Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 SUMO2P14-201ENST00000604488 293 ntBASIC3.81□□□□□ -1.8
SKA3Q8IX90 AL354984.3-201ENST00000604803 325 ntBASIC3.81□□□□□ -1.8
SKA3Q8IX90 AL356218.2-201ENST00000605264 187 ntBASIC3.81□□□□□ -1.8
SKA3Q8IX90 LINC00993-204ENST00000606476 500 ntTSL 5 BASIC3.81□□□□□ -1.8
SKA3Q8IX90 uc_338.9-201ENST00000617424 182 ntBASIC3.81□□□□□ -1.8
SKA3Q8IX90 AC245452.5-201ENST00000620649 780 ntTSL 3 BASIC3.81□□□□□ -1.8
SKA3Q8IX90 PNPT1P2-201ENST00000456768 2050 ntBASIC3.81□□□□□ -1.8
SKA3Q8IX90 DDX4-204ENST00000505374 2884 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
SKA3Q8IX90 MAP3K19-203ENST00000375845 4369 ntAPPRIS P3 TSL 1 (best) BASIC3.81□□□□□ -1.8
SKA3Q8IX90 CENPF-201ENST00000366955 10307 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
SKA3Q8IX90 AC016687.3-202ENST00000505018 2404 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
SKA3Q8IX90 OR12D1-207ENST00000514827 1712 ntAPPRIS P1 BASIC3.81□□□□□ -1.8
SKA3Q8IX90 AL133412.1-201ENST00000380194 2992 ntBASIC3.81□□□□□ -1.8
SKA3Q8IX90 KCNRG-202ENST00000360473 1623 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
SKA3Q8IX90 MTRNR2L6-201ENST00000604952 1447 ntAPPRIS P1 BASIC3.8□□□□□ -1.8
SKA3Q8IX90 CFAP44-202ENST00000393845 7069 ntAPPRIS ALT2 TSL 5 BASIC3.8□□□□□ -1.8
SKA3Q8IX90 GAB1-203ENST00000505913 2477 ntTSL 2 BASIC3.8□□□□□ -1.8
SKA3Q8IX90 SNCA-213ENST00000618500 3022 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
SKA3Q8IX90 LGI1-228ENST00000637689 1802 ntTSL 5 BASIC3.8□□□□□ -1.8
SKA3Q8IX90 PHC3-215ENST00000495893 12666 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
SKA3Q8IX90 FAM111B-202ENST00000411426 3344 ntTSL 4 BASIC3.8□□□□□ -1.8
SKA3Q8IX90 DEFB129-201ENST00000246105 698 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
SKA3Q8IX90 RNU6-452P-201ENST00000384406 107 ntBASIC3.8□□□□□ -1.8
SKA3Q8IX90 RNU6-603P-201ENST00000411403 107 ntBASIC3.8□□□□□ -1.8
SKA3Q8IX90 AL450992.3-201ENST00000413192 568 ntBASIC3.8□□□□□ -1.8
SKA3Q8IX90 AC138024.1-201ENST00000420867 699 ntTSL 3 BASIC3.8□□□□□ -1.8
SKA3Q8IX90 MTCO3P21-201ENST00000430791 643 ntBASIC3.8□□□□□ -1.8
SKA3Q8IX90 AL132765.1-201ENST00000434165 553 ntBASIC3.8□□□□□ -1.8
SKA3Q8IX90 RPL23AP52-201ENST00000439311 478 ntBASIC3.8□□□□□ -1.8
SKA3Q8IX90 TPT1P13-201ENST00000449760 499 ntBASIC3.8□□□□□ -1.8
SKA3Q8IX90 FABP3P2-201ENST00000453169 399 ntBASIC3.8□□□□□ -1.8
SKA3Q8IX90 RPL7P32-201ENST00000457119 744 ntBASIC3.8□□□□□ -1.8
SKA3Q8IX90 AC006463.2-201ENST00000473326 348 ntBASIC3.8□□□□□ -1.8
SKA3Q8IX90 CD200R1-205ENST00000490004 778 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
SKA3Q8IX90 AC109349.1-201ENST00000503299 758 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
SKA3Q8IX90 AC008591.1-201ENST00000503616 631 ntTSL 3 BASIC3.8□□□□□ -1.8
SKA3Q8IX90 AC097478.1-202ENST00000508021 567 ntTSL 4 BASIC3.8□□□□□ -1.8
SKA3Q8IX90 SNORA76.2-201ENST00000517095 137 ntBASIC3.8□□□□□ -1.8
SKA3Q8IX90 AC103853.1-201ENST00000520588 649 ntTSL 5 BASIC3.8□□□□□ -1.8
SKA3Q8IX90 AP003557.1-202ENST00000528978 562 ntTSL 4 BASIC3.8□□□□□ -1.8
SKA3Q8IX90 AC091515.1-201ENST00000548110 679 ntBASIC3.8□□□□□ -1.8
SKA3Q8IX90 AC125603.1-201ENST00000552718 366 ntTSL 3 BASIC3.8□□□□□ -1.8
SKA3Q8IX90 AC016526.2-201ENST00000554225 520 ntTSL 3 BASIC3.8□□□□□ -1.8
SKA3Q8IX90 AL355095.1-201ENST00000554451 539 ntTSL 2 BASIC3.8□□□□□ -1.8
SKA3Q8IX90 AL163932.1-201ENST00000555776 542 ntTSL 4 BASIC3.8□□□□□ -1.8
SKA3Q8IX90 AL137129.1-201ENST00000555937 720 ntTSL 4 BASIC3.8□□□□□ -1.8
SKA3Q8IX90 AC023034.1-201ENST00000558141 518 ntTSL 3 BASIC3.8□□□□□ -1.8
SKA3Q8IX90 LINC01533-202ENST00000588694 632 ntTSL 2 BASIC3.8□□□□□ -1.8
SKA3Q8IX90 ZNF92P2-201ENST00000600543 1059 ntBASIC3.8□□□□□ -1.8
SKA3Q8IX90 AC090525.3-201ENST00000605601 189 ntBASIC3.8□□□□□ -1.8
SKA3Q8IX90 AL031666.3-201ENST00000609320 1006 ntBASIC3.8□□□□□ -1.8
SKA3Q8IX90 AC116447.1-201ENST00000613153 453 ntBASIC3.8□□□□□ -1.8
SKA3Q8IX90 AL512506.1-201ENST00000613918 449 ntBASIC3.8□□□□□ -1.8
SKA3Q8IX90 AC244196.2-201ENST00000621184 411 ntAPPRIS P1 BASIC3.8□□□□□ -1.8
SKA3Q8IX90 KIAA1524-208ENST00000625495 147 ntTSL 5 BASIC3.8□□□□□ -1.8
SKA3Q8IX90 CDKL3-209ENST00000523054 1775 ntTSL 2 BASIC3.8□□□□□ -1.8
SKA3Q8IX90 SYNE2-202ENST00000344113 21777 ntAPPRIS ALT2 TSL 1 (best) BASIC3.8□□□□□ -1.8
SKA3Q8IX90 NRK-204ENST00000540278 1687 ntTSL 2 BASIC3.8□□□□□ -1.8
SKA3Q8IX90 EYA4-202ENST00000355286 4317 ntAPPRIS ALT1 TSL 1 (best) BASIC3.8□□□□□ -1.8
SKA3Q8IX90 ERBIN-214ENST00000511297 4257 ntAPPRIS ALT1 TSL 5 BASIC3.8□□□□□ -1.8
SKA3Q8IX90 AC010300.1-201ENST00000600671 5134 ntBASIC3.8□□□□□ -1.8
SKA3Q8IX90 ZNF90P1-201ENST00000480493 1951 ntBASIC3.8□□□□□ -1.8
SKA3Q8IX90 SMC6-203ENST00000402989 3729 ntAPPRIS P1 TSL 2 BASIC3.8□□□□□ -1.8
SKA3Q8IX90 AL049555.1-201ENST00000562834 1933 ntBASIC3.8□□□□□ -1.8
SKA3Q8IX90 PLCB4-206ENST00000414679 3947 ntAPPRIS ALT1 TSL 5 BASIC3.79□□□□□ -1.8
SKA3Q8IX90 EIF2AP4-201ENST00000424793 1781 ntBASIC3.79□□□□□ -1.8
SKA3Q8IX90 SEC31A-203ENST00000348405 4012 ntAPPRIS ALT2 TSL 1 (best) BASIC3.79□□□□□ -1.8
SKA3Q8IX90 LIPI-201ENST00000344577 1652 ntAPPRIS P2 TSL 1 (best) BASIC3.79□□□□□ -1.8
SKA3Q8IX90 AC067945.1-201ENST00000342609 618 ntBASIC3.79□□□□□ -1.8
SKA3Q8IX90 ARV1-202ENST00000366658 1170 ntTSL 5 BASIC3.79□□□□□ -1.8
SKA3Q8IX90 CD84-205ENST00000368051 965 ntAPPRIS ALT2 TSL 1 (best) BASIC3.79□□□□□ -1.8
SKA3Q8IX90 RNU6-185P-201ENST00000384421 107 ntBASIC3.79□□□□□ -1.8
SKA3Q8IX90 SNORD66.1-201ENST00000391230 76 ntBASIC3.79□□□□□ -1.8
SKA3Q8IX90 AL583835.1-201ENST00000399570 407 ntBASIC3.79□□□□□ -1.8
SKA3Q8IX90 RN7SKP56-201ENST00000410513 331 ntBASIC3.79□□□□□ -1.8
SKA3Q8IX90 FLJ27354-201ENST00000415584 788 ntTSL 2 BASIC3.79□□□□□ -1.8
SKA3Q8IX90 AC073335.1-201ENST00000427776 363 ntBASIC3.79□□□□□ -1.8
SKA3Q8IX90 ELOCP3-201ENST00000439303 348 ntBASIC3.79□□□□□ -1.8
SKA3Q8IX90 LARS2-AS1-201ENST00000442534 575 ntTSL 4 BASIC3.79□□□□□ -1.8
SKA3Q8IX90 AL033380.1-201ENST00000442781 421 ntTSL 2 BASIC3.79□□□□□ -1.8
SKA3Q8IX90 RPS20P4-201ENST00000461659 355 ntBASIC3.79□□□□□ -1.8
SKA3Q8IX90 AC011276.1-201ENST00000469688 323 ntBASIC3.79□□□□□ -1.8
SKA3Q8IX90 AC117430.1-201ENST00000474711 801 ntTSL 5 BASIC3.79□□□□□ -1.8
SKA3Q8IX90 AC092691.3-201ENST00000482766 510 ntTSL 3 BASIC3.79□□□□□ -1.8
SKA3Q8IX90 C1orf143-202ENST00000491260 813 ntTSL 3 BASIC3.79□□□□□ -1.8
SKA3Q8IX90 LINC02430-201ENST00000504755 476 ntTSL 3 BASIC3.79□□□□□ -1.8
SKA3Q8IX90 LINC00603-201ENST00000507027 733 ntTSL 5 BASIC3.79□□□□□ -1.8
SKA3Q8IX90 SNORA31.13-201ENST00000516624 135 ntBASIC3.79□□□□□ -1.8
SKA3Q8IX90 IGHV3-32-201ENST00000519182 355 ntBASIC3.79□□□□□ -1.8
SKA3Q8IX90 AC107373.1-201ENST00000522570 603 ntTSL 3 BASIC3.79□□□□□ -1.8
SKA3Q8IX90 AF117829.1-210ENST00000523859 696 ntTSL 3 BASIC3.79□□□□□ -1.8
SKA3Q8IX90 LONRF1-203ENST00000525024 841 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
SKA3Q8IX90 LINC02325-202ENST00000554260 567 ntTSL 4 BASIC3.79□□□□□ -1.8
SKA3Q8IX90 AC141257.3-201ENST00000572906 215 ntBASIC3.79□□□□□ -1.8
SKA3Q8IX90 MIR4277-201ENST00000578298 84 ntBASIC3.79□□□□□ -1.8
SKA3Q8IX90 AP001011.1-202ENST00000581172 667 ntTSL 3 BASIC3.79□□□□□ -1.8
SKA3Q8IX90 AC244505.7-201ENST00000599675 272 ntBASIC3.79□□□□□ -1.8
SKA3Q8IX90 AC007546.1-201ENST00000619452 559 ntBASIC3.79□□□□□ -1.8
SKA3Q8IX90 Metazoa_SRP.193-201ENST00000622007 277 ntBASIC3.79□□□□□ -1.8
SKA3Q8IX90 AC007342.8-201ENST00000623278 678 ntBASIC3.79□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 83 ms