Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 TATDN1-202ENST00000517678 815 ntTSL 3 BASIC5.3□□□□□ -1.56
TDP1Q9NUW8 NAT2-202ENST00000520116 716 ntTSL 3 BASIC5.3□□□□□ -1.56
TDP1Q9NUW8 AC009563.1-202ENST00000523365 643 ntTSL 3 BASIC5.3□□□□□ -1.56
TDP1Q9NUW8 AL356215.1-201ENST00000528366 1102 ntTSL 2 BASIC5.3□□□□□ -1.56
TDP1Q9NUW8 AP002765.2-201ENST00000532961 666 ntTSL 3 BASIC5.3□□□□□ -1.56
TDP1Q9NUW8 AP002518.1-201ENST00000534904 3837 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
TDP1Q9NUW8 AC138360.1-201ENST00000552332 386 ntTSL 3 BASIC5.3□□□□□ -1.56
TDP1Q9NUW8 AC007954.1-201ENST00000554198 494 ntBASIC5.3□□□□□ -1.56
TDP1Q9NUW8 LINC02131-201ENST00000563289 419 ntTSL 2 BASIC5.3□□□□□ -1.56
TDP1Q9NUW8 AC009117.1-201ENST00000563948 554 ntBASIC5.3□□□□□ -1.56
TDP1Q9NUW8 AC024563.1-202ENST00000597533 419 ntTSL 3 BASIC5.3□□□□□ -1.56
TDP1Q9NUW8 WISP1-OT1-201ENST00000602893 642 ntBASIC5.3□□□□□ -1.56
TDP1Q9NUW8 MEMO1P5-201ENST00000604810 406 ntBASIC5.3□□□□□ -1.56
TDP1Q9NUW8 AC112220.3-201ENST00000605502 502 ntBASIC5.3□□□□□ -1.56
TDP1Q9NUW8 AC099566.1-205ENST00000609411 657 ntTSL 5 BASIC5.3□□□□□ -1.56
TDP1Q9NUW8 AC013562.2-201ENST00000611632 603 ntBASIC5.3□□□□□ -1.56
TDP1Q9NUW8 AC005332.6-201ENST00000613178 446 ntBASIC5.3□□□□□ -1.56
TDP1Q9NUW8 AC243654.3-201ENST00000617427 735 ntTSL 5 BASIC5.3□□□□□ -1.56
TDP1Q9NUW8 AC074140.1-201ENST00000621617 208 ntBASIC5.3□□□□□ -1.56
TDP1Q9NUW8 LINC01709-202ENST00000635702 1204 ntTSL 5 BASIC5.3□□□□□ -1.56
TDP1Q9NUW8 MKKS-204ENST00000639674 192 ntBASIC5.3□□□□□ -1.56
TDP1Q9NUW8 AC012618.3-205ENST00000637896 1496 ntBASIC5.3□□□□□ -1.56
TDP1Q9NUW8 LINC00507-201ENST00000540882 1935 ntTSL 5 BASIC5.3□□□□□ -1.56
TDP1Q9NUW8 AC022031.1-201ENST00000585985 2593 ntBASIC5.3□□□□□ -1.56
TDP1Q9NUW8 KMT5B-215ENST00000615954 4306 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
TDP1Q9NUW8 DBF4P1-201ENST00000412976 1892 ntBASIC5.3□□□□□ -1.56
TDP1Q9NUW8 TLR6-205ENST00000610323 1443 ntTSL 5 BASIC5.3□□□□□ -1.56
TDP1Q9NUW8 ZNF492-201ENST00000456783 4245 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
TDP1Q9NUW8 AC093671.1-201ENST00000624981 2929 ntBASIC5.3□□□□□ -1.56
TDP1Q9NUW8 DYNC1I2-225ENST00000508530 2494 ntAPPRIS ALT1 TSL 1 (best) BASIC5.3□□□□□ -1.56
TDP1Q9NUW8 MKKS-202ENST00000399054 2663 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
TDP1Q9NUW8 ADGRL2-206ENST00000370721 5023 ntTSL 5 BASIC5.3□□□□□ -1.56
TDP1Q9NUW8 OR5A2-203ENST00000641673 9444 ntAPPRIS P1 BASIC5.29□□□□□ -1.56
TDP1Q9NUW8 IRAK4-203ENST00000448290 1381 ntTSL 5 BASIC5.29□□□□□ -1.56
TDP1Q9NUW8 DDHD2-202ENST00000517385 4113 ntTSL 2 BASIC5.29□□□□□ -1.56
TDP1Q9NUW8 FAM114A2-210ENST00000520313 1394 ntTSL 2 BASIC5.29□□□□□ -1.56
TDP1Q9NUW8 TRAT1-202ENST00000426646 1596 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
TDP1Q9NUW8 MFSD4BP1-201ENST00000513330 1552 ntBASIC5.29□□□□□ -1.56
TDP1Q9NUW8 COPB2-205ENST00000507777 3034 ntTSL 2 BASIC5.29□□□□□ -1.56
TDP1Q9NUW8 OR56A4-204ENST00000641835 3613 ntAPPRIS P1 BASIC5.29□□□□□ -1.56
TDP1Q9NUW8 CACNB4-243ENST00000637217 8188 ntTSL 5 BASIC5.29□□□□□ -1.56
TDP1Q9NUW8 CPSF2-201ENST00000298875 13035 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
TDP1Q9NUW8 AC006210.2-201ENST00000367074 1545 ntBASIC5.29□□□□□ -1.56
TDP1Q9NUW8 NCLP2-201ENST00000416078 1462 ntBASIC5.29□□□□□ -1.56
TDP1Q9NUW8 EBF1-211ENST00000622875 4430 ntTSL 5 BASIC5.29□□□□□ -1.56
TDP1Q9NUW8 C1orf54-202ENST00000369099 600 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
TDP1Q9NUW8 SUGT1P1-201ENST00000379514 476 ntBASIC5.29□□□□□ -1.56
TDP1Q9NUW8 SNX10-204ENST00000409838 944 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
TDP1Q9NUW8 AC068533.2-201ENST00000411872 306 ntBASIC5.29□□□□□ -1.56
TDP1Q9NUW8 CEACAMP8-201ENST00000413902 580 ntBASIC5.29□□□□□ -1.56
TDP1Q9NUW8 BOLA3P4-201ENST00000418151 400 ntBASIC5.29□□□□□ -1.56
TDP1Q9NUW8 RPL31P54-201ENST00000429803 370 ntBASIC5.29□□□□□ -1.56
TDP1Q9NUW8 RPL39L-202ENST00000433055 749 ntAPPRIS P1 TSL 2 BASIC5.29□□□□□ -1.56
TDP1Q9NUW8 SPINK8-201ENST00000434006 444 ntAPPRIS P1 TSL 3 BASIC5.29□□□□□ -1.56
TDP1Q9NUW8 AC099670.2-201ENST00000435130 321 ntBASIC5.29□□□□□ -1.56
TDP1Q9NUW8 MTND2P40-201ENST00000436718 841 ntBASIC5.29□□□□□ -1.56
TDP1Q9NUW8 AC004865.1-201ENST00000442276 1003 ntBASIC5.29□□□□□ -1.56
TDP1Q9NUW8 RAB11AP1-201ENST00000442978 646 ntBASIC5.29□□□□□ -1.56
TDP1Q9NUW8 AL137845.2-201ENST00000444292 988 ntBASIC5.29□□□□□ -1.56
TDP1Q9NUW8 AC112498.1-201ENST00000444401 332 ntBASIC5.29□□□□□ -1.56
TDP1Q9NUW8 TMEM246-AS1-204ENST00000450109 538 ntTSL 3 BASIC5.29□□□□□ -1.56
TDP1Q9NUW8 CSN1S2AP-201ENST00000451783 779 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
TDP1Q9NUW8 DDX39BP2-208ENST00000453923 258 ntBASIC5.29□□□□□ -1.56
TDP1Q9NUW8 Z98749.1-201ENST00000454123 541 ntTSL 5 BASIC5.29□□□□□ -1.56
TDP1Q9NUW8 MTCO3P16-201ENST00000454456 754 ntBASIC5.29□□□□□ -1.56
TDP1Q9NUW8 RPS4XP12-201ENST00000461747 709 ntBASIC5.29□□□□□ -1.56
TDP1Q9NUW8 RN7SL443P-201ENST00000464331 290 ntBASIC5.29□□□□□ -1.56
TDP1Q9NUW8 SETP11-201ENST00000473027 690 ntBASIC5.29□□□□□ -1.56
TDP1Q9NUW8 TFEC-208ENST00000484212 1245 ntTSL 2 BASIC5.29□□□□□ -1.56
TDP1Q9NUW8 LINC02200-202ENST00000508879 615 ntTSL 3 BASIC5.29□□□□□ -1.56
TDP1Q9NUW8 RNA5SP43-201ENST00000516559 110 ntBASIC5.29□□□□□ -1.56
TDP1Q9NUW8 RNU6-347P-201ENST00000516658 105 ntBASIC5.29□□□□□ -1.56
TDP1Q9NUW8 AC103957.1-202ENST00000519814 735 ntTSL 3 BASIC5.29□□□□□ -1.56
TDP1Q9NUW8 AC124067.3-201ENST00000522643 847 ntTSL 3 BASIC5.29□□□□□ -1.56
TDP1Q9NUW8 AP001207.1-201ENST00000524051 481 ntBASIC5.29□□□□□ -1.56
TDP1Q9NUW8 AP000859.1-201ENST00000525536 307 ntBASIC5.29□□□□□ -1.56
TDP1Q9NUW8 RGS5-219ENST00000528019 512 ntTSL 4 BASIC5.29□□□□□ -1.56
TDP1Q9NUW8 SDHAF2-208ENST00000543265 438 ntTSL 5 BASIC5.29□□□□□ -1.56
TDP1Q9NUW8 LINC02468-201ENST00000543778 633 ntTSL 5 BASIC5.29□□□□□ -1.56
TDP1Q9NUW8 AC007406.1-201ENST00000544067 315 ntTSL 3 BASIC5.29□□□□□ -1.56
TDP1Q9NUW8 AC090049.1-201ENST00000551075 1011 ntTSL 3 BASIC5.29□□□□□ -1.56
TDP1Q9NUW8 AC068714.1-201ENST00000559623 800 ntBASIC5.29□□□□□ -1.56
TDP1Q9NUW8 AC009117.3-202ENST00000563825 557 ntTSL 4 BASIC5.29□□□□□ -1.56
TDP1Q9NUW8 AC138625.1-201ENST00000567556 483 ntTSL 3 BASIC5.29□□□□□ -1.56
TDP1Q9NUW8 AC012435.1-202ENST00000568772 240 ntBASIC5.29□□□□□ -1.56
TDP1Q9NUW8 LINC01893-201ENST00000581750 479 ntTSL 3 BASIC5.29□□□□□ -1.56
TDP1Q9NUW8 MIR4527HG-203ENST00000600127 704 ntTSL 5 BASIC5.29□□□□□ -1.56
TDP1Q9NUW8 AC005962.2-201ENST00000611427 652 ntBASIC5.29□□□□□ -1.56
TDP1Q9NUW8 AC243654.2-201ENST00000612843 443 ntBASIC5.29□□□□□ -1.56
TDP1Q9NUW8 AC008121.2-201ENST00000614647 523 ntBASIC5.29□□□□□ -1.56
TDP1Q9NUW8 AL158063.1-201ENST00000615349 536 ntBASIC5.29□□□□□ -1.56
TDP1Q9NUW8 MIR6133-201ENST00000617057 108 ntBASIC5.29□□□□□ -1.56
TDP1Q9NUW8 LINC01232-203ENST00000625369 576 ntTSL 4 BASIC5.29□□□□□ -1.56
TDP1Q9NUW8 C2orf83-206ENST00000642055 453 ntAPPRIS P3 BASIC5.29□□□□□ -1.56
TDP1Q9NUW8 AC087257.1-201ENST00000506925 2639 ntTSL 4 BASIC5.29□□□□□ -1.56
TDP1Q9NUW8 MYO5A-201ENST00000356338 11971 ntAPPRIS ALT1 TSL 1 (best) BASIC5.29□□□□□ -1.56
TDP1Q9NUW8 IL31RA-204ENST00000396834 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC5.29□□□□□ -1.56
TDP1Q9NUW8 GJA9-201ENST00000357771 1799 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
TDP1Q9NUW8 AL353784.1-201ENST00000422842 2300 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
TDP1Q9NUW8 PHLDB2-214ENST00000495180 4159 ntTSL 2 BASIC5.29□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 94.6 ms