Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 RPL37P3-201ENST00000456825 293 ntBASIC4.69□□□□□ -1.66
COL28A1Q2UY09 SNORD11.1-201ENST00000459482 85 ntBASIC4.69□□□□□ -1.66
COL28A1Q2UY09 AC073522.1-201ENST00000483312 377 ntBASIC4.69□□□□□ -1.66
COL28A1Q2UY09 ATP5J2-209ENST00000488775 306 ntTSL 2 BASIC4.69□□□□□ -1.66
COL28A1Q2UY09 AC010350.1-201ENST00000504908 231 ntBASIC4.69□□□□□ -1.66
COL28A1Q2UY09 AC118282.1-201ENST00000506408 765 ntBASIC4.69□□□□□ -1.66
COL28A1Q2UY09 LINC02428-201ENST00000508099 527 ntTSL 5 BASIC4.69□□□□□ -1.66
COL28A1Q2UY09 LINC02466-202ENST00000509105 653 ntTSL 3 BASIC4.69□□□□□ -1.66
COL28A1Q2UY09 HDAC2-AS2-207ENST00000518470 563 ntTSL 4 BASIC4.69□□□□□ -1.66
COL28A1Q2UY09 IGJP1-201ENST00000522682 475 ntBASIC4.69□□□□□ -1.66
COL28A1Q2UY09 AC090809.1-201ENST00000524132 570 ntTSL 4 BASIC4.69□□□□□ -1.66
COL28A1Q2UY09 AC132219.1-201ENST00000524337 478 ntTSL 5 BASIC4.69□□□□□ -1.66
COL28A1Q2UY09 SDHAF2-208ENST00000543265 438 ntTSL 5 BASIC4.69□□□□□ -1.66
COL28A1Q2UY09 PRR4-212ENST00000544994 326 ntAPPRIS ALT2 TSL 1 (best) BASIC4.69□□□□□ -1.66
COL28A1Q2UY09 AL163973.2-201ENST00000548096 288 ntTSL 3 BASIC4.69□□□□□ -1.66
COL28A1Q2UY09 AC012404.2-201ENST00000558572 481 ntTSL 3 BASIC4.69□□□□□ -1.66
COL28A1Q2UY09 AC024220.1-201ENST00000603675 484 ntBASIC4.69□□□□□ -1.66
COL28A1Q2UY09 AC005191.1-201ENST00000603950 358 ntBASIC4.69□□□□□ -1.66
COL28A1Q2UY09 IGKV1OR2-9-201ENST00000603957 287 ntBASIC4.69□□□□□ -1.66
COL28A1Q2UY09 IGKV1OR2-11-201ENST00000604120 287 ntBASIC4.69□□□□□ -1.66
COL28A1Q2UY09 AC106052.1-201ENST00000608029 497 ntBASIC4.69□□□□□ -1.66
COL28A1Q2UY09 AC063944.3-201ENST00000609969 533 ntBASIC4.69□□□□□ -1.66
COL28A1Q2UY09 VN1R74P-201ENST00000613259 503 ntBASIC4.69□□□□□ -1.66
COL28A1Q2UY09 CLCA3P-201ENST00000284054 2407 ntTSL 5 BASIC4.69□□□□□ -1.66
COL28A1Q2UY09 CLEC1B-204ENST00000428126 3054 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
COL28A1Q2UY09 UBE3A-203ENST00000428984 2986 ntAPPRIS P3 TSL 5 BASIC4.69□□□□□ -1.66
COL28A1Q2UY09 OR5AU1-203ENST00000641697 7755 ntAPPRIS P1 BASIC4.69□□□□□ -1.66
COL28A1Q2UY09 TRAT1-202ENST00000426646 1596 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
COL28A1Q2UY09 MAPK10-349ENST00000641767 3661 ntBASIC4.69□□□□□ -1.66
COL28A1Q2UY09 FAM204A-203ENST00000369183 13889 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
COL28A1Q2UY09 ZBTB38-201ENST00000321464 3588 ntAPPRIS P1 BASIC4.69□□□□□ -1.66
COL28A1Q2UY09 DTNA-229ENST00000598142 2509 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
COL28A1Q2UY09 PRLR-220ENST00000620785 11063 ntTSL 5 BASIC4.69□□□□□ -1.66
COL28A1Q2UY09 CXCL11-201ENST00000306621 1606 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
COL28A1Q2UY09 AC092162.3-201ENST00000624511 1624 ntBASIC4.68□□□□□ -1.66
COL28A1Q2UY09 IREB2-201ENST00000258886 6354 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
COL28A1Q2UY09 PRG4-203ENST00000367485 4765 ntAPPRIS ALT2 TSL 5 BASIC4.68□□□□□ -1.66
COL28A1Q2UY09 ADCY10-202ENST00000367851 5051 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
COL28A1Q2UY09 ITGB1-205ENST00000423113 3729 ntAPPRIS ALT1 TSL 5 BASIC4.68□□□□□ -1.66
COL28A1Q2UY09 RGS4-202ENST00000367908 2606 ntTSL 2 BASIC4.68□□□□□ -1.66
COL28A1Q2UY09 EIF2AK3-203ENST00000419748 4222 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
COL28A1Q2UY09 DEFB119-203ENST00000376321 457 ntAPPRIS P3 TSL 1 (best) BASIC4.68□□□□□ -1.66
COL28A1Q2UY09 KRTAP22-2-201ENST00000382830 293 ntAPPRIS P1 BASIC4.68□□□□□ -1.66
COL28A1Q2UY09 SNORA51.12-201ENST00000384448 134 ntBASIC4.68□□□□□ -1.66
COL28A1Q2UY09 MIR92A2-201ENST00000385299 75 ntBASIC4.68□□□□□ -1.66
COL28A1Q2UY09 TRAV16-201ENST00000390444 329 ntAPPRIS P1 BASIC4.68□□□□□ -1.66
COL28A1Q2UY09 POLR1D-202ENST00000399696 668 ntAPPRIS ALT1 TSL 5 BASIC4.68□□□□□ -1.66
COL28A1Q2UY09 AL035079.1-201ENST00000405210 287 ntBASIC4.68□□□□□ -1.66
COL28A1Q2UY09 AL354733.1-204ENST00000412069 424 ntTSL 5 BASIC4.68□□□□□ -1.66
COL28A1Q2UY09 SLC8A1-AS1-201ENST00000413479 800 ntTSL 5 BASIC4.68□□□□□ -1.66
COL28A1Q2UY09 BTF3P8-201ENST00000414577 526 ntBASIC4.68□□□□□ -1.66
COL28A1Q2UY09 RPL6P29-201ENST00000414863 865 ntBASIC4.68□□□□□ -1.66
COL28A1Q2UY09 AL035246.1-201ENST00000433554 1255 ntBASIC4.68□□□□□ -1.66
COL28A1Q2UY09 USP9YP24-201ENST00000434374 697 ntBASIC4.68□□□□□ -1.66
COL28A1Q2UY09 AC072062.1-204ENST00000437897 1132 ntTSL 5 BASIC4.68□□□□□ -1.66
COL28A1Q2UY09 RPS26P30-201ENST00000443431 335 ntBASIC4.68□□□□□ -1.66
COL28A1Q2UY09 USP9YP17-201ENST00000444617 696 ntBASIC4.68□□□□□ -1.66
COL28A1Q2UY09 AC010733.1-201ENST00000451515 401 ntBASIC4.68□□□□□ -1.66
COL28A1Q2UY09 CYCSP34-201ENST00000458172 304 ntBASIC4.68□□□□□ -1.66
COL28A1Q2UY09 AC025674.1-201ENST00000507074 324 ntBASIC4.68□□□□□ -1.66
COL28A1Q2UY09 AC010406.1-201ENST00000507948 555 ntTSL 3 BASIC4.68□□□□□ -1.66
COL28A1Q2UY09 TMPRSS11BNL-205ENST00000514295 1262 ntBASIC4.68□□□□□ -1.66
COL28A1Q2UY09 SNORA67.7-201ENST00000516664 135 ntBASIC4.68□□□□□ -1.66
COL28A1Q2UY09 RNA5SP143-201ENST00000516936 115 ntBASIC4.68□□□□□ -1.66
COL28A1Q2UY09 TBCA-203ENST00000517679 545 ntTSL 3 BASIC4.68□□□□□ -1.66
COL28A1Q2UY09 AC023632.4-201ENST00000517783 191 ntBASIC4.68□□□□□ -1.66
COL28A1Q2UY09 LINC02553-201ENST00000529088 734 ntTSL 5 BASIC4.68□□□□□ -1.66
COL28A1Q2UY09 ZNF84-212ENST00000542874 540 ntTSL 5 BASIC4.68□□□□□ -1.66
COL28A1Q2UY09 AC008147.1-201ENST00000551284 325 ntTSL 3 BASIC4.68□□□□□ -1.66
COL28A1Q2UY09 AL031600.2-201ENST00000563223 307 ntTSL 5 BASIC4.68□□□□□ -1.66
COL28A1Q2UY09 AP005119.2-201ENST00000579735 1105 ntBASIC4.68□□□□□ -1.66
COL28A1Q2UY09 DYNAP-202ENST00000585973 1102 ntAPPRIS ALT2 TSL 3 BASIC4.68□□□□□ -1.66
COL28A1Q2UY09 AC015914.2-201ENST00000618167 288 ntBASIC4.68□□□□□ -1.66
COL28A1Q2UY09 AC018926.3-201ENST00000618841 406 ntBASIC4.68□□□□□ -1.66
COL28A1Q2UY09 AP000648.2-201ENST00000624182 404 ntBASIC4.68□□□□□ -1.66
COL28A1Q2UY09 AP002967.1-201ENST00000624203 539 ntBASIC4.68□□□□□ -1.66
COL28A1Q2UY09 OR1S1-201ENST00000624470 978 ntBASIC4.68□□□□□ -1.66
COL28A1Q2UY09 AC116563.2-201ENST00000624751 535 ntBASIC4.68□□□□□ -1.66
COL28A1Q2UY09 LINC01232-203ENST00000625369 576 ntTSL 4 BASIC4.68□□□□□ -1.66
COL28A1Q2UY09 AC009303.2-205ENST00000627670 1091 ntTSL 5 BASIC4.68□□□□□ -1.66
COL28A1Q2UY09 LINC01748-204ENST00000635048 5678 ntTSL 5 BASIC4.68□□□□□ -1.66
COL28A1Q2UY09 AP000756.2-201ENST00000624168 2567 ntBASIC4.68□□□□□ -1.66
COL28A1Q2UY09 FANCI-201ENST00000300027 4713 ntAPPRIS P3 TSL 5 BASIC4.68□□□□□ -1.66
COL28A1Q2UY09 AC000123.3-201ENST00000624029 4975 ntBASIC4.68□□□□□ -1.66
COL28A1Q2UY09 RNF182-207ENST00000537663 3382 ntAPPRIS P1 TSL 4 BASIC4.68□□□□□ -1.66
COL28A1Q2UY09 AC090017.1-201ENST00000548612 1779 ntBASIC4.68□□□□□ -1.66
COL28A1Q2UY09 DPP10-204ENST00000409163 3883 ntAPPRIS ALT2 TSL 2 BASIC4.68□□□□□ -1.66
COL28A1Q2UY09 SYT14-206ENST00000537238 5208 ntAPPRIS ALT2 TSL 5 BASIC4.68□□□□□ -1.66
COL28A1Q2UY09 LRRC19-201ENST00000380055 3609 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
COL28A1Q2UY09 AL157756.1-201ENST00000532515 2859 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
COL28A1Q2UY09 MYB-226ENST00000528774 2277 ntAPPRIS ALT1 TSL 1 (best) BASIC4.67□□□□□ -1.66
COL28A1Q2UY09 PIGW-206ENST00000620233 2264 ntAPPRIS P1 TSL 2 BASIC4.67□□□□□ -1.66
COL28A1Q2UY09 BTBD10P1-201ENST00000549824 1352 ntBASIC4.67□□□□□ -1.66
COL28A1Q2UY09 RBBP6-202ENST00000348022 5739 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
COL28A1Q2UY09 AC138393.1-206ENST00000540997 1886 ntBASIC4.67□□□□□ -1.66
COL28A1Q2UY09 ING3-205ENST00000445699 1723 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
COL28A1Q2UY09 OTOGL-204ENST00000547103 8032 ntAPPRIS ALT2 TSL 5 BASIC4.67□□□□□ -1.66
COL28A1Q2UY09 RBMS3-205ENST00000434693 8540 ntTSL 5 BASIC4.67□□□□□ -1.66
COL28A1Q2UY09 CENPI-201ENST00000372926 2375 ntAPPRIS ALT2 TSL 5 BASIC4.67□□□□□ -1.66
COL28A1Q2UY09 RNA5SP509-201ENST00000364577 119 ntBASIC4.67□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 118 ms