Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 AC078962.4-201ENST00000546135 254 ntTSL 3 BASIC5.61□□□□□ -1.51
TRIM39Q9HCM9 AC007686.2-201ENST00000554043 469 ntTSL 2 BASIC5.61□□□□□ -1.51
TRIM39Q9HCM9 AC022404.1-201ENST00000555320 273 ntBASIC5.61□□□□□ -1.51
TRIM39Q9HCM9 AL049872.1-201ENST00000556323 322 ntBASIC5.61□□□□□ -1.51
TRIM39Q9HCM9 AC245505.1-201ENST00000556398 224 ntBASIC5.61□□□□□ -1.51
TRIM39Q9HCM9 ZNF519P3-201ENST00000557158 1032 ntBASIC5.61□□□□□ -1.51
TRIM39Q9HCM9 AL353708.2-201ENST00000567486 447 ntTSL 3 BASIC5.61□□□□□ -1.51
TRIM39Q9HCM9 KYNUP3-201ENST00000574386 1341 ntBASIC5.61□□□□□ -1.51
TRIM39Q9HCM9 AC012146.2-201ENST00000576545 416 ntBASIC5.61□□□□□ -1.51
TRIM39Q9HCM9 MTATP6P3-201ENST00000581686 676 ntBASIC5.61□□□□□ -1.51
TRIM39Q9HCM9 CFAP221-215ENST00000598644 1532 ntTSL 2 BASIC5.61□□□□□ -1.51
TRIM39Q9HCM9 DTNA-231ENST00000598774 2418 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
TRIM39Q9HCM9 AC115286.1-201ENST00000604298 434 ntBASIC5.61□□□□□ -1.51
TRIM39Q9HCM9 AC005084.1-201ENST00000605160 304 ntBASIC5.61□□□□□ -1.51
TRIM39Q9HCM9 AC015712.7-201ENST00000615211 635 ntBASIC5.61□□□□□ -1.51
TRIM39Q9HCM9 HEMGN-202ENST00000616898 2305 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
TRIM39Q9HCM9 GTF2IRD2P1-202ENST00000618962 3055 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
TRIM39Q9HCM9 CU639417.4-201ENST00000623928 207 ntBASIC5.61□□□□□ -1.51
TRIM39Q9HCM9 OR4G11P-202ENST00000642116 1414 ntBASIC5.61□□□□□ -1.51
TRIM39Q9HCM9 AC011912.1-201ENST00000623483 5819 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
TRIM39Q9HCM9 SEC31A-204ENST00000355196 4104 ntAPPRIS P4 TSL 2 BASIC5.61□□□□□ -1.51
TRIM39Q9HCM9 RAD17-220ENST00000616683 3057 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
TRIM39Q9HCM9 PNLIPRP3-201ENST00000369230 2354 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
TRIM39Q9HCM9 PSD3-204ENST00000440756 11690 ntAPPRIS ALT2 TSL 5 BASIC5.6□□□□□ -1.51
TRIM39Q9HCM9 FAM111A-201ENST00000361723 3592 ntAPPRIS P1 TSL 2 BASIC5.6□□□□□ -1.51
TRIM39Q9HCM9 AL160286.3-201ENST00000569644 3294 ntTSL 2 BASIC5.6□□□□□ -1.51
TRIM39Q9HCM9 POSTN-204ENST00000379749 3210 ntTSL 5 BASIC5.6□□□□□ -1.51
TRIM39Q9HCM9 VSNL1-203ENST00000406397 2725 ntAPPRIS P1 TSL 5 BASIC5.6□□□□□ -1.51
TRIM39Q9HCM9 Y_RNA.3-201ENST00000362331 103 ntBASIC5.6□□□□□ -1.51
TRIM39Q9HCM9 RNU6-433P-201ENST00000363216 104 ntBASIC5.6□□□□□ -1.51
TRIM39Q9HCM9 HEATR1-201ENST00000366579 793 ntTSL 2 BASIC5.6□□□□□ -1.51
TRIM39Q9HCM9 EQTN-202ENST00000380032 1033 ntAPPRIS P3 TSL 1 (best) BASIC5.6□□□□□ -1.51
TRIM39Q9HCM9 CARD6-202ENST00000381677 1094 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
TRIM39Q9HCM9 RNU6-657P-201ENST00000383904 107 ntBASIC5.6□□□□□ -1.51
TRIM39Q9HCM9 AC087752.1-201ENST00000391360 558 ntBASIC5.6□□□□□ -1.51
TRIM39Q9HCM9 BPIFC-202ENST00000397450 458 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
TRIM39Q9HCM9 ZNF788-202ENST00000397759 777 ntAPPRIS P1 TSL 5 BASIC5.6□□□□□ -1.51
TRIM39Q9HCM9 DNAJA1P3-201ENST00000399417 1194 ntBASIC5.6□□□□□ -1.51
TRIM39Q9HCM9 DSTNP4-201ENST00000399472 474 ntBASIC5.6□□□□□ -1.51
TRIM39Q9HCM9 C1GALT1-202ENST00000402468 930 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
TRIM39Q9HCM9 AL078604.1-201ENST00000404609 466 ntBASIC5.6□□□□□ -1.51
TRIM39Q9HCM9 AL512422.1-201ENST00000407033 553 ntBASIC5.6□□□□□ -1.51
TRIM39Q9HCM9 PPP1R1C-203ENST00000409702 1157 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
TRIM39Q9HCM9 RN7SKP56-201ENST00000410513 331 ntBASIC5.6□□□□□ -1.51
TRIM39Q9HCM9 RNF10P1-201ENST00000418589 369 ntBASIC5.6□□□□□ -1.51
TRIM39Q9HCM9 Z98742.1-201ENST00000419801 632 ntTSL 3 BASIC5.6□□□□□ -1.51
TRIM39Q9HCM9 SLC44A3-AS1-205ENST00000424505 612 ntBASIC5.6□□□□□ -1.51
TRIM39Q9HCM9 DPYD-IT1-201ENST00000424982 401 ntTSL 3 BASIC5.6□□□□□ -1.51
TRIM39Q9HCM9 AL360227.1-201ENST00000425364 433 ntTSL 3 BASIC5.6□□□□□ -1.51
TRIM39Q9HCM9 AL360007.1-201ENST00000426166 349 ntTSL 3 BASIC5.6□□□□□ -1.51
TRIM39Q9HCM9 AL451042.1-201ENST00000426353 544 ntTSL 3 BASIC5.6□□□□□ -1.51
TRIM39Q9HCM9 AL596220.1-202ENST00000429768 314 ntTSL 3 BASIC5.6□□□□□ -1.51
TRIM39Q9HCM9 ZYG11AP1-201ENST00000430329 837 ntBASIC5.6□□□□□ -1.51
TRIM39Q9HCM9 OR2B8P-201ENST00000432841 938 ntBASIC5.6□□□□□ -1.51
TRIM39Q9HCM9 AL353751.1-203ENST00000437032 603 ntTSL 3 BASIC5.6□□□□□ -1.51
TRIM39Q9HCM9 AL121957.1-202ENST00000437040 329 ntTSL 3 BASIC5.6□□□□□ -1.51
TRIM39Q9HCM9 AL357520.1-201ENST00000441557 453 ntBASIC5.6□□□□□ -1.51
TRIM39Q9HCM9 AP000281.1-201ENST00000444036 316 ntBASIC5.6□□□□□ -1.51
TRIM39Q9HCM9 EEF1B2P6-201ENST00000445713 673 ntBASIC5.6□□□□□ -1.51
TRIM39Q9HCM9 DARS-AS1-206ENST00000446492 488 ntTSL 3 BASIC5.6□□□□□ -1.51
TRIM39Q9HCM9 AP001604.1-201ENST00000447384 954 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
TRIM39Q9HCM9 RPL39P6-201ENST00000448289 150 ntBASIC5.6□□□□□ -1.51
TRIM39Q9HCM9 SRGAP3-AS4-201ENST00000449023 377 ntTSL 2 BASIC5.6□□□□□ -1.51
TRIM39Q9HCM9 LINC01201-202ENST00000451431 401 ntTSL 3 BASIC5.6□□□□□ -1.51
TRIM39Q9HCM9 TRGVB-201ENST00000453257 471 ntBASIC5.6□□□□□ -1.51
TRIM39Q9HCM9 RPL12P39-201ENST00000455456 496 ntBASIC5.6□□□□□ -1.51
TRIM39Q9HCM9 LRRC77P-202ENST00000463642 457 ntTSL 4 BASIC5.6□□□□□ -1.51
TRIM39Q9HCM9 AC073359.1-201ENST00000486545 521 ntTSL 2 BASIC5.6□□□□□ -1.51
TRIM39Q9HCM9 BNIP3P41-201ENST00000503774 571 ntBASIC5.6□□□□□ -1.51
TRIM39Q9HCM9 LINC01957-201ENST00000506392 751 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
TRIM39Q9HCM9 ST13P12-201ENST00000508958 1094 ntBASIC5.6□□□□□ -1.51
TRIM39Q9HCM9 SSX6-203ENST00000509958 336 ntTSL 3 BASIC5.6□□□□□ -1.51
TRIM39Q9HCM9 AC093766.1-202ENST00000513400 718 ntTSL 3 BASIC5.6□□□□□ -1.51
TRIM39Q9HCM9 AC011389.1-203ENST00000513790 573 ntTSL 4 BASIC5.6□□□□□ -1.51
TRIM39Q9HCM9 AC064802.1-201ENST00000521523 866 ntTSL 2 BASIC5.6□□□□□ -1.51
TRIM39Q9HCM9 AC136777.2-201ENST00000522979 358 ntBASIC5.6□□□□□ -1.51
TRIM39Q9HCM9 AP003392.2-201ENST00000527269 208 ntBASIC5.6□□□□□ -1.51
TRIM39Q9HCM9 MS4A13-204ENST00000527948 790 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
TRIM39Q9HCM9 LINC00944-202ENST00000540684 888 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
TRIM39Q9HCM9 MRPL42-204ENST00000548545 692 ntAPPRIS ALT1 TSL 2 BASIC5.6□□□□□ -1.51
TRIM39Q9HCM9 AC074031.1-201ENST00000550634 734 ntTSL 3 BASIC5.6□□□□□ -1.51
TRIM39Q9HCM9 EIF5A2P1-201ENST00000564027 460 ntBASIC5.6□□□□□ -1.51
TRIM39Q9HCM9 TMEM87A-212ENST00000568432 750 ntTSL 3 BASIC5.6□□□□□ -1.51
TRIM39Q9HCM9 CASC22-201ENST00000569713 386 ntTSL 5 BASIC5.6□□□□□ -1.51
TRIM39Q9HCM9 AC091691.2-201ENST00000581940 567 ntTSL 4 BASIC5.6□□□□□ -1.51
TRIM39Q9HCM9 AC006504.5-202ENST00000586784 656 ntTSL 2 BASIC5.6□□□□□ -1.51
TRIM39Q9HCM9 NF1P5-201ENST00000588287 448 ntBASIC5.6□□□□□ -1.51
TRIM39Q9HCM9 AP001120.2-201ENST00000589395 296 ntTSL 3 BASIC5.6□□□□□ -1.51
TRIM39Q9HCM9 MIR7515HG-243ENST00000591400 1067 ntTSL 5 BASIC5.6□□□□□ -1.51
TRIM39Q9HCM9 AP2S1-210ENST00000601649 315 ntTSL 3 BASIC5.6□□□□□ -1.51
TRIM39Q9HCM9 AC012065.4-201ENST00000602445 679 ntBASIC5.6□□□□□ -1.51
TRIM39Q9HCM9 FO393422.1-201ENST00000603908 708 ntBASIC5.6□□□□□ -1.51
TRIM39Q9HCM9 NDUFA8P1-201ENST00000605525 367 ntBASIC5.6□□□□□ -1.51
TRIM39Q9HCM9 AC007563.2-202ENST00000607591 394 ntTSL 3 BASIC5.6□□□□□ -1.51
TRIM39Q9HCM9 DLEU1_2.1-201ENST00000617920 342 ntBASIC5.6□□□□□ -1.51
TRIM39Q9HCM9 ZFAT-AS1_1.1-201ENST00000620907 79 ntBASIC5.6□□□□□ -1.51
TRIM39Q9HCM9 SNHG5-214ENST00000623001 598 ntTSL 2 BASIC5.6□□□□□ -1.51
TRIM39Q9HCM9 AL691477.1-201ENST00000624398 162 ntBASIC5.6□□□□□ -1.51
TRIM39Q9HCM9 KCNJ1-206ENST00000440599 2539 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
TRIM39Q9HCM9 PIGK-202ENST00000370812 4596 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 148.7 ms