
CCDC39Q9UFE4 AC079097.1-201ENST00000512187 1399 ntBASIC6.4□□□□□ -1.39
CCDC39Q9UFE4 PEAK1-201ENST00000312493 11512 ntAPPRIS P1 TSL 5 BASIC6.39□□□□□ -1.39
CCDC39Q9UFE4 PNLIPRP3-201ENST00000369230 2354 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
CCDC39Q9UFE4 ASXL3-201ENST00000269197 11399 ntAPPRIS P2 TSL 5 BASIC6.39□□□□□ -1.39
CCDC39Q9UFE4 ZNF415-203ENST00000500065 2496 ntAPPRIS ALT2 TSL 4 BASIC6.39□□□□□ -1.39
CCDC39Q9UFE4 ADGB-205ENST00000397944 5325 ntAPPRIS P5 TSL 5 BASIC6.39□□□□□ -1.39
CCDC39Q9UFE4 CYLC2-204ENST00000612124 1817 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
CCDC39Q9UFE4 DDX58-201ENST00000379868 4089 ntTSL 5 BASIC6.39□□□□□ -1.39
CCDC39Q9UFE4 ZNF701-202ENST00000391785 2634 ntAPPRIS P3 TSL 1 (best) BASIC6.39□□□□□ -1.39
CCDC39Q9UFE4 MMRN1-202ENST00000394980 5217 ntAPPRIS P1 TSL 5 BASIC6.39□□□□□ -1.39
CCDC39Q9UFE4 PLEKHS1-204ENST00000369310 2046 ntAPPRIS ALT2 TSL 1 (best) BASIC6.39□□□□□ -1.39
CCDC39Q9UFE4 TRPC4-203ENST00000358477 2955 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
CCDC39Q9UFE4 MT-ND4L-201ENST00000361335 297 ntAPPRIS P1 BASIC6.39□□□□□ -1.39
CCDC39Q9UFE4 RNU6-353P-201ENST00000364266 108 ntBASIC6.39□□□□□ -1.39
CCDC39Q9UFE4 APOA2-201ENST00000367990 474 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
CCDC39Q9UFE4 TRAV40-201ENST00000390467 317 ntAPPRIS P1 BASIC6.39□□□□□ -1.39
CCDC39Q9UFE4 AC211486.3-201ENST00000412694 621 ntBASIC6.39□□□□□ -1.39
CCDC39Q9UFE4 AC079760.2-203ENST00000418395 489 ntTSL 3 BASIC6.39□□□□□ -1.39
CCDC39Q9UFE4 AC004882.2-201ENST00000420180 244 ntTSL 5 BASIC6.39□□□□□ -1.39
CCDC39Q9UFE4 PTP4A1P1-201ENST00000420539 515 ntBASIC6.39□□□□□ -1.39
CCDC39Q9UFE4 AL445123.1-201ENST00000422023 446 ntTSL 2 BASIC6.39□□□□□ -1.39
CCDC39Q9UFE4 AC115283.1-201ENST00000427353 400 ntBASIC6.39□□□□□ -1.39
CCDC39Q9UFE4 ELOCP14-201ENST00000428070 331 ntBASIC6.39□□□□□ -1.39
CCDC39Q9UFE4 LINC00392-201ENST00000430033 557 ntTSL 3 BASIC6.39□□□□□ -1.39
CCDC39Q9UFE4 ELOCP7-201ENST00000439968 331 ntBASIC6.39□□□□□ -1.39
CCDC39Q9UFE4 OR7E125P-201ENST00000443450 846 ntBASIC6.39□□□□□ -1.39
CCDC39Q9UFE4 LINC01359-203ENST00000444349 381 ntTSL 5 BASIC6.39□□□□□ -1.39
CCDC39Q9UFE4 SDCBP-205ENST00000447267 772 ntTSL 3 BASIC6.39□□□□□ -1.39
CCDC39Q9UFE4 FGF14-AS1-202ENST00000451630 321 ntTSL 2 BASIC6.39□□□□□ -1.39
CCDC39Q9UFE4 RNU7-140P-201ENST00000459546 60 ntBASIC6.39□□□□□ -1.39
CCDC39Q9UFE4 RPS27L-205ENST00000462430 681 ntTSL 2 BASIC6.39□□□□□ -1.39
CCDC39Q9UFE4 PSAT1P4-201ENST00000466500 526 ntBASIC6.39□□□□□ -1.39
CCDC39Q9UFE4 AC008592.4-201ENST00000509999 450 ntTSL 3 BASIC6.39□□□□□ -1.39
CCDC39Q9UFE4 AC091133.4-201ENST00000511142 308 ntBASIC6.39□□□□□ -1.39
CCDC39Q9UFE4 LINC02315-201ENST00000515218 696 ntTSL 5 BASIC6.39□□□□□ -1.39
CCDC39Q9UFE4 SNORA70.20-201ENST00000516848 126 ntBASIC6.39□□□□□ -1.39
CCDC39Q9UFE4 AC110288.1-201ENST00000517950 446 ntTSL 3 BASIC6.39□□□□□ -1.39
CCDC39Q9UFE4 AP001574.1-201ENST00000519566 546 ntTSL 4 BASIC6.39□□□□□ -1.39
CCDC39Q9UFE4 AC124067.3-201ENST00000522643 847 ntTSL 3 BASIC6.39□□□□□ -1.39
CCDC39Q9UFE4 AC093012.1-202ENST00000549403 582 ntBASIC6.39□□□□□ -1.39
CCDC39Q9UFE4 AC090515.3-201ENST00000560431 315 ntBASIC6.39□□□□□ -1.39
CCDC39Q9UFE4 SSX4B-201ENST00000595235 1221 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
CCDC39Q9UFE4 SSX4-201ENST00000595689 1221 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
CCDC39Q9UFE4 CT45A2-201ENST00000605791 1076 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
CCDC39Q9UFE4 PACRG-210ENST00000611387 279 ntTSL 5 BASIC6.39□□□□□ -1.39
CCDC39Q9UFE4 Metazoa_SRP.43-201ENST00000616394 271 ntBASIC6.39□□□□□ -1.39
CCDC39Q9UFE4 AC012409.2-201ENST00000619812 751 ntTSL 5 BASIC6.39□□□□□ -1.39
CCDC39Q9UFE4 SEPT14P19-202ENST00000632397 370 ntTSL 3 BASIC6.39□□□□□ -1.39
CCDC39Q9UFE4 AF001550.2-201ENST00000636643 217 ntBASIC6.39□□□□□ -1.39
CCDC39Q9UFE4 5S_rRNA.28-201ENST00000638107 119 ntBASIC6.39□□□□□ -1.39
CCDC39Q9UFE4 PIGX-210ENST00000639143 831 ntAPPRIS ALT2 TSL 2 BASIC6.39□□□□□ -1.39
CCDC39Q9UFE4 LARS-201ENST00000274562 2213 ntTSL 2 BASIC6.39□□□□□ -1.39
CCDC39Q9UFE4 AC139769.2-201ENST00000599944 2291 ntTSL 2 BASIC6.39□□□□□ -1.39
CCDC39Q9UFE4 Z94721.2-201ENST00000609590 5310 ntTSL 2 BASIC6.39□□□□□ -1.39
CCDC39Q9UFE4 GPALPP1-201ENST00000357537 5368 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
CCDC39Q9UFE4 UGT2A2-201ENST00000604021 1544 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
CCDC39Q9UFE4 ZNF682-207ENST00000595736 1710 ntTSL 2 BASIC6.39□□□□□ -1.39
CCDC39Q9UFE4 AC104623.2-202ENST00000623477 4002 ntBASIC6.39□□□□□ -1.39
CCDC39Q9UFE4 ZNF440-201ENST00000304060 4189 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
CCDC39Q9UFE4 OR4F13P-202ENST00000560066 2054 ntBASIC6.38□□□□□ -1.39
CCDC39Q9UFE4 BICRAL-201ENST00000314073 6530 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
CCDC39Q9UFE4 KCNJ1-204ENST00000392665 4074 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
CCDC39Q9UFE4 RAP1GDS1-206ENST00000453712 2470 ntAPPRIS ALT1 TSL 1 (best) BASIC6.38□□□□□ -1.39
CCDC39Q9UFE4 IKZF2-201ENST00000342002 3747 ntAPPRIS ALT2 TSL 1 (best) BASIC6.38□□□□□ -1.39
CCDC39Q9UFE4 FRG1BP-201ENST00000278882 761 ntBASIC6.38□□□□□ -1.39
CCDC39Q9UFE4 OR5I1-201ENST00000301532 945 ntAPPRIS P1 BASIC6.38□□□□□ -1.39
CCDC39Q9UFE4 OR5T2-201ENST00000313264 1248 ntAPPRIS P2 BASIC6.38□□□□□ -1.39
CCDC39Q9UFE4 FRG1CP-201ENST00000358464 769 ntBASIC6.38□□□□□ -1.39
CCDC39Q9UFE4 AL121886.1-201ENST00000358609 435 ntBASIC6.38□□□□□ -1.39
CCDC39Q9UFE4 Y_RNA.402-201ENST00000383972 102 ntBASIC6.38□□□□□ -1.39
CCDC39Q9UFE4 RNU6-907P-201ENST00000390924 102 ntBASIC6.38□□□□□ -1.39
Retrieved 100 of 98,524 protein–RNA pairs in 102 ms