Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 LINC02384-206ENST00000541707 904 ntTSL 3 BASIC1.2□□□□□ -2.22
SYNE1Q8NF91 AC073655.2-202ENST00000547927 401 ntTSL 3 BASIC1.2□□□□□ -2.22
SYNE1Q8NF91 AC087311.2-201ENST00000549660 320 ntTSL 4 BASIC1.2□□□□□ -2.22
SYNE1Q8NF91 AC084757.2-201ENST00000559165 540 ntTSL 2 BASIC1.2□□□□□ -2.22
SYNE1Q8NF91 AC110743.1-201ENST00000584870 478 ntBASIC1.2□□□□□ -2.22
SYNE1Q8NF91 AL022097.1-201ENST00000602500 806 ntTSL 1 (best) BASIC1.2□□□□□ -2.22
SYNE1Q8NF91 AC241377.1-201ENST00000619797 406 ntBASIC1.2□□□□□ -2.22
SYNE1Q8NF91 SGO1-AS1-203ENST00000455626 2041 ntTSL 1 (best) BASIC1.2□□□□□ -2.22
SYNE1Q8NF91 SLC44A5-201ENST00000370855 4406 ntAPPRIS P3 TSL 1 (best) BASIC1.2□□□□□ -2.22
SYNE1Q8NF91 EED-206ENST00000527888 1422 ntTSL 2 BASIC1.2□□□□□ -2.22
SYNE1Q8NF91 ADGRG4-201ENST00000370652 9820 ntAPPRIS P2 TSL 5 BASIC1.2□□□□□ -2.22
SYNE1Q8NF91 PRRG1-202ENST00000449135 4481 ntAPPRIS P1 TSL 1 (best) BASIC1.2□□□□□ -2.22
SYNE1Q8NF91 DNAJA1P1-201ENST00000425106 1187 ntBASIC1.2□□□□□ -2.22
SYNE1Q8NF91 AP000477.1-202ENST00000434859 847 ntTSL 3 BASIC1.2□□□□□ -2.22
SYNE1Q8NF91 LINC00972-202ENST00000438065 788 ntTSL 3 BASIC1.2□□□□□ -2.22
SYNE1Q8NF91 RPS27AP15-201ENST00000447672 466 ntBASIC1.2□□□□□ -2.22
SYNE1Q8NF91 LINC00377-201ENST00000456588 657 ntTSL 5 BASIC1.2□□□□□ -2.22
SYNE1Q8NF91 AL133162.1-201ENST00000463228 453 ntBASIC1.2□□□□□ -2.22
SYNE1Q8NF91 AL390334.1-201ENST00000556395 450 ntBASIC1.2□□□□□ -2.22
SYNE1Q8NF91 NPM1P47-201ENST00000560843 856 ntBASIC1.2□□□□□ -2.22
SYNE1Q8NF91 AC010998.2-201ENST00000605549 625 ntTSL 5 BASIC1.2□□□□□ -2.22
SYNE1Q8NF91 OR8H1-202ENST00000610894 927 ntAPPRIS ALT1 BASIC1.2□□□□□ -2.22
SYNE1Q8NF91 HSPD1P14-201ENST00000432666 1618 ntBASIC1.2□□□□□ -2.22
SYNE1Q8NF91 RABGAP1L-206ENST00000367688 1425 ntTSL 2 BASIC1.2□□□□□ -2.22
SYNE1Q8NF91 AKAP9-201ENST00000356239 12471 ntAPPRIS P2 TSL 1 (best) BASIC1.2□□□□□ -2.22
SYNE1Q8NF91 ANKRD30A-201ENST00000361713 4405 ntAPPRIS P2 TSL 5 BASIC1.2□□□□□ -2.22
SYNE1Q8NF91 PHTF2-208ENST00000450574 2516 ntTSL 1 (best) BASIC1.2□□□□□ -2.22
SYNE1Q8NF91 TCN1-201ENST00000257264 1582 ntAPPRIS P1 TSL 1 (best) BASIC1.2□□□□□ -2.22
SYNE1Q8NF91 LINC02426-201ENST00000550506 1372 ntTSL 1 (best) BASIC1.2□□□□□ -2.22
SYNE1Q8NF91 KLRD1-204ENST00000381908 15549 ntAPPRIS P4 TSL 1 (best) BASIC1.2□□□□□ -2.22
SYNE1Q8NF91 OR13G1-201ENST00000359688 1046 ntAPPRIS P1 BASIC1.2□□□□□ -2.22
SYNE1Q8NF91 RNA5SP52-201ENST00000362448 134 ntBASIC1.2□□□□□ -2.22
SYNE1Q8NF91 RNA5SP175-201ENST00000364275 119 ntBASIC1.2□□□□□ -2.22
SYNE1Q8NF91 AC096554.1-201ENST00000458182 529 ntTSL 5 BASIC1.2□□□□□ -2.22
SYNE1Q8NF91 AC025554.1-201ENST00000505641 188 ntBASIC1.2□□□□□ -2.22
SYNE1Q8NF91 AC005823.2-201ENST00000505978 650 ntTSL 3 BASIC1.2□□□□□ -2.22
SYNE1Q8NF91 AC069306.1-201ENST00000507006 843 ntBASIC1.2□□□□□ -2.22
SYNE1Q8NF91 PCAT1-201ENST00000519319 734 ntTSL 2 BASIC1.2□□□□□ -2.22
SYNE1Q8NF91 AL355112.1-201ENST00000550309 1236 ntTSL 1 (best) BASIC1.2□□□□□ -2.22
SYNE1Q8NF91 AC008056.1-201ENST00000553322 394 ntTSL 3 BASIC1.2□□□□□ -2.22
SYNE1Q8NF91 AC022929.1-201ENST00000560675 823 ntTSL 3 BASIC1.2□□□□□ -2.22
SYNE1Q8NF91 AC097467.3-205ENST00000597955 594 ntTSL 5 BASIC1.2□□□□□ -2.22
SYNE1Q8NF91 AC015813.4-201ENST00000610469 179 ntBASIC1.2□□□□□ -2.22
SYNE1Q8NF91 AC026368.1-201ENST00000614934 690 ntBASIC1.2□□□□□ -2.22
SYNE1Q8NF91 MIR6715A-201ENST00000615929 79 ntBASIC1.2□□□□□ -2.22
SYNE1Q8NF91 ALCAM-207ENST00000486979 1818 ntTSL 5 BASIC1.2□□□□□ -2.22
SYNE1Q8NF91 TMEM71-201ENST00000356838 1993 ntAPPRIS P3 TSL 1 (best) BASIC1.2□□□□□ -2.22
SYNE1Q8NF91 ZSCAN4-202ENST00000612521 1979 ntAPPRIS P1 TSL 5 BASIC1.2□□□□□ -2.22
SYNE1Q8NF91 LGI1-210ENST00000629035 2251 ntTSL 5 BASIC1.2□□□□□ -2.22
SYNE1Q8NF91 PPP1R9A-208ENST00000456331 10090 ntTSL 1 (best) BASIC1.2□□□□□ -2.22
SYNE1Q8NF91 C1orf100-201ENST00000308105 579 ntAPPRIS P1 TSL 2 BASIC1.2□□□□□ -2.22
SYNE1Q8NF91 AC011933.1-201ENST00000413334 321 ntBASIC1.2□□□□□ -2.22
SYNE1Q8NF91 TAF1A-AS1-202ENST00000427540 750 ntTSL 2 BASIC1.2□□□□□ -2.22
SYNE1Q8NF91 AC116533.1-201ENST00000459748 321 ntBASIC1.2□□□□□ -2.22
SYNE1Q8NF91 CXCL11-202ENST00000503860 767 ntAPPRIS P1 TSL 3 BASIC1.2□□□□□ -2.22
SYNE1Q8NF91 RNU6-352P-201ENST00000516908 107 ntBASIC1.2□□□□□ -2.22
SYNE1Q8NF91 RN7SKP289-201ENST00000517244 295 ntBASIC1.2□□□□□ -2.22
SYNE1Q8NF91 OR5B10P-201ENST00000532869 642 ntBASIC1.2□□□□□ -2.22
SYNE1Q8NF91 AC013437.1-201ENST00000549878 414 ntTSL 3 BASIC1.2□□□□□ -2.22
SYNE1Q8NF91 AP005271.1-201ENST00000582470 412 ntTSL 3 BASIC1.2□□□□□ -2.22
SYNE1Q8NF91 ATP7A-202ENST00000343533 8289 ntTSL 5 BASIC1.2□□□□□ -2.22
SYNE1Q8NF91 AC074029.4-201ENST00000624796 1859 ntBASIC1.2□□□□□ -2.22
SYNE1Q8NF91 CKAP5-202ENST00000354558 6428 ntTSL 1 (best) BASIC1.2□□□□□ -2.22
SYNE1Q8NF91 PLEKHG7-203ENST00000638590 3267 ntAPPRIS P1 TSL 2 BASIC1.2□□□□□ -2.22
SYNE1Q8NF91 HSPA8P1-201ENST00000425843 1833 ntBASIC1.2□□□□□ -2.22
SYNE1Q8NF91 ANKRD20A10P-201ENST00000457591 1515 ntBASIC1.2□□□□□ -2.22
SYNE1Q8NF91 RBMS1-203ENST00000409075 1550 ntTSL 1 (best) BASIC1.2□□□□□ -2.22
SYNE1Q8NF91 CYCSP43-201ENST00000438233 310 ntBASIC1.2□□□□□ -2.22
SYNE1Q8NF91 AL359378.1-201ENST00000439891 400 ntTSL 5 BASIC1.2□□□□□ -2.22
SYNE1Q8NF91 NOTCH2P1-201ENST00000443481 624 ntBASIC1.2□□□□□ -2.22
SYNE1Q8NF91 RANP8-201ENST00000444720 713 ntBASIC1.2□□□□□ -2.22
SYNE1Q8NF91 AC073387.1-201ENST00000453261 709 ntBASIC1.2□□□□□ -2.22
SYNE1Q8NF91 PDCD10-207ENST00000471885 764 ntTSL 5 BASIC1.2□□□□□ -2.22
SYNE1Q8NF91 UBE2D3-217ENST00000504211 578 ntTSL 2 BASIC1.2□□□□□ -2.22
SYNE1Q8NF91 AC097534.1-201ENST00000507803 521 ntTSL 4 BASIC1.2□□□□□ -2.22
SYNE1Q8NF91 AC010653.1-201ENST00000571108 881 ntBASIC1.2□□□□□ -2.22
SYNE1Q8NF91 AC136601.2-201ENST00000604356 474 ntBASIC1.2□□□□□ -2.22
SYNE1Q8NF91 TEX41-265ENST00000627785 704 ntTSL 5 BASIC1.2□□□□□ -2.22
SYNE1Q8NF91 TEX41-280ENST00000629185 591 ntTSL 5 BASIC1.2□□□□□ -2.22
SYNE1Q8NF91 AC073346.2-201ENST00000624724 2058 ntBASIC1.2□□□□□ -2.22
SYNE1Q8NF91 KLHL28-202ENST00000396128 6545 ntAPPRIS P1 TSL 1 (best) BASIC1.2□□□□□ -2.22
SYNE1Q8NF91 YWHAZ-211ENST00000457309 3007 ntAPPRIS P1 TSL 2 BASIC1.2□□□□□ -2.22
SYNE1Q8NF91 DMD-230ENST00000620040 13746 ntAPPRIS ALT2 TSL 5 BASIC1.2□□□□□ -2.22
SYNE1Q8NF91 GPBP1-205ENST00000511209 2243 ntAPPRIS ALT2 TSL 2 BASIC1.2□□□□□ -2.22
SYNE1Q8NF91 ZNF705A-204ENST00000610508 3378 ntAPPRIS P1 TSL 5 BASIC1.2□□□□□ -2.22
SYNE1Q8NF91 AC092111.2-201ENST00000611627 1414 ntBASIC1.2□□□□□ -2.22
SYNE1Q8NF91 KCNE2-201ENST00000290310 1051 ntAPPRIS P1 TSL 1 (best) BASIC1.2□□□□□ -2.22
SYNE1Q8NF91 LGALS16-201ENST00000392051 624 ntAPPRIS P1 TSL 1 (best) BASIC1.2□□□□□ -2.22
SYNE1Q8NF91 MIR1289-1-201ENST00000408836 144 ntBASIC1.2□□□□□ -2.22
SYNE1Q8NF91 CLK1-203ENST00000409769 1192 ntTSL 2 BASIC1.2□□□□□ -2.22
SYNE1Q8NF91 AC062016.2-201ENST00000420950 676 ntBASIC1.2□□□□□ -2.22
SYNE1Q8NF91 NMNAT1P2-201ENST00000435192 860 ntBASIC1.2□□□□□ -2.22
SYNE1Q8NF91 DDX39BP2-208ENST00000453923 258 ntBASIC1.2□□□□□ -2.22
SYNE1Q8NF91 AL133351.1-201ENST00000456189 417 ntTSL 2 BASIC1.2□□□□□ -2.22
SYNE1Q8NF91 RPL38P1-201ENST00000460914 211 ntBASIC1.2□□□□□ -2.22
SYNE1Q8NF91 LINC01957-201ENST00000506392 751 ntTSL 1 (best) BASIC1.2□□□□□ -2.22
SYNE1Q8NF91 PLAC8-205ENST00000509973 489 ntTSL 1 (best) BASIC1.2□□□□□ -2.22
SYNE1Q8NF91 LINC02465-204ENST00000514892 481 ntTSL 2 BASIC1.2□□□□□ -2.22
SYNE1Q8NF91 AC026979.4-201ENST00000606555 645 ntBASIC1.2□□□□□ -2.22
SYNE1Q8NF91 RNU1-30P-201ENST00000606575 163 ntBASIC1.2□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 117.7 ms