Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 SNORD17-201ENST00000390930 237 ntBASIC4.45□□□□□ -1.7
COL4A5P29400 SNORA48.5-201ENST00000391143 135 ntBASIC4.45□□□□□ -1.7
COL4A5P29400 MS4A4E-201ENST00000398984 479 ntTSL 5 BASIC4.45□□□□□ -1.7
COL4A5P29400 AC017079.2-201ENST00000416102 485 ntBASIC4.45□□□□□ -1.7
COL4A5P29400 PSMC1P13-201ENST00000458195 985 ntBASIC4.45□□□□□ -1.7
COL4A5P29400 AC018752.1-201ENST00000507813 206 ntTSL 5 BASIC4.45□□□□□ -1.7
COL4A5P29400 PHBP14-201ENST00000512887 367 ntBASIC4.45□□□□□ -1.7
COL4A5P29400 AC084768.1-201ENST00000518926 923 ntTSL 3 BASIC4.45□□□□□ -1.7
COL4A5P29400 AC008802.1-201ENST00000519121 791 ntBASIC4.45□□□□□ -1.7
COL4A5P29400 IGKV2OR2-8-201ENST00000558710 300 ntBASIC4.45□□□□□ -1.7
COL4A5P29400 OCLM-201ENST00000574641 884 ntAPPRIS P1 BASIC4.45□□□□□ -1.7
COL4A5P29400 GPR171-201ENST00000309180 1786 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
COL4A5P29400 KIF23-206ENST00000558585 2296 ntTSL 2 BASIC4.45□□□□□ -1.7
COL4A5P29400 EMSY-215ENST00000533248 3798 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
COL4A5P29400 MYSM1-203ENST00000472487 7785 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
COL4A5P29400 MS4A1-201ENST00000345732 3331 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
COL4A5P29400 AC093535.2-201ENST00000624769 2326 ntBASIC4.44□□□□□ -1.7
COL4A5P29400 CAPS2-206ENST00000409799 1859 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
COL4A5P29400 SCN1A-218ENST00000640036 8131 ntAPPRIS ALT1 TSL 5 BASIC4.44□□□□□ -1.7
COL4A5P29400 RIMS1-212ENST00000517827 3065 ntTSL 2 BASIC4.44□□□□□ -1.7
COL4A5P29400 NBPF10-202ENST00000617010 11630 ntTSL 5 BASIC4.44□□□□□ -1.7
COL4A5P29400 AL442128.2-201ENST00000620246 1824 ntBASIC4.44□□□□□ -1.7
COL4A5P29400 PTP4A1-205ENST00000626021 2203 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
COL4A5P29400 MGAT4A-204ENST00000414521 3709 ntTSL 2 BASIC4.44□□□□□ -1.7
COL4A5P29400 OR2AT4-205ENST00000641931 8357 ntAPPRIS P1 BASIC4.44□□□□□ -1.7
COL4A5P29400 NAMPTP1-201ENST00000440465 2514 ntBASIC4.44□□□□□ -1.7
COL4A5P29400 KLRC1-201ENST00000347831 1332 ntAPPRIS ALT2 TSL 1 (best) BASIC4.44□□□□□ -1.7
COL4A5P29400 AC072062.1-210ENST00000628464 1315 ntTSL 5 BASIC4.44□□□□□ -1.7
COL4A5P29400 RNA5SP374-201ENST00000362939 125 ntBASIC4.44□□□□□ -1.7
COL4A5P29400 AKAP14-204ENST00000371431 977 ntAPPRIS P3 TSL 1 (best) BASIC4.44□□□□□ -1.7
COL4A5P29400 OR5V1-215ENST00000377154 1266 ntAPPRIS P1 BASIC4.44□□□□□ -1.7
COL4A5P29400 AC236972.1-201ENST00000433225 199 ntBASIC4.44□□□□□ -1.7
COL4A5P29400 LINC01773-201ENST00000437598 787 ntTSL 2 BASIC4.44□□□□□ -1.7
COL4A5P29400 Z75741.1-201ENST00000446793 314 ntBASIC4.44□□□□□ -1.7
COL4A5P29400 AL121718.1-201ENST00000449463 387 ntTSL 3 BASIC4.44□□□□□ -1.7
COL4A5P29400 LINC01158-205ENST00000458253 747 ntTSL 5 BASIC4.44□□□□□ -1.7
COL4A5P29400 C1GALT1C1L-201ENST00000475092 1172 ntAPPRIS P1 BASIC4.44□□□□□ -1.7
COL4A5P29400 AC068672.1-201ENST00000520391 328 ntTSL 3 BASIC4.44□□□□□ -1.7
COL4A5P29400 AC083923.2-203ENST00000520512 372 ntTSL 3 BASIC4.44□□□□□ -1.7
COL4A5P29400 AC024224.2-201ENST00000544225 782 ntTSL 3 BASIC4.44□□□□□ -1.7
COL4A5P29400 MIR5186-201ENST00000577504 120 ntBASIC4.44□□□□□ -1.7
COL4A5P29400 AC021517.1-203ENST00000590257 421 ntTSL 3 BASIC4.44□□□□□ -1.7
COL4A5P29400 AL512625.3-207ENST00000609749 477 ntTSL 3 BASIC4.44□□□□□ -1.7
COL4A5P29400 AL354976.1-201ENST00000613843 387 ntBASIC4.44□□□□□ -1.7
COL4A5P29400 AL591424.2-201ENST00000617023 128 ntBASIC4.44□□□□□ -1.7
COL4A5P29400 ITGA9-AS1-218ENST00000630762 751 ntTSL 5 BASIC4.44□□□□□ -1.7
COL4A5P29400 ATP2C1-202ENST00000359644 3401 ntAPPRIS P3 TSL 1 (best) BASIC4.44□□□□□ -1.7
COL4A5P29400 LINC01187-201ENST00000506431 2314 ntTSL 5 BASIC4.44□□□□□ -1.7
COL4A5P29400 GPRC6A-203ENST00000530250 2310 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
COL4A5P29400 ALS2CR12-202ENST00000392257 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC4.44□□□□□ -1.7
COL4A5P29400 C4orf33-202ENST00000425929 1588 ntAPPRIS P1 TSL 2 BASIC4.44□□□□□ -1.7
COL4A5P29400 AL606516.1-201ENST00000455438 1861 ntTSL 2 BASIC4.44□□□□□ -1.7
COL4A5P29400 ABCA6-206ENST00000590645 1511 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
COL4A5P29400 FANCI-202ENST00000310775 4743 ntAPPRIS ALT2 TSL 1 (best) BASIC4.43□□□□□ -1.7
COL4A5P29400 DMXL2-202ENST00000449909 7465 ntAPPRIS ALT2 TSL 1 (best) BASIC4.43□□□□□ -1.7
COL4A5P29400 AC110760.2-201ENST00000508031 2546 ntTSL 2 BASIC4.43□□□□□ -1.7
COL4A5P29400 BIRC3-201ENST00000263464 5197 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
COL4A5P29400 MAPK10-303ENST00000641324 3959 ntBASIC4.43□□□□□ -1.7
COL4A5P29400 RNASE6-201ENST00000304677 1061 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
COL4A5P29400 DPPA3-201ENST00000345088 1079 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
COL4A5P29400 VDAC2P1-201ENST00000399358 958 ntBASIC4.43□□□□□ -1.7
COL4A5P29400 AC096644.3-201ENST00000416788 338 ntBASIC4.43□□□□□ -1.7
COL4A5P29400 MTCO1P45-201ENST00000431457 267 ntBASIC4.43□□□□□ -1.7
COL4A5P29400 LINC02496-201ENST00000509559 584 ntTSL 3 BASIC4.43□□□□□ -1.7
COL4A5P29400 AC021713.1-201ENST00000526554 510 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
COL4A5P29400 LINC01965-204ENST00000545549 575 ntTSL 4 BASIC4.43□□□□□ -1.7
COL4A5P29400 EIF4BP1-201ENST00000554881 351 ntBASIC4.43□□□□□ -1.7
COL4A5P29400 RMDN2-AS1-204ENST00000626669 448 ntTSL 5 BASIC4.43□□□□□ -1.7
COL4A5P29400 BCLAF1-207ENST00000527759 4373 ntAPPRIS ALT2 TSL 1 (best) BASIC4.43□□□□□ -1.7
COL4A5P29400 MBNL3-204ENST00000370853 2661 ntAPPRIS P4 TSL 1 (best) BASIC4.43□□□□□ -1.7
COL4A5P29400 STAG2-205ENST00000371160 6045 ntAPPRIS P3 TSL 1 (best) BASIC4.43□□□□□ -1.7
COL4A5P29400 RFX7-201ENST00000559447 10426 ntAPPRIS P5 TSL 5 BASIC4.43□□□□□ -1.7
COL4A5P29400 ZCCHC7-202ENST00000336755 2619 ntAPPRIS P1 TSL 2 BASIC4.43□□□□□ -1.7
COL4A5P29400 FBXL13-208ENST00000456695 1605 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
COL4A5P29400 TRIM36-201ENST00000282369 4050 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
COL4A5P29400 CEP192-201ENST00000325971 7764 ntTSL 5 BASIC4.43□□□□□ -1.7
COL4A5P29400 RAP1B-201ENST00000250559 13438 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
COL4A5P29400 ZBED6-201ENST00000545588 7979 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
COL4A5P29400 PRLR-220ENST00000620785 11063 ntTSL 5 BASIC4.42□□□□□ -1.7
COL4A5P29400 ALCAM-207ENST00000486979 1818 ntTSL 5 BASIC4.42□□□□□ -1.7
COL4A5P29400 MPDZ-204ENST00000381022 7589 ntAPPRIS ALT2 TSL 5 BASIC4.42□□□□□ -1.7
COL4A5P29400 SCN3A-202ENST00000360093 9123 ntAPPRIS ALT1 TSL 5 BASIC4.42□□□□□ -1.7
COL4A5P29400 UNC80-203ENST00000439458 13562 ntAPPRIS P1 TSL 5 BASIC4.42□□□□□ -1.7
COL4A5P29400 VN1R25P-201ENST00000443385 738 ntBASIC4.42□□□□□ -1.7
COL4A5P29400 VN1R40P-201ENST00000455196 941 ntBASIC4.42□□□□□ -1.7
COL4A5P29400 RPL37P3-201ENST00000456825 293 ntBASIC4.42□□□□□ -1.7
COL4A5P29400 AC093663.1-201ENST00000497190 394 ntBASIC4.42□□□□□ -1.7
COL4A5P29400 LINC02113-201ENST00000510302 336 ntTSL 3 BASIC4.42□□□□□ -1.7
COL4A5P29400 AC090877.1-201ENST00000561418 344 ntBASIC4.42□□□□□ -1.7
COL4A5P29400 PPP3CB-AS1-206ENST00000595935 675 ntTSL 5 BASIC4.42□□□□□ -1.7
COL4A5P29400 LINC01232-201ENST00000625254 836 ntTSL 5 BASIC4.42□□□□□ -1.7
COL4A5P29400 ATL2-217ENST00000629272 1242 ntTSL 5 BASIC4.42□□□□□ -1.7
COL4A5P29400 UNC5C-205ENST00000610318 9403 ntTSL 5 BASIC4.42□□□□□ -1.7
COL4A5P29400 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
COL4A5P29400 GRID2-208ENST00000611049 4844 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
COL4A5P29400 ZNF780A-205ENST00000594395 2044 ntAPPRIS ALT2 TSL 2 BASIC4.42□□□□□ -1.7
COL4A5P29400 OTC-201ENST00000039007 1585 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
COL4A5P29400 SDR42E1-201ENST00000328945 11566 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
COL4A5P29400 ZNF562-201ENST00000293648 12380 ntTSL 2 BASIC4.42□□□□□ -1.7
COL4A5P29400 RXFP1-204ENST00000423548 3930 ntTSL 2 BASIC4.42□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 74.6 ms