Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 MTND6P6-201ENST00000478031 263 ntBASIC4.85□□□□□ -1.63
COL18A1P39060 AC080162.1-201ENST00000480764 491 ntTSL 3 BASIC4.85□□□□□ -1.63
COL18A1P39060 AGGF1P3-201ENST00000493675 1213 ntBASIC4.85□□□□□ -1.63
COL18A1P39060 AC097372.3-201ENST00000503593 522 ntTSL 3 BASIC4.85□□□□□ -1.63
COL18A1P39060 MORF4L2P1-201ENST00000503761 858 ntBASIC4.85□□□□□ -1.63
COL18A1P39060 BTG4P1-201ENST00000510421 183 ntBASIC4.85□□□□□ -1.63
COL18A1P39060 AC087362.1-201ENST00000527912 434 ntTSL 5 BASIC4.85□□□□□ -1.63
COL18A1P39060 UBTFL9-201ENST00000534504 1148 ntBASIC4.85□□□□□ -1.63
COL18A1P39060 CYP4A43P-201ENST00000568156 121 ntBASIC4.85□□□□□ -1.63
COL18A1P39060 MTND6P33-201ENST00000571794 183 ntBASIC4.85□□□□□ -1.63
COL18A1P39060 AC009303.3-201ENST00000591103 736 ntBASIC4.85□□□□□ -1.63
COL18A1P39060 AC125494.3-201ENST00000602759 455 ntBASIC4.85□□□□□ -1.63
COL18A1P39060 YPEL5P2-201ENST00000605553 359 ntBASIC4.85□□□□□ -1.63
COL18A1P39060 SLC38A9-223ENST00000515629 2673 ntTSL 2 BASIC4.85□□□□□ -1.63
COL18A1P39060 SCN1A-201ENST00000303395 8533 ntAPPRIS ALT1 TSL 5 BASIC4.85□□□□□ -1.63
COL18A1P39060 AC024940.1-203ENST00000398963 4423 ntAPPRIS ALT2 TSL 5 BASIC4.85□□□□□ -1.63
COL18A1P39060 CSMD1-215ENST00000537824 13512 ntAPPRIS ALT2 TSL 5 BASIC4.85□□□□□ -1.63
COL18A1P39060 TLR3-201ENST00000296795 6015 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
COL18A1P39060 LPAR4-201ENST00000435339 2611 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
COL18A1P39060 AC139426.3-201ENST00000605648 2059 ntBASIC4.84□□□□□ -1.63
COL18A1P39060 CDC14A-206ENST00000635056 2056 ntTSL 2 BASIC4.84□□□□□ -1.63
COL18A1P39060 OR10D3-202ENST00000641351 3561 ntAPPRIS P1 BASIC4.84□□□□□ -1.63
COL18A1P39060 OR10D3-203ENST00000641546 3566 ntAPPRIS P1 BASIC4.84□□□□□ -1.63
COL18A1P39060 CSN1S1-201ENST00000246891 985 ntAPPRIS P3 TSL 1 (best) BASIC4.84□□□□□ -1.63
COL18A1P39060 SDCBPP2-201ENST00000424643 885 ntBASIC4.84□□□□□ -1.63
COL18A1P39060 RPL5P24-201ENST00000463742 885 ntBASIC4.84□□□□□ -1.63
COL18A1P39060 LINC02383-201ENST00000508563 582 ntTSL 3 BASIC4.84□□□□□ -1.63
COL18A1P39060 RNU2-27P-201ENST00000516185 142 ntBASIC4.84□□□□□ -1.63
COL18A1P39060 AC007563.2-202ENST00000607591 394 ntTSL 3 BASIC4.84□□□□□ -1.63
COL18A1P39060 ADPRM-204ENST00000609540 1138 ntTSL 5 BASIC4.84□□□□□ -1.63
COL18A1P39060 ATF7IP-209ENST00000536444 8774 ntAPPRIS ALT2 TSL 1 (best) BASIC4.84□□□□□ -1.63
COL18A1P39060 IGF1-202ENST00000337514 7359 ntAPPRIS P3 TSL 1 (best) BASIC4.84□□□□□ -1.63
COL18A1P39060 AC090510.1-202ENST00000500850 2017 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
COL18A1P39060 OR2AG1-202ENST00000641258 6993 ntAPPRIS P1 BASIC4.84□□□□□ -1.63
COL18A1P39060 KLRC1-201ENST00000347831 1332 ntAPPRIS ALT2 TSL 1 (best) BASIC4.84□□□□□ -1.63
COL18A1P39060 MFN1-201ENST00000263969 2754 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
COL18A1P39060 AC118273.1-201ENST00000525324 3006 ntBASIC4.84□□□□□ -1.63
COL18A1P39060 EMSY-215ENST00000533248 3798 ntTSL 1 (best) BASIC4.84□□□□□ -1.64
COL18A1P39060 FPGT-TNNI3K-202ENST00000370895 7566 ntTSL 2 BASIC4.84□□□□□ -1.64
COL18A1P39060 TRGC1-201ENST00000443402 2730 ntAPPRIS P1 BASIC4.84□□□□□ -1.64
COL18A1P39060 LYST-201ENST00000389793 13480 ntAPPRIS P1 TSL 5 BASIC4.84□□□□□ -1.64
COL18A1P39060 TBC1D31-214ENST00000522420 3167 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
COL18A1P39060 AP5M1-201ENST00000261558 11737 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
COL18A1P39060 LCOR-204ENST00000371103 10342 ntAPPRIS P3 TSL 1 (best) BASIC4.83□□□□□ -1.64
COL18A1P39060 Y_RNA.500-201ENST00000384466 111 ntBASIC4.83□□□□□ -1.64
COL18A1P39060 MS4A4E-201ENST00000398984 479 ntTSL 5 BASIC4.83□□□□□ -1.64
COL18A1P39060 LINC00894-201ENST00000413076 403 ntTSL 3 BASIC4.83□□□□□ -1.64
COL18A1P39060 AC012594.1-271ENST00000438635 736 ntTSL 3 BASIC4.83□□□□□ -1.64
COL18A1P39060 AC025437.3-201ENST00000523178 771 ntTSL 5 BASIC4.83□□□□□ -1.64
COL18A1P39060 TRAV15-201ENST00000556680 249 ntBASIC4.83□□□□□ -1.64
COL18A1P39060 MIR4325-201ENST00000583049 90 ntBASIC4.83□□□□□ -1.64
COL18A1P39060 CT45A3-201ENST00000597510 1076 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
COL18A1P39060 AC068790.5-201ENST00000602741 355 ntBASIC4.83□□□□□ -1.64
COL18A1P39060 CT45A2-201ENST00000605791 1076 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
COL18A1P39060 CT45A5-202ENST00000617203 726 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
COL18A1P39060 LYRM2-211ENST00000626778 696 ntTSL 5 BASIC4.83□□□□□ -1.64
COL18A1P39060 FTO-204ENST00000463855 3056 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
COL18A1P39060 INO80D-201ENST00000403263 14136 ntAPPRIS P1 TSL 5 BASIC4.83□□□□□ -1.64
COL18A1P39060 MIR181A1HG-203ENST00000436880 2308 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
COL18A1P39060 PRRC1-202ENST00000442138 5504 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
COL18A1P39060 OR2AP1-202ENST00000641114 1548 ntAPPRIS P1 BASIC4.83□□□□□ -1.64
COL18A1P39060 SLC10A2-201ENST00000245312 3779 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
COL18A1P39060 MECOM-202ENST00000433243 3508 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
COL18A1P39060 RNU6-1279P-201ENST00000383917 103 ntBASIC4.83□□□□□ -1.64
COL18A1P39060 LINC00427-201ENST00000412722 430 ntTSL 2 BASIC4.83□□□□□ -1.64
COL18A1P39060 AL035458.1-201ENST00000433096 585 ntBASIC4.83□□□□□ -1.64
COL18A1P39060 AC009365.2-201ENST00000453078 799 ntTSL 3 BASIC4.83□□□□□ -1.64
COL18A1P39060 AP001486.1-201ENST00000463339 476 ntBASIC4.83□□□□□ -1.64
COL18A1P39060 AC078828.1-201ENST00000471993 458 ntTSL 3 BASIC4.83□□□□□ -1.64
COL18A1P39060 PHBP14-201ENST00000512887 367 ntBASIC4.83□□□□□ -1.64
COL18A1P39060 AC105999.1-201ENST00000518722 473 ntTSL 3 BASIC4.83□□□□□ -1.64
COL18A1P39060 AC012146.1-201ENST00000571138 462 ntTSL 2 BASIC4.83□□□□□ -1.64
COL18A1P39060 AC115621.1-201ENST00000604653 858 ntBASIC4.83□□□□□ -1.64
COL18A1P39060 MIR7112-201ENST00000616126 65 ntBASIC4.83□□□□□ -1.64
COL18A1P39060 ATL2-217ENST00000629272 1242 ntTSL 5 BASIC4.83□□□□□ -1.64
COL18A1P39060 FIGN-201ENST00000333129 9536 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
COL18A1P39060 AL499616.1-201ENST00000415437 2633 ntTSL 2 BASIC4.83□□□□□ -1.64
COL18A1P39060 DMXL2-202ENST00000449909 7465 ntAPPRIS ALT2 TSL 1 (best) BASIC4.82□□□□□ -1.64
COL18A1P39060 UNC80-203ENST00000439458 13562 ntAPPRIS P1 TSL 5 BASIC4.82□□□□□ -1.64
COL18A1P39060 LINC02232-201ENST00000509932 4079 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
COL18A1P39060 EPC1-203ENST00000375110 3909 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
COL18A1P39060 MTRNR2L10-201ENST00000545075 1530 ntAPPRIS P1 BASIC4.82□□□□□ -1.64
COL18A1P39060 EIF1AY-201ENST00000361365 1390 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
COL18A1P39060 NHSL2-204ENST00000631375 12593 ntTSL 5 BASIC4.82□□□□□ -1.64
COL18A1P39060 MOXD1-201ENST00000336749 2950 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
COL18A1P39060 CACNA1E-210ENST00000621791 16171 ntAPPRIS ALT2 TSL 1 (best) BASIC4.82□□□□□ -1.64
COL18A1P39060 FAM169A-201ENST00000389156 5990 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
COL18A1P39060 RASA1-202ENST00000456692 3776 ntAPPRIS ALT2 TSL 1 (best) BASIC4.82□□□□□ -1.64
COL18A1P39060 HCFC2P1-201ENST00000392864 1592 ntBASIC4.82□□□□□ -1.64
COL18A1P39060 MTUS1-201ENST00000262102 6160 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
COL18A1P39060 CDKL4-202ENST00000395035 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC4.82□□□□□ -1.64
COL18A1P39060 AC005162.2-201ENST00000411479 578 ntTSL 4 BASIC4.82□□□□□ -1.64
COL18A1P39060 GSTM3P2-201ENST00000412746 530 ntBASIC4.82□□□□□ -1.64
COL18A1P39060 AL359634.1-201ENST00000429807 1179 ntTSL 5 BASIC4.82□□□□□ -1.64
COL18A1P39060 RPS15AP29-201ENST00000445539 400 ntBASIC4.82□□□□□ -1.64
COL18A1P39060 RN7SL809P-201ENST00000482040 297 ntBASIC4.82□□□□□ -1.64
COL18A1P39060 FOXD1-AS1-201ENST00000514661 424 ntTSL 3 BASIC4.82□□□□□ -1.64
COL18A1P39060 GYPA-211ENST00000535709 695 ntAPPRIS ALT2 TSL 1 (best) BASIC4.82□□□□□ -1.64
COL18A1P39060 AC073864.1-201ENST00000540161 562 ntTSL 4 BASIC4.82□□□□□ -1.64
COL18A1P39060 AC068993.1-201ENST00000546724 589 ntBASIC4.82□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 89.9 ms