Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 AC092652.1-202ENST00000413315 587 ntTSL 4 BASIC4.11□□□□□ -1.75
COL4A4P53420 AL391219.1-201ENST00000422570 483 ntBASIC4.11□□□□□ -1.75
COL4A4P53420 BTG3P1-201ENST00000435859 716 ntBASIC4.11□□□□□ -1.75
COL4A4P53420 AL360091.1-201ENST00000447949 496 ntTSL 5 BASIC4.11□□□□□ -1.75
COL4A4P53420 GAS5-223ENST00000452197 483 ntTSL 3 BASIC4.11□□□□□ -1.75
COL4A4P53420 RPS29P2-201ENST00000479278 136 ntBASIC4.11□□□□□ -1.75
COL4A4P53420 AC139783.2-201ENST00000504847 1145 ntBASIC4.11□□□□□ -1.75
COL4A4P53420 AC027288.1-203ENST00000552167 567 ntTSL 4 BASIC4.11□□□□□ -1.75
COL4A4P53420 AC008056.1-201ENST00000553322 394 ntTSL 3 BASIC4.11□□□□□ -1.75
COL4A4P53420 CSNK1A1P1-202ENST00000563423 981 ntBASIC4.11□□□□□ -1.75
COL4A4P53420 AC092138.1-201ENST00000568659 472 ntTSL 2 BASIC4.11□□□□□ -1.75
COL4A4P53420 OR7A8P-201ENST00000595427 913 ntBASIC4.11□□□□□ -1.75
COL4A4P53420 AL157392.3-211ENST00000599378 509 ntTSL 4 BASIC4.11□□□□□ -1.75
COL4A4P53420 AC079684.1-201ENST00000621405 437 ntBASIC4.11□□□□□ -1.75
COL4A4P53420 SLC30A6-205ENST00000435660 4776 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
COL4A4P53420 SCN1A-218ENST00000640036 8131 ntAPPRIS ALT1 TSL 5 BASIC4.11□□□□□ -1.75
COL4A4P53420 LRRC49-204ENST00000544974 6605 ntTSL 2 BASIC4.11□□□□□ -1.75
COL4A4P53420 LRIT3-202ENST00000594814 3566 ntAPPRIS P1 TSL 5 BASIC4.11□□□□□ -1.75
COL4A4P53420 SDHC-202ENST00000367975 13566 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
COL4A4P53420 PARD3B-212ENST00000613457 7559 ntTSL 5 BASIC4.11□□□□□ -1.75
COL4A4P53420 RTN4-209ENST00000405240 4061 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
COL4A4P53420 SLAIN2-205ENST00000512093 4219 ntTSL 5 BASIC4.1□□□□□ -1.75
COL4A4P53420 FZD3-201ENST00000240093 13736 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
COL4A4P53420 UBE3AP2-201ENST00000429033 2259 ntBASIC4.1□□□□□ -1.75
COL4A4P53420 MYO9A-203ENST00000444904 7749 ntAPPRIS P2 TSL 5 BASIC4.1□□□□□ -1.75
COL4A4P53420 BCL2A1-201ENST00000267953 1033 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
COL4A4P53420 SYF2-202ENST00000354361 926 ntTSL 2 BASIC4.1□□□□□ -1.75
COL4A4P53420 MIR513A2-201ENST00000385249 127 ntBASIC4.1□□□□□ -1.75
COL4A4P53420 SOD2P1-201ENST00000396543 562 ntBASIC4.1□□□□□ -1.75
COL4A4P53420 RPS20P25-201ENST00000412447 352 ntBASIC4.1□□□□□ -1.75
COL4A4P53420 AC092155.1-202ENST00000416111 932 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
COL4A4P53420 RPS26P15-201ENST00000488067 348 ntBASIC4.1□□□□□ -1.75
COL4A4P53420 AP000563.1-201ENST00000490865 758 ntBASIC4.1□□□□□ -1.75
COL4A4P53420 LINC02213-202ENST00000506021 774 ntTSL 2 BASIC4.1□□□□□ -1.75
COL4A4P53420 IGHV3-63-201ENST00000518422 341 ntBASIC4.1□□□□□ -1.75
COL4A4P53420 AC021733.1-201ENST00000519786 325 ntTSL 3 BASIC4.1□□□□□ -1.75
COL4A4P53420 AC084024.3-201ENST00000520598 562 ntTSL 4 BASIC4.1□□□□□ -1.75
COL4A4P53420 AC087341.1-201ENST00000521490 491 ntTSL 2 BASIC4.1□□□□□ -1.75
COL4A4P53420 LINC01965-204ENST00000545549 575 ntTSL 4 BASIC4.1□□□□□ -1.75
COL4A4P53420 LINC01584-202ENST00000563990 852 ntTSL 3 BASIC4.1□□□□□ -1.75
COL4A4P53420 AC105020.2-201ENST00000564683 572 ntTSL 5 BASIC4.1□□□□□ -1.75
COL4A4P53420 AC012603.1-201ENST00000606424 528 ntBASIC4.1□□□□□ -1.75
COL4A4P53420 AL133445.2-201ENST00000611191 527 ntBASIC4.1□□□□□ -1.75
COL4A4P53420 AC022960.2-201ENST00000616300 666 ntBASIC4.1□□□□□ -1.75
COL4A4P53420 AC011287.1-204ENST00000640300 1213 ntTSL 5 BASIC4.1□□□□□ -1.75
COL4A4P53420 WDR7-201ENST00000254442 14083 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
COL4A4P53420 LINC01197-202ENST00000555332 3568 ntTSL 3 BASIC4.1□□□□□ -1.75
COL4A4P53420 PCDH15-206ENST00000373965 9237 ntAPPRIS ALT2 TSL 5 BASIC4.1□□□□□ -1.75
COL4A4P53420 AC011604.2-201ENST00000381541 2268 ntAPPRIS ALT2 TSL 2 BASIC4.1□□□□□ -1.75
COL4A4P53420 SLFN5-201ENST00000299977 10591 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
COL4A4P53420 GABRG2-221ENST00000639683 3600 ntTSL 5 BASIC4.1□□□□□ -1.75
COL4A4P53420 KMT2D-201ENST00000301067 19419 ntAPPRIS P1 TSL 5 BASIC4.1□□□□□ -1.75
COL4A4P53420 AC009229.4-201ENST00000623854 1947 ntBASIC4.1□□□□□ -1.75
COL4A4P53420 POLK-201ENST00000241436 5911 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
COL4A4P53420 MAP3K7-202ENST00000369325 4633 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
COL4A4P53420 MYB-213ENST00000525369 2866 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
COL4A4P53420 SEC23A-202ENST00000537403 4215 ntTSL 2 BASIC4.1□□□□□ -1.75
COL4A4P53420 FAR2-203ENST00000547116 1787 ntTSL 2 BASIC4.1□□□□□ -1.75
COL4A4P53420 RNU1-33P-201ENST00000364249 162 ntBASIC4.1□□□□□ -1.75
COL4A4P53420 NPM1P38-201ENST00000403835 865 ntBASIC4.1□□□□□ -1.75
COL4A4P53420 GNG5P5-201ENST00000420444 220 ntBASIC4.1□□□□□ -1.75
COL4A4P53420 AC005300.1-201ENST00000428401 373 ntBASIC4.1□□□□□ -1.75
COL4A4P53420 HIGD1AP4-201ENST00000430194 280 ntBASIC4.1□□□□□ -1.75
COL4A4P53420 FAM53B-AS1-201ENST00000432699 558 ntTSL 2 BASIC4.1□□□□□ -1.75
COL4A4P53420 HMGB1P37-201ENST00000439613 609 ntBASIC4.1□□□□□ -1.75
COL4A4P53420 APOOP2-201ENST00000461561 539 ntBASIC4.1□□□□□ -1.75
COL4A4P53420 PTP4A2-203ENST00000470404 575 ntTSL 3 BASIC4.1□□□□□ -1.75
COL4A4P53420 AC007298.1-201ENST00000547346 656 ntTSL 3 BASIC4.1□□□□□ -1.75
COL4A4P53420 AC020914.6-201ENST00000594327 272 ntBASIC4.1□□□□□ -1.75
COL4A4P53420 AL109620.1-201ENST00000618738 1197 ntBASIC4.1□□□□□ -1.75
COL4A4P53420 AL391262.2-201ENST00000622466 494 ntBASIC4.1□□□□□ -1.75
COL4A4P53420 LINC01002-206ENST00000631772 539 ntTSL 4 BASIC4.1□□□□□ -1.75
COL4A4P53420 MIR181A1HG-203ENST00000436880 2308 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
COL4A4P53420 FRAS1-207ENST00000512123 15624 ntAPPRIS P1 TSL 5 BASIC4.09□□□□□ -1.75
COL4A4P53420 AK9-202ENST00000355283 2499 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
COL4A4P53420 SCN1A-209ENST00000635750 8299 ntAPPRIS P3 TSL 5 BASIC4.09□□□□□ -1.75
COL4A4P53420 PARP8-201ENST00000281631 7177 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
COL4A4P53420 EIF3E-201ENST00000220849 1543 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
COL4A4P53420 RBMS1-203ENST00000409075 1550 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
COL4A4P53420 PTPRB-202ENST00000334414 12316 ntAPPRIS P4 TSL 1 (best) BASIC4.09□□□□□ -1.75
COL4A4P53420 C8orf34-203ENST00000348340 3571 ntAPPRIS ALT2 TSL 1 (best) BASIC4.09□□□□□ -1.75
COL4A4P53420 CDY11P-201ENST00000447168 1651 ntBASIC4.09□□□□□ -1.75
COL4A4P53420 SCN11A-202ENST00000444237 5729 ntAPPRIS ALT2 TSL 5 BASIC4.09□□□□□ -1.75
COL4A4P53420 OR8A1-203ENST00000641670 5709 ntAPPRIS P1 BASIC4.09□□□□□ -1.75
COL4A4P53420 OR5AU1-203ENST00000641697 7755 ntAPPRIS P1 BASIC4.09□□□□□ -1.75
COL4A4P53420 LIX1L-AS1-201ENST00000366105 377 ntTSL 5 BASIC4.09□□□□□ -1.76
COL4A4P53420 IFNA21-201ENST00000380225 1024 ntAPPRIS P1 BASIC4.09□□□□□ -1.76
COL4A4P53420 TTTY17A-201ENST00000416110 166 ntTSL 1 (best) BASIC4.09□□□□□ -1.76
COL4A4P53420 TTTY17C-201ENST00000421387 166 ntTSL 1 (best) BASIC4.09□□□□□ -1.76
COL4A4P53420 TTTY17B-201ENST00000441906 166 ntTSL 1 (best) BASIC4.09□□□□□ -1.76
COL4A4P53420 RANP8-201ENST00000444720 713 ntBASIC4.09□□□□□ -1.76
COL4A4P53420 AC099677.4-201ENST00000446786 380 ntTSL 3 BASIC4.09□□□□□ -1.76
COL4A4P53420 CYCSP35-201ENST00000451978 304 ntBASIC4.09□□□□□ -1.76
COL4A4P53420 AC011396.1-201ENST00000507391 312 ntTSL 3 BASIC4.09□□□□□ -1.76
COL4A4P53420 MYLK-AS2-202ENST00000515464 754 ntTSL 2 BASIC4.09□□□□□ -1.76
COL4A4P53420 AC068389.4-201ENST00000531379 689 ntTSL 3 BASIC4.09□□□□□ -1.76
COL4A4P53420 AC026888.1-201ENST00000553348 559 ntTSL 4 BASIC4.09□□□□□ -1.76
COL4A4P53420 AC090506.1-201ENST00000583089 572 ntTSL 4 BASIC4.09□□□□□ -1.76
COL4A4P53420 DYNAP-202ENST00000585973 1102 ntAPPRIS ALT2 TSL 3 BASIC4.09□□□□□ -1.76
COL4A4P53420 AC011473.1-201ENST00000601280 443 ntTSL 2 BASIC4.09□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 73.2 ms