Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 BTAF1-204ENST00000544642 6938 ntAPPRIS ALT1 TSL 5 BASIC4.47□□□□□ -1.69
MSH3P20585 MAP3K19-203ENST00000375845 4369 ntAPPRIS P3 TSL 1 (best) BASIC4.47□□□□□ -1.69
MSH3P20585 SAMSN1-201ENST00000285670 2185 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
MSH3P20585 QSER1-201ENST00000399302 9335 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
MSH3P20585 PLS3-209ENST00000539310 3037 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
MSH3P20585 MS4A1-201ENST00000345732 3331 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
MSH3P20585 IQGAP2-204ENST00000502745 3404 ntTSL 2 BASIC4.47□□□□□ -1.69
MSH3P20585 IMPG2-201ENST00000193391 8337 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
MSH3P20585 AC004057.1-202ENST00000356247 284 ntTSL 3 BASIC4.47□□□□□ -1.69
MSH3P20585 XAGE1A-202ENST00000375600 474 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
MSH3P20585 XAGE1B-202ENST00000375613 474 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
MSH3P20585 RNU4-31P-201ENST00000384211 141 ntBASIC4.47□□□□□ -1.69
MSH3P20585 RNU6-178P-201ENST00000384631 104 ntBASIC4.47□□□□□ -1.69
MSH3P20585 TRAV12-2-201ENST00000390437 445 ntAPPRIS P1 BASIC4.47□□□□□ -1.69
MSH3P20585 RNA5SP332-201ENST00000391063 115 ntBASIC4.47□□□□□ -1.69
MSH3P20585 ATP5F1P2-201ENST00000398143 760 ntBASIC4.47□□□□□ -1.69
MSH3P20585 METTL5-205ENST00000409837 936 ntAPPRIS ALT1 TSL 1 (best) BASIC4.47□□□□□ -1.69
MSH3P20585 RN7SKP222-201ENST00000410651 315 ntBASIC4.47□□□□□ -1.69
MSH3P20585 BTBD9-AS1-201ENST00000412822 560 ntTSL 2 BASIC4.47□□□□□ -1.69
MSH3P20585 RPL26P29-201ENST00000415623 438 ntBASIC4.47□□□□□ -1.69
MSH3P20585 AC079790.1-201ENST00000420365 507 ntTSL 3 BASIC4.47□□□□□ -1.69
MSH3P20585 RAD23BP1-201ENST00000421404 1227 ntBASIC4.47□□□□□ -1.69
MSH3P20585 DPYD-AS1-201ENST00000422980 533 ntTSL 3 BASIC4.47□□□□□ -1.69
MSH3P20585 AC245028.1-201ENST00000423259 256 ntBASIC4.47□□□□□ -1.69
MSH3P20585 CENPIP1-201ENST00000425713 902 ntBASIC4.47□□□□□ -1.69
MSH3P20585 AL161618.1-201ENST00000438738 761 ntTSL 5 BASIC4.47□□□□□ -1.69
MSH3P20585 AC011753.3-201ENST00000443436 406 ntBASIC4.47□□□□□ -1.69
MSH3P20585 AC073284.1-201ENST00000448086 404 ntTSL 3 BASIC4.47□□□□□ -1.69
MSH3P20585 AL009048.1-201ENST00000450437 298 ntBASIC4.47□□□□□ -1.69
MSH3P20585 AC243772.1-201ENST00000451620 410 ntBASIC4.47□□□□□ -1.69
MSH3P20585 AC012671.1-201ENST00000451912 203 ntBASIC4.47□□□□□ -1.69
MSH3P20585 FO393415.3-201ENST00000456424 375 ntTSL 3 BASIC4.47□□□□□ -1.69
MSH3P20585 MTND2P28-201ENST00000457540 1044 ntBASIC4.47□□□□□ -1.69
MSH3P20585 OTOGL-202ENST00000458043 8083 ntAPPRIS P5 TSL 5 BASIC4.47□□□□□ -1.69
MSH3P20585 CASP12-210ENST00000494737 961 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
MSH3P20585 STK26-205ENST00000496850 1186 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
MSH3P20585 CRISP1-203ENST00000505118 1296 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
MSH3P20585 AC083795.2-201ENST00000510034 610 ntTSL 3 BASIC4.47□□□□□ -1.69
MSH3P20585 AC093331.2-201ENST00000520459 677 ntTSL 3 BASIC4.47□□□□□ -1.69
MSH3P20585 AC034205.1-201ENST00000520621 638 ntBASIC4.47□□□□□ -1.69
MSH3P20585 AC005740.3-201ENST00000520882 344 ntTSL 2 BASIC4.47□□□□□ -1.69
MSH3P20585 NPM1P6-201ENST00000521088 871 ntBASIC4.47□□□□□ -1.69
MSH3P20585 AC087783.1-201ENST00000527135 564 ntTSL 4 BASIC4.47□□□□□ -1.69
MSH3P20585 LINC02394-201ENST00000549140 543 ntTSL 4 BASIC4.47□□□□□ -1.69
MSH3P20585 CYB5AP5-201ENST00000549779 389 ntBASIC4.47□□□□□ -1.69
MSH3P20585 AC007424.1-205ENST00000552615 579 ntTSL 4 BASIC4.47□□□□□ -1.69
MSH3P20585 RN7SL622P-201ENST00000585292 275 ntBASIC4.47□□□□□ -1.69
MSH3P20585 AC008759.1-201ENST00000589783 983 ntBASIC4.47□□□□□ -1.69
MSH3P20585 AP001160.4-201ENST00000596971 382 ntBASIC4.47□□□□□ -1.69
MSH3P20585 AC234771.5-201ENST00000600161 514 ntBASIC4.47□□□□□ -1.69
MSH3P20585 PDZPH1P-202ENST00000602846 722 ntTSL 3 BASIC4.47□□□□□ -1.69
MSH3P20585 RPP40P2-201ENST00000603596 712 ntBASIC4.47□□□□□ -1.69
MSH3P20585 AC018618.2-201ENST00000604770 446 ntBASIC4.47□□□□□ -1.69
MSH3P20585 AC242426.3-203ENST00000606757 712 ntTSL 3 BASIC4.47□□□□□ -1.69
MSH3P20585 AC011374.2-201ENST00000607135 526 ntBASIC4.47□□□□□ -1.69
MSH3P20585 AC091979.2-201ENST00000607514 214 ntBASIC4.47□□□□□ -1.69
MSH3P20585 AC093673.2-201ENST00000609674 331 ntBASIC4.47□□□□□ -1.69
MSH3P20585 AC109809.1-201ENST00000619665 545 ntBASIC4.47□□□□□ -1.69
MSH3P20585 AP000346.3-201ENST00000622821 210 ntBASIC4.47□□□□□ -1.69
MSH3P20585 AC091905.2-201ENST00000623143 306 ntBASIC4.47□□□□□ -1.69
MSH3P20585 AC010435.1-201ENST00000623353 1177 ntBASIC4.47□□□□□ -1.69
MSH3P20585 AC097520.1-201ENST00000624435 385 ntBASIC4.47□□□□□ -1.69
MSH3P20585 AC055839.1-201ENST00000634467 498 ntBASIC4.47□□□□□ -1.69
MSH3P20585 BAALC-AS1-201ENST00000499522 1353 ntTSL 5 BASIC4.47□□□□□ -1.69
MSH3P20585 AL132640.2-201ENST00000559968 1698 ntBASIC4.47□□□□□ -1.69
MSH3P20585 SUPT16HP1-201ENST00000537175 3133 ntBASIC4.47□□□□□ -1.69
MSH3P20585 CPHL1P-201ENST00000461341 3407 ntBASIC4.47□□□□□ -1.69
MSH3P20585 OR56B2P-202ENST00000641377 2453 ntBASIC4.47□□□□□ -1.69
MSH3P20585 RAPGEF6-201ENST00000296859 5618 ntAPPRIS ALT2 TSL 1 (best) BASIC4.47□□□□□ -1.69
MSH3P20585 RBBP6-203ENST00000381039 3384 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
MSH3P20585 ZNF705D-202ENST00000400085 3377 ntAPPRIS P1 TSL 5 BASIC4.47□□□□□ -1.69
MSH3P20585 AC139769.1-204ENST00000472297 1931 ntBASIC4.46□□□□□ -1.69
MSH3P20585 NCOA1-201ENST00000288599 6952 ntAPPRIS ALT2 TSL 1 (best) BASIC4.46□□□□□ -1.69
MSH3P20585 MYCT1-201ENST00000367245 3030 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.69
MSH3P20585 ELAVL4-203ENST00000371821 3349 ntTSL 5 BASIC4.46□□□□□ -1.69
MSH3P20585 STEAP2-203ENST00000394622 6612 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.69
MSH3P20585 LINC01630-206ENST00000635103 4292 ntTSL 5 BASIC4.46□□□□□ -1.7
MSH3P20585 TECRL-201ENST00000381210 3573 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
MSH3P20585 HELLS-204ENST00000371332 2675 ntTSL 5 BASIC4.46□□□□□ -1.7
MSH3P20585 ADGRL3-203ENST00000506700 4838 ntTSL 5 BASIC4.46□□□□□ -1.7
MSH3P20585 LINC00622-201ENST00000562811 1570 ntBASIC4.46□□□□□ -1.7
MSH3P20585 CSN3-201ENST00000304954 836 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
MSH3P20585 AC019155.1-201ENST00000382242 574 ntBASIC4.46□□□□□ -1.7
MSH3P20585 MIR659-201ENST00000384963 97 ntBASIC4.46□□□□□ -1.7
MSH3P20585 ARL4A-204ENST00000396664 1144 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
MSH3P20585 HMGB1P13-201ENST00000406019 642 ntBASIC4.46□□□□□ -1.7
MSH3P20585 AL365184.1-201ENST00000413801 572 ntTSL 3 BASIC4.46□□□□□ -1.7
MSH3P20585 CLYBL-AS1-201ENST00000416009 621 ntTSL 3 BASIC4.46□□□□□ -1.7
MSH3P20585 LINC01347-201ENST00000417964 355 ntBASIC4.46□□□□□ -1.7
MSH3P20585 TEX41-203ENST00000420472 765 ntTSL 3 BASIC4.46□□□□□ -1.7
MSH3P20585 AL590609.2-201ENST00000421430 368 ntBASIC4.46□□□□□ -1.7
MSH3P20585 LINC00502-201ENST00000423621 445 ntTSL 3 BASIC4.46□□□□□ -1.7
MSH3P20585 ETF1P3-201ENST00000430422 1160 ntBASIC4.46□□□□□ -1.7
MSH3P20585 CEACAMP9-201ENST00000442990 513 ntBASIC4.46□□□□□ -1.7
MSH3P20585 EXOSC3P1-201ENST00000448649 500 ntBASIC4.46□□□□□ -1.7
MSH3P20585 Z95152.1-201ENST00000453556 656 ntBASIC4.46□□□□□ -1.7
MSH3P20585 RPL10P17-201ENST00000453852 316 ntBASIC4.46□□□□□ -1.7
MSH3P20585 RPS29P33-201ENST00000456717 146 ntBASIC4.46□□□□□ -1.7
MSH3P20585 AC093297.2-204ENST00000508945 295 ntTSL 3 BASIC4.46□□□□□ -1.7
MSH3P20585 RNA5SP497-201ENST00000516081 97 ntBASIC4.46□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 127.1 ms