Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 EPS8-209ENST00000542903 1858 ntTSL 2 BASIC6.45□□□□□ -1.38
CCDC39Q9UFE4 SPATA5-201ENST00000274008 8137 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
CCDC39Q9UFE4 DAB2-209ENST00000509337 2740 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
CCDC39Q9UFE4 SEMA6D-210ENST00000558816 4419 ntTSL 5 BASIC6.45□□□□□ -1.38
CCDC39Q9UFE4 ADAM5-202ENST00000399789 1942 ntBASIC6.45□□□□□ -1.38
CCDC39Q9UFE4 SCGB3A2-201ENST00000296694 515 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
CCDC39Q9UFE4 OR56A3-201ENST00000329564 948 ntAPPRIS P1 BASIC6.45□□□□□ -1.38
CCDC39Q9UFE4 Y_RNA.160-201ENST00000363677 92 ntBASIC6.45□□□□□ -1.38
CCDC39Q9UFE4 RNA5SP500-201ENST00000364486 119 ntBASIC6.45□□□□□ -1.38
CCDC39Q9UFE4 Y_RNA.529-201ENST00000384586 119 ntBASIC6.45□□□□□ -1.38
CCDC39Q9UFE4 IGLV3-10-201ENST00000390315 382 ntAPPRIS P1 BASIC6.45□□□□□ -1.38
CCDC39Q9UFE4 TRGV5-201ENST00000390344 552 ntAPPRIS P1 BASIC6.45□□□□□ -1.38
CCDC39Q9UFE4 TRAV8-7-201ENST00000390456 341 ntAPPRIS P1 BASIC6.45□□□□□ -1.38
CCDC39Q9UFE4 HIST1H3PS1-201ENST00000404612 417 ntBASIC6.45□□□□□ -1.38
CCDC39Q9UFE4 MIR1203-201ENST00000408812 85 ntBASIC6.45□□□□□ -1.38
CCDC39Q9UFE4 TPT1P2-201ENST00000413105 503 ntBASIC6.45□□□□□ -1.38
CCDC39Q9UFE4 LINC01198-201ENST00000416521 500 ntTSL 3 BASIC6.45□□□□□ -1.38
CCDC39Q9UFE4 TMEM196-203ENST00000422233 775 ntTSL 5 BASIC6.45□□□□□ -1.38
CCDC39Q9UFE4 AC023469.2-201ENST00000425983 657 ntTSL 5 BASIC6.45□□□□□ -1.38
CCDC39Q9UFE4 LINC01884-201ENST00000433429 440 ntTSL 3 BASIC6.45□□□□□ -1.38
CCDC39Q9UFE4 TMX2P1-201ENST00000436507 708 ntBASIC6.45□□□□□ -1.38
CCDC39Q9UFE4 AC092802.2-202ENST00000444665 371 ntTSL 5 BASIC6.45□□□□□ -1.38
CCDC39Q9UFE4 BUD31P2-201ENST00000449374 300 ntBASIC6.45□□□□□ -1.38
CCDC39Q9UFE4 RPL5P24-201ENST00000463742 885 ntBASIC6.45□□□□□ -1.38
CCDC39Q9UFE4 DUTP1-201ENST00000493631 470 ntBASIC6.45□□□□□ -1.38
CCDC39Q9UFE4 RPS17P5-201ENST00000498293 408 ntBASIC6.45□□□□□ -1.38
CCDC39Q9UFE4 SCGB3A2-202ENST00000504320 440 ntTSL 3 BASIC6.45□□□□□ -1.38
CCDC39Q9UFE4 WBP1LP4-201ENST00000505043 344 ntBASIC6.45□□□□□ -1.38
CCDC39Q9UFE4 LRRC34P2-201ENST00000514850 553 ntBASIC6.45□□□□□ -1.38
CCDC39Q9UFE4 SCARNA6.1-201ENST00000516989 238 ntBASIC6.45□□□□□ -1.38
CCDC39Q9UFE4 AC068672.3-201ENST00000524017 824 ntTSL 3 BASIC6.45□□□□□ -1.38
CCDC39Q9UFE4 AC108471.2-203ENST00000532680 517 ntTSL 5 BASIC6.45□□□□□ -1.38
CCDC39Q9UFE4 AC023796.1-201ENST00000536131 670 ntTSL 3 BASIC6.45□□□□□ -1.38
CCDC39Q9UFE4 AC107023.1-201ENST00000552757 356 ntTSL 5 BASIC6.45□□□□□ -1.38
CCDC39Q9UFE4 AC018558.1-201ENST00000562591 459 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
CCDC39Q9UFE4 AC012146.2-201ENST00000576545 416 ntBASIC6.45□□□□□ -1.38
CCDC39Q9UFE4 MIR5708-201ENST00000579723 85 ntBASIC6.45□□□□□ -1.38
CCDC39Q9UFE4 AC010928.3-201ENST00000587712 541 ntBASIC6.45□□□□□ -1.38
CCDC39Q9UFE4 AL592494.3-201ENST00000609485 464 ntBASIC6.45□□□□□ -1.38
CCDC39Q9UFE4 AC019193.2-201ENST00000610012 634 ntBASIC6.45□□□□□ -1.38
CCDC39Q9UFE4 AC090607.5-201ENST00000615692 224 ntBASIC6.45□□□□□ -1.38
CCDC39Q9UFE4 AL354810.1-201ENST00000618134 635 ntTSL 3 BASIC6.45□□□□□ -1.38
CCDC39Q9UFE4 AP003122.6-201ENST00000623831 495 ntBASIC6.45□□□□□ -1.38
CCDC39Q9UFE4 LRRC8B-201ENST00000330947 7593 ntAPPRIS P1 TSL 5 BASIC6.45□□□□□ -1.38
CCDC39Q9UFE4 ECM2-202ENST00000375540 1606 ntTSL 2 BASIC6.45□□□□□ -1.38
CCDC39Q9UFE4 USP15-201ENST00000280377 4748 ntAPPRIS ALT1 TSL 1 (best) BASIC6.45□□□□□ -1.38
CCDC39Q9UFE4 USP7-202ENST00000381886 3587 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
CCDC39Q9UFE4 DPP8-203ENST00000341861 8699 ntAPPRIS P4 TSL 2 BASIC6.45□□□□□ -1.38
CCDC39Q9UFE4 SLC9B1P1-201ENST00000331172 1337 ntBASIC6.45□□□□□ -1.38
CCDC39Q9UFE4 BNIP2-202ENST00000415213 1509 ntTSL 2 BASIC6.45□□□□□ -1.38
CCDC39Q9UFE4 RGS13-204ENST00000543215 1518 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
CCDC39Q9UFE4 ZNF788-203ENST00000430298 3941 ntTSL 2 BASIC6.44□□□□□ -1.38
CCDC39Q9UFE4 ZNF569-203ENST00000392150 1918 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
CCDC39Q9UFE4 YPEL5-202ENST00000379519 2499 ntAPPRIS P1 TSL 2 BASIC6.44□□□□□ -1.38
CCDC39Q9UFE4 LGI1-202ENST00000371418 2381 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
CCDC39Q9UFE4 SCN1A-201ENST00000303395 8533 ntAPPRIS ALT1 TSL 5 BASIC6.44□□□□□ -1.38
CCDC39Q9UFE4 SAGE1-203ENST00000537770 1824 ntAPPRIS ALT2 TSL 5 BASIC6.44□□□□□ -1.38
CCDC39Q9UFE4 OR9K1P-201ENST00000326513 941 ntBASIC6.44□□□□□ -1.38
CCDC39Q9UFE4 RPL39-201ENST00000361575 401 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
CCDC39Q9UFE4 UTS2-202ENST00000361696 559 ntAPPRIS ALT2 TSL 1 (best) BASIC6.44□□□□□ -1.38
CCDC39Q9UFE4 RNY4P14-201ENST00000363656 96 ntBASIC6.44□□□□□ -1.38
CCDC39Q9UFE4 SPRR2E-202ENST00000368751 692 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
CCDC39Q9UFE4 AL672167.2-201ENST00000377164 879 ntBASIC6.44□□□□□ -1.38
CCDC39Q9UFE4 MIR130A-201ENST00000385274 89 ntBASIC6.44□□□□□ -1.38
CCDC39Q9UFE4 TRDC-201ENST00000390477 720 ntAPPRIS P1 BASIC6.44□□□□□ -1.38
CCDC39Q9UFE4 CXADR-203ENST00000400165 603 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
CCDC39Q9UFE4 LINC00396-201ENST00000411690 439 ntTSL 3 BASIC6.44□□□□□ -1.38
CCDC39Q9UFE4 LINC00364-201ENST00000415120 611 ntTSL 3 BASIC6.44□□□□□ -1.38
CCDC39Q9UFE4 AC021035.1-201ENST00000421597 427 ntTSL 3 BASIC6.44□□□□□ -1.38
CCDC39Q9UFE4 UBE2E2-AS1-202ENST00000430018 499 ntTSL 2 BASIC6.44□□□□□ -1.38
CCDC39Q9UFE4 MTND4LP10-201ENST00000435146 291 ntBASIC6.44□□□□□ -1.38
CCDC39Q9UFE4 NDUFB4P8-201ENST00000435351 367 ntBASIC6.44□□□□□ -1.38
CCDC39Q9UFE4 GAPDHP48-201ENST00000436626 961 ntBASIC6.44□□□□□ -1.38
CCDC39Q9UFE4 AL590867.3-201ENST00000436953 438 ntTSL 3 BASIC6.44□□□□□ -1.38
CCDC39Q9UFE4 PA2G4P6-201ENST00000438325 1197 ntBASIC6.44□□□□□ -1.38
CCDC39Q9UFE4 AP000472.1-201ENST00000452500 530 ntTSL 2 BASIC6.44□□□□□ -1.38
CCDC39Q9UFE4 DDX39BP2-208ENST00000453923 258 ntBASIC6.44□□□□□ -1.38
CCDC39Q9UFE4 AP001439.1-201ENST00000455275 392 ntTSL 2 BASIC6.44□□□□□ -1.38
CCDC39Q9UFE4 ATP6V1G3-204ENST00000489986 449 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
CCDC39Q9UFE4 RPL37P23-201ENST00000492641 294 ntBASIC6.44□□□□□ -1.38
CCDC39Q9UFE4 AC114786.4-201ENST00000508771 728 ntBASIC6.44□□□□□ -1.38
CCDC39Q9UFE4 AC122710.1-201ENST00000510622 553 ntTSL 5 BASIC6.44□□□□□ -1.38
CCDC39Q9UFE4 LINC01060-205ENST00000512839 716 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
CCDC39Q9UFE4 snoZ278.1-201ENST00000517059 112 ntBASIC6.44□□□□□ -1.38
CCDC39Q9UFE4 AC021678.3-201ENST00000517893 476 ntBASIC6.44□□□□□ -1.38
CCDC39Q9UFE4 RAD21-204ENST00000518055 896 ntTSL 2 BASIC6.44□□□□□ -1.38
CCDC39Q9UFE4 AC025871.1-202ENST00000518819 432 ntTSL 3 BASIC6.44□□□□□ -1.38
CCDC39Q9UFE4 AC246817.2-206ENST00000520570 582 ntTSL 4 BASIC6.44□□□□□ -1.38
CCDC39Q9UFE4 AC011008.1-201ENST00000522026 439 ntTSL 3 BASIC6.44□□□□□ -1.38
CCDC39Q9UFE4 AC073023.1-201ENST00000522896 773 ntTSL 5 BASIC6.44□□□□□ -1.38
CCDC39Q9UFE4 AC099520.2-201ENST00000523745 567 ntTSL 3 BASIC6.44□□□□□ -1.38
CCDC39Q9UFE4 IGLV3-30-201ENST00000524362 298 ntBASIC6.44□□□□□ -1.38
CCDC39Q9UFE4 AL078612.2-201ENST00000525133 646 ntTSL 3 BASIC6.44□□□□□ -1.38
CCDC39Q9UFE4 TOMM20P1-201ENST00000534518 427 ntBASIC6.44□□□□□ -1.38
CCDC39Q9UFE4 CDKN3-206ENST00000541304 1070 ntTSL 2 BASIC6.44□□□□□ -1.38
CCDC39Q9UFE4 LINC02443-204ENST00000544717 754 ntTSL 5 BASIC6.44□□□□□ -1.38
CCDC39Q9UFE4 AC137627.1-201ENST00000545761 289 ntBASIC6.44□□□□□ -1.38
CCDC39Q9UFE4 FRMD6-AS2-201ENST00000556617 548 ntTSL 4 BASIC6.44□□□□□ -1.38
CCDC39Q9UFE4 MMP2-AS1-201ENST00000565307 593 ntTSL 4 BASIC6.44□□□□□ -1.38
CCDC39Q9UFE4 AC006504.2-201ENST00000589471 458 ntTSL 3 BASIC6.44□□□□□ -1.38
Retrieved 100 of 98,524 protein–RNA pairs in 123.3 ms