Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 AC126323.6-202ENST00000568092 3511 ntBASIC4.71□□□□□ -1.66
COL28A1Q2UY09 C6orf10-210ENST00000617061 1904 ntAPPRIS ALT2 TSL 5 BASIC4.71□□□□□ -1.66
COL28A1Q2UY09 LYST-202ENST00000389794 12985 ntTSL 5 BASIC4.71□□□□□ -1.66
COL28A1Q2UY09 CYP1D1P-201ENST00000416662 1433 ntBASIC4.71□□□□□ -1.66
COL28A1Q2UY09 ZBTB38-220ENST00000514251 7683 ntAPPRIS P1 TSL 2 BASIC4.71□□□□□ -1.66
COL28A1Q2UY09 MMRN1-204ENST00000508372 3234 ntTSL 2 BASIC4.7□□□□□ -1.66
COL28A1Q2UY09 LINC01625-201ENST00000454788 1690 ntTSL 2 BASIC4.7□□□□□ -1.66
COL28A1Q2UY09 AC107027.3-201ENST00000565095 3473 ntBASIC4.7□□□□□ -1.66
COL28A1Q2UY09 MYBPC1-205ENST00000536007 3512 ntAPPRIS ALT2 TSL 1 (best) BASIC4.7□□□□□ -1.66
COL28A1Q2UY09 MYBPC1-206ENST00000541119 3533 ntAPPRIS ALT2 TSL 1 (best) BASIC4.7□□□□□ -1.66
COL28A1Q2UY09 RPS6KA5-207ENST00000614987 26795 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
COL28A1Q2UY09 OR5AC2-201ENST00000358642 930 ntAPPRIS P1 BASIC4.7□□□□□ -1.66
COL28A1Q2UY09 RNU1-87P-201ENST00000363727 170 ntBASIC4.7□□□□□ -1.66
COL28A1Q2UY09 S100G-201ENST00000380200 455 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
COL28A1Q2UY09 SNORA70F-201ENST00000384142 135 ntBASIC4.7□□□□□ -1.66
COL28A1Q2UY09 TRAV23DV6-201ENST00000390451 409 ntAPPRIS P1 BASIC4.7□□□□□ -1.66
COL28A1Q2UY09 IL6-203ENST00000401651 539 ntTSL 2 BASIC4.7□□□□□ -1.66
COL28A1Q2UY09 AL390316.1-201ENST00000406279 553 ntBASIC4.7□□□□□ -1.66
COL28A1Q2UY09 CACYBP-203ENST00000406752 243 ntTSL 5 BASIC4.7□□□□□ -1.66
COL28A1Q2UY09 AF186996.5-201ENST00000418098 904 ntBASIC4.7□□□□□ -1.66
COL28A1Q2UY09 NANOGP5-201ENST00000424456 877 ntBASIC4.7□□□□□ -1.66
COL28A1Q2UY09 DYNLL1P7-201ENST00000429273 258 ntBASIC4.7□□□□□ -1.66
COL28A1Q2UY09 NRBF2P3-201ENST00000432731 865 ntBASIC4.7□□□□□ -1.66
COL28A1Q2UY09 RPL39L-202ENST00000433055 749 ntAPPRIS P1 TSL 2 BASIC4.7□□□□□ -1.66
COL28A1Q2UY09 AP000855.1-201ENST00000433210 636 ntTSL 2 BASIC4.7□□□□□ -1.66
COL28A1Q2UY09 PPIAP13-201ENST00000434706 478 ntBASIC4.7□□□□□ -1.66
COL28A1Q2UY09 AC003092.1-202ENST00000438538 743 ntTSL 3 BASIC4.7□□□□□ -1.66
COL28A1Q2UY09 AC092809.1-201ENST00000441469 474 ntBASIC4.7□□□□□ -1.66
COL28A1Q2UY09 OR10R1P-201ENST00000441524 1141 ntBASIC4.7□□□□□ -1.66
COL28A1Q2UY09 MTCYBP42-201ENST00000444653 1130 ntBASIC4.7□□□□□ -1.66
COL28A1Q2UY09 TPTE2P6-202ENST00000445572 1007 ntBASIC4.7□□□□□ -1.66
COL28A1Q2UY09 AC007000.3-201ENST00000459742 617 ntTSL 3 BASIC4.7□□□□□ -1.66
COL28A1Q2UY09 AC011276.1-201ENST00000469688 323 ntBASIC4.7□□□□□ -1.66
COL28A1Q2UY09 LINC02050-201ENST00000473938 712 ntTSL 3 BASIC4.7□□□□□ -1.66
COL28A1Q2UY09 AC091959.2-201ENST00000477363 321 ntBASIC4.7□□□□□ -1.66
COL28A1Q2UY09 RN7SL809P-201ENST00000482040 297 ntBASIC4.7□□□□□ -1.66
COL28A1Q2UY09 AC098799.3-201ENST00000506095 438 ntBASIC4.7□□□□□ -1.66
COL28A1Q2UY09 LINC00977-201ENST00000509893 1163 ntTSL 2 BASIC4.7□□□□□ -1.66
COL28A1Q2UY09 AC011396.2-202ENST00000511390 375 ntTSL 3 BASIC4.7□□□□□ -1.66
COL28A1Q2UY09 ENPP7P9-201ENST00000514456 627 ntBASIC4.7□□□□□ -1.66
COL28A1Q2UY09 MIR2116-201ENST00000517221 80 ntBASIC4.7□□□□□ -1.66
COL28A1Q2UY09 AC012339.2-201ENST00000523996 453 ntBASIC4.7□□□□□ -1.66
COL28A1Q2UY09 AC013714.1-201ENST00000524707 747 ntTSL 3 BASIC4.7□□□□□ -1.66
COL28A1Q2UY09 OR10V3P-201ENST00000525712 725 ntBASIC4.7□□□□□ -1.66
COL28A1Q2UY09 OR5M2P-201ENST00000529003 936 ntBASIC4.7□□□□□ -1.66
COL28A1Q2UY09 DEFB130C-202ENST00000530001 230 ntBASIC4.7□□□□□ -1.66
COL28A1Q2UY09 LRRC37A5P-202ENST00000536054 1095 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
COL28A1Q2UY09 AC007527.1-202ENST00000543347 382 ntTSL 3 BASIC4.7□□□□□ -1.66
COL28A1Q2UY09 RAD51AP1-213ENST00000544927 787 ntTSL 4 BASIC4.7□□□□□ -1.66
COL28A1Q2UY09 NOVA1-AS1-203ENST00000552101 468 ntTSL 3 BASIC4.7□□□□□ -1.66
COL28A1Q2UY09 AL158211.1-201ENST00000566763 763 ntBASIC4.7□□□□□ -1.66
COL28A1Q2UY09 AC123786.2-201ENST00000603459 275 ntBASIC4.7□□□□□ -1.66
COL28A1Q2UY09 AC020910.3-201ENST00000603701 874 ntBASIC4.7□□□□□ -1.66
COL28A1Q2UY09 RNU4-5P-201ENST00000607255 135 ntBASIC4.7□□□□□ -1.66
COL28A1Q2UY09 MMP13-203ENST00000615555 1152 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
COL28A1Q2UY09 Metazoa_SRP.181-201ENST00000616636 288 ntBASIC4.7□□□□□ -1.66
COL28A1Q2UY09 AC006133.1-201ENST00000617106 264 ntBASIC4.7□□□□□ -1.66
COL28A1Q2UY09 VN1R7P-201ENST00000619242 903 ntBASIC4.7□□□□□ -1.66
COL28A1Q2UY09 AP001005.3-201ENST00000622049 129 ntBASIC4.7□□□□□ -1.66
COL28A1Q2UY09 Metazoa_SRP.93-201ENST00000622525 276 ntBASIC4.7□□□□□ -1.66
COL28A1Q2UY09 LINC01338-201ENST00000627179 632 ntTSL 3 BASIC4.7□□□□□ -1.66
COL28A1Q2UY09 AL596275.2-204ENST00000641628 552 ntBASIC4.7□□□□□ -1.66
COL28A1Q2UY09 AL596275.2-206ENST00000641957 626 ntBASIC4.7□□□□□ -1.66
COL28A1Q2UY09 ANKRD30A-201ENST00000361713 4405 ntAPPRIS P2 TSL 5 BASIC4.7□□□□□ -1.66
COL28A1Q2UY09 ARHGEF12-202ENST00000397843 9660 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
COL28A1Q2UY09 LRP6-201ENST00000261349 10020 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
COL28A1Q2UY09 TET2-202ENST00000305737 9233 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
COL28A1Q2UY09 OR4E2-202ENST00000641524 2855 ntAPPRIS P1 BASIC4.7□□□□□ -1.66
COL28A1Q2UY09 DLX6-AS1-201ENST00000430027 15364 ntTSL 2 BASIC4.7□□□□□ -1.66
COL28A1Q2UY09 MRPL35-202ENST00000337109 3727 ntAPPRIS P4 TSL 1 (best) BASIC4.7□□□□□ -1.66
COL28A1Q2UY09 ARHGAP5-210ENST00000556611 4824 ntAPPRIS ALT1 TSL 5 BASIC4.7□□□□□ -1.66
COL28A1Q2UY09 ATP13A3-211ENST00000619199 5227 ntTSL 2 BASIC4.69□□□□□ -1.66
COL28A1Q2UY09 AL118496.1-201ENST00000440201 1812 ntBASIC4.69□□□□□ -1.66
COL28A1Q2UY09 AC007681.1-201ENST00000604271 3438 ntTSL 4 BASIC4.69□□□□□ -1.66
COL28A1Q2UY09 LTN1-202ENST00000389194 7749 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
COL28A1Q2UY09 PSMA4-201ENST00000044462 4411 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
COL28A1Q2UY09 AC090826.1-202ENST00000562009 3337 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
COL28A1Q2UY09 PHKBP1-201ENST00000450951 1951 ntBASIC4.69□□□□□ -1.66
COL28A1Q2UY09 CEP97-201ENST00000341893 8361 ntAPPRIS P3 TSL 1 (best) BASIC4.69□□□□□ -1.66
COL28A1Q2UY09 AC111188.2-201ENST00000529697 1387 ntBASIC4.69□□□□□ -1.66
COL28A1Q2UY09 LINGO2-201ENST00000308675 3031 ntAPPRIS P1 TSL 5 BASIC4.69□□□□□ -1.66
COL28A1Q2UY09 AP001273.1-201ENST00000624493 3152 ntBASIC4.69□□□□□ -1.66
COL28A1Q2UY09 ZNF29P-201ENST00000225587 168 ntBASIC4.69□□□□□ -1.66
COL28A1Q2UY09 RNU4-44P-201ENST00000363050 141 ntBASIC4.69□□□□□ -1.66
COL28A1Q2UY09 TEX35-205ENST00000367643 802 ntAPPRIS ALT2 TSL 2 BASIC4.69□□□□□ -1.66
COL28A1Q2UY09 TRAV26-2-201ENST00000390460 327 ntAPPRIS P1 BASIC4.69□□□□□ -1.66
COL28A1Q2UY09 OR6C69P-201ENST00000394268 893 ntBASIC4.69□□□□□ -1.66
COL28A1Q2UY09 AL049697.2-201ENST00000403708 294 ntBASIC4.69□□□□□ -1.66
COL28A1Q2UY09 RN7SKP199-201ENST00000410325 305 ntBASIC4.69□□□□□ -1.66
COL28A1Q2UY09 NRBF2P2-201ENST00000413087 861 ntBASIC4.69□□□□□ -1.66
COL28A1Q2UY09 AC009302.1-201ENST00000417147 390 ntBASIC4.69□□□□□ -1.66
COL28A1Q2UY09 RPL36AP10-201ENST00000421785 322 ntBASIC4.69□□□□□ -1.66
COL28A1Q2UY09 AC009238.2-201ENST00000431026 355 ntBASIC4.69□□□□□ -1.66
COL28A1Q2UY09 AC090617.2-201ENST00000433167 404 ntTSL 3 BASIC4.69□□□□□ -1.66
COL28A1Q2UY09 AC093414.1-201ENST00000434712 514 ntBASIC4.69□□□□□ -1.66
COL28A1Q2UY09 AP000943.1-201ENST00000438416 712 ntTSL 3 BASIC4.69□□□□□ -1.66
COL28A1Q2UY09 ACTR3P2-201ENST00000439585 1257 ntBASIC4.69□□□□□ -1.66
COL28A1Q2UY09 OR7E125P-201ENST00000443450 846 ntBASIC4.69□□□□□ -1.66
COL28A1Q2UY09 AL034380.1-201ENST00000448791 306 ntTSL 3 BASIC4.69□□□□□ -1.66
COL28A1Q2UY09 AL589963.1-201ENST00000449282 727 ntTSL 3 BASIC4.69□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 79.6 ms