Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 AC136489.1-201ENST00000438181 717 ntTSL 3 BASIC4.34□□□□□ -1.71
CCDC3Q9BQI4 TDGF1P1-201ENST00000445734 527 ntBASIC4.34□□□□□ -1.71
CCDC3Q9BQI4 RPL23AP43-201ENST00000446445 471 ntBASIC4.34□□□□□ -1.71
CCDC3Q9BQI4 AC114755.5-201ENST00000447760 831 ntBASIC4.34□□□□□ -1.71
CCDC3Q9BQI4 AL096803.2-201ENST00000450032 677 ntBASIC4.34□□□□□ -1.71
CCDC3Q9BQI4 AL035407.2-201ENST00000454090 378 ntBASIC4.34□□□□□ -1.71
CCDC3Q9BQI4 RNU6-1218P-201ENST00000458990 108 ntBASIC4.34□□□□□ -1.71
CCDC3Q9BQI4 AC053481.1-201ENST00000467217 306 ntBASIC4.34□□□□□ -1.71
CCDC3Q9BQI4 RPL7P19-201ENST00000469948 618 ntBASIC4.34□□□□□ -1.71
CCDC3Q9BQI4 ATP5J2-209ENST00000488775 306 ntTSL 2 BASIC4.34□□□□□ -1.71
CCDC3Q9BQI4 AC091167.1-201ENST00000492017 396 ntBASIC4.34□□□□□ -1.71
CCDC3Q9BQI4 PARP4P3-201ENST00000510265 317 ntBASIC4.34□□□□□ -1.71
CCDC3Q9BQI4 AC008728.1-201ENST00000512730 691 ntTSL 2 BASIC4.34□□□□□ -1.71
CCDC3Q9BQI4 SLIT2-IT1-201ENST00000515882 601 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
CCDC3Q9BQI4 MIR2116-201ENST00000517221 80 ntBASIC4.34□□□□□ -1.71
CCDC3Q9BQI4 AC117505.1-202ENST00000547027 566 ntTSL 3 BASIC4.34□□□□□ -1.71
CCDC3Q9BQI4 G2E3-AS1-201ENST00000548631 579 ntTSL 3 BASIC4.34□□□□□ -1.71
CCDC3Q9BQI4 AC025917.1-201ENST00000562062 612 ntTSL 3 BASIC4.34□□□□□ -1.71
CCDC3Q9BQI4 AC074050.1-201ENST00000563247 211 ntBASIC4.34□□□□□ -1.71
CCDC3Q9BQI4 AC015912.2-201ENST00000571053 181 ntBASIC4.34□□□□□ -1.71
CCDC3Q9BQI4 MIR1254-2-201ENST00000579553 63 ntBASIC4.34□□□□□ -1.71
CCDC3Q9BQI4 AC067968.2-201ENST00000592583 566 ntTSL 4 BASIC4.34□□□□□ -1.71
CCDC3Q9BQI4 VN1R85P-201ENST00000601587 426 ntBASIC4.34□□□□□ -1.71
CCDC3Q9BQI4 AL391001.1-201ENST00000602747 715 ntBASIC4.34□□□□□ -1.71
CCDC3Q9BQI4 AC125494.3-201ENST00000602759 455 ntBASIC4.34□□□□□ -1.71
CCDC3Q9BQI4 AC024941.1-201ENST00000612250 334 ntBASIC4.34□□□□□ -1.71
CCDC3Q9BQI4 AC139769.3-201ENST00000618383 175 ntBASIC4.34□□□□□ -1.71
CCDC3Q9BQI4 AC073569.3-201ENST00000619055 682 ntBASIC4.34□□□□□ -1.71
CCDC3Q9BQI4 AC004808.1-201ENST00000627671 721 ntBASIC4.34□□□□□ -1.71
CCDC3Q9BQI4 OR2L1P-202ENST00000641567 1023 ntBASIC4.34□□□□□ -1.71
CCDC3Q9BQI4 USP50-205ENST00000616326 1419 ntAPPRIS ALT2 TSL 5 BASIC4.34□□□□□ -1.71
CCDC3Q9BQI4 C8orf22-201ENST00000303202 1499 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
CCDC3Q9BQI4 ZNF12-203ENST00000404360 4474 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
CCDC3Q9BQI4 OR9H1P-201ENST00000446393 4888 ntAPPRIS P1 BASIC4.34□□□□□ -1.71
CCDC3Q9BQI4 ALS2CR12-201ENST00000286190 1769 ntAPPRIS P3 TSL 1 (best) BASIC4.34□□□□□ -1.71
CCDC3Q9BQI4 IFI16-203ENST00000359709 2609 ntAPPRIS ALT2 TSL 2 BASIC4.34□□□□□ -1.72
CCDC3Q9BQI4 PIK3CB-214ENST00000544716 3181 ntTSL 1 (best) BASIC4.34□□□□□ -1.72
CCDC3Q9BQI4 PTPN13-201ENST00000316707 7546 ntAPPRIS ALT2 TSL 1 (best) BASIC4.34□□□□□ -1.72
CCDC3Q9BQI4 LCOR-204ENST00000371103 10342 ntAPPRIS P3 TSL 1 (best) BASIC4.33□□□□□ -1.72
CCDC3Q9BQI4 CPHL1P-201ENST00000461341 3407 ntBASIC4.33□□□□□ -1.72
CCDC3Q9BQI4 MYCT1-201ENST00000367245 3030 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
CCDC3Q9BQI4 PCDH15-234ENST00000622048 6820 ntTSL 5 BASIC4.33□□□□□ -1.72
CCDC3Q9BQI4 ANXA1-202ENST00000376911 2209 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
CCDC3Q9BQI4 SPOCK3-225ENST00000535728 2007 ntAPPRIS ALT2 TSL 5 BASIC4.33□□□□□ -1.72
CCDC3Q9BQI4 AC009313.2-201ENST00000417893 1941 ntBASIC4.33□□□□□ -1.72
CCDC3Q9BQI4 RNF38-201ENST00000259605 5012 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
CCDC3Q9BQI4 HSPD1P14-201ENST00000432666 1618 ntBASIC4.33□□□□□ -1.72
CCDC3Q9BQI4 NFIB-210ENST00000543693 7622 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
CCDC3Q9BQI4 AC092435.4-201ENST00000623012 4159 ntBASIC4.33□□□□□ -1.72
CCDC3Q9BQI4 IRAK1BP1-204ENST00000607739 1387 ntTSL 2 BASIC4.33□□□□□ -1.72
CCDC3Q9BQI4 MTND4P31-201ENST00000425607 1343 ntBASIC4.33□□□□□ -1.72
CCDC3Q9BQI4 ATXN3-207ENST00000503767 1315 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
CCDC3Q9BQI4 ZNF679-201ENST00000255746 1297 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
CCDC3Q9BQI4 PPBP-201ENST00000296028 715 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
CCDC3Q9BQI4 TFPI-202ENST00000339091 1088 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
CCDC3Q9BQI4 RNA5SP388-201ENST00000362584 119 ntBASIC4.33□□□□□ -1.72
CCDC3Q9BQI4 RNA5SP366-201ENST00000365454 123 ntBASIC4.33□□□□□ -1.72
CCDC3Q9BQI4 RNU6-98P-201ENST00000384173 107 ntBASIC4.33□□□□□ -1.72
CCDC3Q9BQI4 AL590290.1-201ENST00000405336 380 ntBASIC4.33□□□□□ -1.72
CCDC3Q9BQI4 MIR1271-201ENST00000408537 86 ntBASIC4.33□□□□□ -1.72
CCDC3Q9BQI4 AL031674.1-202ENST00000413070 465 ntTSL 3 BASIC4.33□□□□□ -1.72
CCDC3Q9BQI4 ARPP21-AS1-201ENST00000415706 542 ntTSL 4 BASIC4.33□□□□□ -1.72
CCDC3Q9BQI4 ITCH-IT1-201ENST00000418598 208 ntTSL 3 BASIC4.33□□□□□ -1.72
CCDC3Q9BQI4 DYDC1-203ENST00000421924 708 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
CCDC3Q9BQI4 AL590867.3-201ENST00000436953 438 ntTSL 3 BASIC4.33□□□□□ -1.72
CCDC3Q9BQI4 BMS1P22-202ENST00000440946 1160 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
CCDC3Q9BQI4 ARL5AP2-201ENST00000444698 533 ntBASIC4.33□□□□□ -1.72
CCDC3Q9BQI4 CCNB1IP1P3-201ENST00000454702 829 ntBASIC4.33□□□□□ -1.72
CCDC3Q9BQI4 DHFRP3-201ENST00000455595 559 ntBASIC4.33□□□□□ -1.72
CCDC3Q9BQI4 AC005229.2-201ENST00000456995 399 ntBASIC4.33□□□□□ -1.72
CCDC3Q9BQI4 TPT1P1-201ENST00000458495 518 ntBASIC4.33□□□□□ -1.72
CCDC3Q9BQI4 AC007537.2-201ENST00000472093 511 ntBASIC4.33□□□□□ -1.72
CCDC3Q9BQI4 AC079910.1-201ENST00000477099 749 ntTSL 3 BASIC4.33□□□□□ -1.72
CCDC3Q9BQI4 AC008427.1-201ENST00000503102 655 ntBASIC4.33□□□□□ -1.72
CCDC3Q9BQI4 AC105924.1-201ENST00000504057 339 ntTSL 3 BASIC4.33□□□□□ -1.72
CCDC3Q9BQI4 AC097534.1-201ENST00000507803 521 ntTSL 4 BASIC4.33□□□□□ -1.72
CCDC3Q9BQI4 AL049544.1-201ENST00000511849 673 ntTSL 3 BASIC4.33□□□□□ -1.72
CCDC3Q9BQI4 AC010374.2-201ENST00000512933 535 ntBASIC4.33□□□□□ -1.72
CCDC3Q9BQI4 HMGB1P19-201ENST00000517578 577 ntBASIC4.33□□□□□ -1.72
CCDC3Q9BQI4 AP001636.3-202ENST00000525714 894 ntTSL 3 BASIC4.33□□□□□ -1.72
CCDC3Q9BQI4 AC095350.2-201ENST00000544034 201 ntTSL 5 BASIC4.33□□□□□ -1.72
CCDC3Q9BQI4 AC068714.1-201ENST00000559623 800 ntBASIC4.33□□□□□ -1.72
CCDC3Q9BQI4 NPM1P47-201ENST00000560843 856 ntBASIC4.33□□□□□ -1.72
CCDC3Q9BQI4 LINC02284-202ENST00000560924 566 ntTSL 4 BASIC4.33□□□□□ -1.72
CCDC3Q9BQI4 AC023394.1-201ENST00000578673 312 ntTSL 5 BASIC4.33□□□□□ -1.72
CCDC3Q9BQI4 RN7SL176P-201ENST00000580352 264 ntBASIC4.33□□□□□ -1.72
CCDC3Q9BQI4 HMGB2P1-201ENST00000591146 634 ntBASIC4.33□□□□□ -1.72
CCDC3Q9BQI4 VN1R84P-201ENST00000593697 235 ntBASIC4.33□□□□□ -1.72
CCDC3Q9BQI4 AC010200.2-201ENST00000605098 235 ntBASIC4.33□□□□□ -1.72
CCDC3Q9BQI4 AL109618.2-201ENST00000605527 211 ntBASIC4.33□□□□□ -1.72
CCDC3Q9BQI4 AC090525.3-201ENST00000605601 189 ntBASIC4.33□□□□□ -1.72
CCDC3Q9BQI4 AC055764.2-201ENST00000610089 670 ntBASIC4.33□□□□□ -1.72
CCDC3Q9BQI4 AC096586.1-201ENST00000610267 561 ntBASIC4.33□□□□□ -1.72
CCDC3Q9BQI4 RNU6-1192P-201ENST00000612197 107 ntBASIC4.33□□□□□ -1.72
CCDC3Q9BQI4 RNU6-489P-201ENST00000618289 107 ntBASIC4.33□□□□□ -1.72
CCDC3Q9BQI4 AL023881.1-201ENST00000621088 301 ntBASIC4.33□□□□□ -1.72
CCDC3Q9BQI4 AC015908.5-201ENST00000623289 343 ntBASIC4.33□□□□□ -1.72
CCDC3Q9BQI4 MIR3653-201ENST00000625572 110 ntBASIC4.33□□□□□ -1.72
CCDC3Q9BQI4 VIPR1-AS1-223ENST00000627073 451 ntTSL 5 BASIC4.33□□□□□ -1.72
CCDC3Q9BQI4 CRNDE-213ENST00000635991 546 ntTSL 5 BASIC4.33□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 137.7 ms