Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 TXNDC8-204ENST00000423740 356 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
HOXD3P31249 AC073069.1-201ENST00000428657 441 ntBASIC4.19□□□□□ -1.74
HOXD3P31249 TXNDC12-AS1-201ENST00000428794 391 ntTSL 3 BASIC4.19□□□□□ -1.74
HOXD3P31249 RPL31P54-201ENST00000429803 370 ntBASIC4.19□□□□□ -1.74
HOXD3P31249 RPL12P17-201ENST00000432393 498 ntBASIC4.19□□□□□ -1.74
HOXD3P31249 TEX41-206ENST00000432608 661 ntTSL 3 BASIC4.19□□□□□ -1.74
HOXD3P31249 GSTM5P1-201ENST00000434751 660 ntBASIC4.19□□□□□ -1.74
HOXD3P31249 MTCYBP39-201ENST00000437562 491 ntBASIC4.19□□□□□ -1.74
HOXD3P31249 AC015983.2-201ENST00000446053 472 ntTSL 3 BASIC4.19□□□□□ -1.74
HOXD3P31249 MIR217HG-201ENST00000446139 900 ntTSL 5 BASIC4.19□□□□□ -1.74
HOXD3P31249 EIF4EBP2P1-201ENST00000450009 343 ntBASIC4.19□□□□□ -1.74
HOXD3P31249 AL672138.1-201ENST00000450604 1015 ntBASIC4.19□□□□□ -1.74
HOXD3P31249 DNM3-IT1-201ENST00000450800 396 ntTSL 3 BASIC4.19□□□□□ -1.74
HOXD3P31249 AC019117.1-204ENST00000451792 442 ntTSL 3 BASIC4.19□□□□□ -1.74
HOXD3P31249 AL512328.1-202ENST00000452640 850 ntTSL 3 BASIC4.19□□□□□ -1.74
HOXD3P31249 ZNF114P1-201ENST00000453500 292 ntBASIC4.19□□□□□ -1.74
HOXD3P31249 AZGP1P2-201ENST00000454506 345 ntBASIC4.19□□□□□ -1.74
HOXD3P31249 NDUFA12P1-201ENST00000455914 406 ntBASIC4.19□□□□□ -1.74
HOXD3P31249 LINC00377-201ENST00000456588 657 ntTSL 5 BASIC4.19□□□□□ -1.74
HOXD3P31249 TRAPPC2-204ENST00000458511 678 ntTSL 5 BASIC4.19□□□□□ -1.74
HOXD3P31249 VN1R5-201ENST00000472952 1239 ntAPPRIS P1 BASIC4.19□□□□□ -1.74
HOXD3P31249 AC080013.1-206ENST00000496842 712 ntTSL 2 BASIC4.19□□□□□ -1.74
HOXD3P31249 AC104685.1-201ENST00000502445 371 ntBASIC4.19□□□□□ -1.74
HOXD3P31249 THAP6-205ENST00000504190 1004 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
HOXD3P31249 AC016933.1-201ENST00000504735 539 ntTSL 2 BASIC4.19□□□□□ -1.74
HOXD3P31249 LINC01339-201ENST00000505712 440 ntTSL 2 BASIC4.19□□□□□ -1.74
HOXD3P31249 MYLK-AS2-201ENST00000510827 500 ntTSL 3 BASIC4.19□□□□□ -1.74
HOXD3P31249 RPL7L1P13-201ENST00000511702 739 ntBASIC4.19□□□□□ -1.74
HOXD3P31249 AC108043.1-201ENST00000512696 574 ntBASIC4.19□□□□□ -1.74
HOXD3P31249 AC098829.1-202ENST00000513384 537 ntTSL 3 BASIC4.19□□□□□ -1.74
HOXD3P31249 TCP11X3P-202ENST00000514289 1254 ntBASIC4.19□□□□□ -1.74
HOXD3P31249 RNU2-30P-201ENST00000516209 141 ntBASIC4.19□□□□□ -1.74
HOXD3P31249 RNA5SP135-201ENST00000517019 125 ntBASIC4.19□□□□□ -1.74
HOXD3P31249 AC022784.3-202ENST00000517816 826 ntTSL 3 BASIC4.19□□□□□ -1.74
HOXD3P31249 AP003472.1-201ENST00000519844 644 ntTSL 3 BASIC4.19□□□□□ -1.74
HOXD3P31249 AC106038.2-201ENST00000520706 568 ntBASIC4.19□□□□□ -1.74
HOXD3P31249 OR5AK1P-201ENST00000524837 922 ntBASIC4.19□□□□□ -1.74
HOXD3P31249 CTAGE1-202ENST00000525417 1267 ntAPPRIS ALT2 BASIC4.19□□□□□ -1.74
HOXD3P31249 OR8Q1P-201ENST00000526467 655 ntBASIC4.19□□□□□ -1.74
HOXD3P31249 AL390334.1-201ENST00000556395 450 ntBASIC4.19□□□□□ -1.74
HOXD3P31249 LINC01146-208ENST00000557355 548 ntTSL 4 BASIC4.19□□□□□ -1.74
HOXD3P31249 POU1F1-203ENST00000560656 647 ntTSL 5 BASIC4.19□□□□□ -1.74
HOXD3P31249 NR2F2-AS1-211ENST00000561402 589 ntTSL 3 BASIC4.19□□□□□ -1.74
HOXD3P31249 LINC01904-201ENST00000564872 861 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
HOXD3P31249 AC007599.1-201ENST00000568688 1174 ntBASIC4.19□□□□□ -1.74
HOXD3P31249 AC138915.2-201ENST00000569776 97 ntBASIC4.19□□□□□ -1.74
HOXD3P31249 AC090617.5-201ENST00000571815 528 ntTSL 3 BASIC4.19□□□□□ -1.74
HOXD3P31249 AC002091.1-201ENST00000578788 557 ntTSL 2 BASIC4.19□□□□□ -1.74
HOXD3P31249 MIR7515HG-254ENST00000593269 943 ntTSL 5 BASIC4.19□□□□□ -1.74
HOXD3P31249 AL390838.2-201ENST00000602394 274 ntBASIC4.19□□□□□ -1.74
HOXD3P31249 AC078795.2-201ENST00000602835 1252 ntBASIC4.19□□□□□ -1.74
HOXD3P31249 AC112220.3-201ENST00000605502 502 ntBASIC4.19□□□□□ -1.74
HOXD3P31249 AL031775.1-201ENST00000607014 887 ntBASIC4.19□□□□□ -1.74
HOXD3P31249 AC239868.4-201ENST00000608318 671 ntBASIC4.19□□□□□ -1.74
HOXD3P31249 AC015712.7-201ENST00000615211 635 ntBASIC4.19□□□□□ -1.74
HOXD3P31249 MMP13-203ENST00000615555 1152 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
HOXD3P31249 AC068870.2-201ENST00000620635 389 ntBASIC4.19□□□□□ -1.74
HOXD3P31249 AC009878.1-201ENST00000621819 340 ntBASIC4.19□□□□□ -1.74
HOXD3P31249 AC000095.2-202ENST00000637415 154 ntBASIC4.19□□□□□ -1.74
HOXD3P31249 KCNRG-202ENST00000360473 1623 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
HOXD3P31249 ACSL5-202ENST00000354655 3351 ntAPPRIS P1 TSL 2 BASIC4.19□□□□□ -1.74
HOXD3P31249 ACSL5-204ENST00000393081 3380 ntAPPRIS P1 TSL 5 BASIC4.19□□□□□ -1.74
HOXD3P31249 RAPH1-207ENST00000423104 1860 ntAPPRIS ALT2 TSL 5 BASIC4.19□□□□□ -1.74
HOXD3P31249 PRG4-202ENST00000367483 4921 ntTSL 5 BASIC4.19□□□□□ -1.74
HOXD3P31249 C1orf27-201ENST00000287859 3792 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
HOXD3P31249 MAP3K2-201ENST00000344908 2135 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
HOXD3P31249 KDM4C-214ENST00000536108 3406 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
HOXD3P31249 AC018557.1-201ENST00000569274 1790 ntTSL 5 BASIC4.19□□□□□ -1.74
HOXD3P31249 AKAP6-212ENST00000557272 4601 ntTSL 5 BASIC4.19□□□□□ -1.74
HOXD3P31249 ATRX-201ENST00000373344 11220 ntAPPRIS P4 TSL 1 (best) BASIC4.19□□□□□ -1.74
HOXD3P31249 PRUNE2-207ENST00000428286 12437 ntTSL 5 BASIC4.19□□□□□ -1.74
HOXD3P31249 EPHA4-202ENST00000409854 3454 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
HOXD3P31249 IFIT2-203ENST00000638108 3703 ntAPPRIS P2 TSL 5 BASIC4.19□□□□□ -1.74
HOXD3P31249 CDC42BPA-204ENST00000366767 9320 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
HOXD3P31249 CSMD3-201ENST00000297405 13212 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
HOXD3P31249 SLCO1C1-209ENST00000545604 2557 ntTSL 2 BASIC4.18□□□□□ -1.74
HOXD3P31249 OFD1P9Y-201ENST00000417699 1491 ntBASIC4.18□□□□□ -1.74
HOXD3P31249 DIAPH3-208ENST00000498416 2249 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
HOXD3P31249 ABCB5-202ENST00000404938 5811 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
HOXD3P31249 IKZF2-201ENST00000342002 3747 ntAPPRIS ALT2 TSL 1 (best) BASIC4.18□□□□□ -1.74
HOXD3P31249 GPALPP1-201ENST00000357537 5368 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
HOXD3P31249 ZNF248-201ENST00000357328 4795 ntAPPRIS P1 TSL 2 BASIC4.18□□□□□ -1.74
HOXD3P31249 NLRP3P1-201ENST00000622303 1785 ntBASIC4.18□□□□□ -1.74
HOXD3P31249 AC112198.2-201ENST00000426589 6996 ntBASIC4.18□□□□□ -1.74
HOXD3P31249 RAB3GAP1-207ENST00000539493 3161 ntTSL 5 BASIC4.18□□□□□ -1.74
HOXD3P31249 SLC38A11-204ENST00000409662 1542 ntAPPRIS P2 TSL 1 (best) BASIC4.18□□□□□ -1.74
HOXD3P31249 AL353743.4-201ENST00000422653 1547 ntBASIC4.18□□□□□ -1.74
HOXD3P31249 RNU4-21P-201ENST00000362802 126 ntBASIC4.18□□□□□ -1.74
HOXD3P31249 SNORA68.2-201ENST00000391263 128 ntBASIC4.18□□□□□ -1.74
HOXD3P31249 SPRR2A-201ENST00000392653 709 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
HOXD3P31249 RN7SKP142-201ENST00000411236 328 ntBASIC4.18□□□□□ -1.74
HOXD3P31249 AL450992.3-201ENST00000413192 568 ntBASIC4.18□□□□□ -1.74
HOXD3P31249 AL136133.1-201ENST00000413694 376 ntBASIC4.18□□□□□ -1.74
HOXD3P31249 MTCO2P34-201ENST00000421994 607 ntBASIC4.18□□□□□ -1.74
HOXD3P31249 SRSF1P1-201ENST00000424058 520 ntBASIC4.18□□□□□ -1.74
HOXD3P31249 RPS3AP44-201ENST00000425466 790 ntBASIC4.18□□□□□ -1.74
HOXD3P31249 LINC01799-202ENST00000426260 625 ntTSL 3 BASIC4.18□□□□□ -1.74
HOXD3P31249 LINC01889-201ENST00000430692 668 ntTSL 5 BASIC4.18□□□□□ -1.74
HOXD3P31249 AC017048.2-201ENST00000431455 822 ntTSL 3 BASIC4.18□□□□□ -1.74
HOXD3P31249 LINC01884-201ENST00000433429 440 ntTSL 3 BASIC4.18□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 105.9 ms