Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 FTO-203ENST00000460382 1517 ntTSL 5 BASIC4.41□□□□□ -1.7
TM9SF3Q9HD45 C1orf112-203ENST00000413811 2661 ntAPPRIS ALT2 TSL 1 (best) BASIC4.4□□□□□ -1.7
TM9SF3Q9HD45 VIP-202ENST00000367244 1584 ntAPPRIS P4 TSL 1 (best) BASIC4.4□□□□□ -1.7
TM9SF3Q9HD45 OSBPL11-201ENST00000296220 4191 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.7
TM9SF3Q9HD45 STK31-205ENST00000433467 3085 ntTSL 2 BASIC4.4□□□□□ -1.7
TM9SF3Q9HD45 MNDA-201ENST00000368141 1752 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.7
TM9SF3Q9HD45 SMG1P1-206ENST00000431681 2913 ntTSL 2 BASIC4.4□□□□□ -1.7
TM9SF3Q9HD45 ADAM29-214ENST00000618444 2949 ntAPPRIS P1 TSL 4 BASIC4.4□□□□□ -1.7
TM9SF3Q9HD45 ZNF700-202ENST00000482090 3113 ntAPPRIS ALT2 TSL 2 BASIC4.4□□□□□ -1.7
TM9SF3Q9HD45 PRKACB-202ENST00000370682 4288 ntTSL 1 (best) BASIC4.4□□□□□ -1.7
TM9SF3Q9HD45 CEP192-201ENST00000325971 7764 ntTSL 5 BASIC4.4□□□□□ -1.7
TM9SF3Q9HD45 RNU1-87P-201ENST00000363727 170 ntBASIC4.4□□□□□ -1.71
TM9SF3Q9HD45 SNORA62.2-201ENST00000364672 152 ntBASIC4.4□□□□□ -1.71
TM9SF3Q9HD45 KLRC3-201ENST00000381903 798 ntAPPRIS P3 TSL 1 (best) BASIC4.4□□□□□ -1.71
TM9SF3Q9HD45 RNU1-13P-201ENST00000384499 162 ntBASIC4.4□□□□□ -1.71
TM9SF3Q9HD45 MIR7-1-201ENST00000384871 110 ntBASIC4.4□□□□□ -1.71
TM9SF3Q9HD45 AL022722.2-201ENST00000402519 180 ntBASIC4.4□□□□□ -1.71
TM9SF3Q9HD45 AC114814.2-201ENST00000419195 485 ntBASIC4.4□□□□□ -1.71
TM9SF3Q9HD45 AP000233.1-201ENST00000426609 291 ntTSL 3 BASIC4.4□□□□□ -1.71
TM9SF3Q9HD45 Z99127.2-201ENST00000441426 334 ntBASIC4.4□□□□□ -1.71
TM9SF3Q9HD45 RAD1P2-201ENST00000446414 663 ntBASIC4.4□□□□□ -1.71
TM9SF3Q9HD45 LINC01034-201ENST00000448806 277 ntTSL 3 BASIC4.4□□□□□ -1.71
TM9SF3Q9HD45 AP003774.2-202ENST00000449694 341 ntTSL 3 BASIC4.4□□□□□ -1.71
TM9SF3Q9HD45 LINC01753-201ENST00000458145 631 ntTSL 3 BASIC4.4□□□□□ -1.71
TM9SF3Q9HD45 RPS26P28-201ENST00000470806 348 ntBASIC4.4□□□□□ -1.71
TM9SF3Q9HD45 AC025445.1-201ENST00000502728 300 ntBASIC4.4□□□□□ -1.71
TM9SF3Q9HD45 AC112198.3-201ENST00000505950 441 ntTSL 3 BASIC4.4□□□□□ -1.71
TM9SF3Q9HD45 SNHG27-203ENST00000514222 680 ntTSL 3 BASIC4.4□□□□□ -1.71
TM9SF3Q9HD45 RN7SKP82-201ENST00000516786 223 ntBASIC4.4□□□□□ -1.71
TM9SF3Q9HD45 AP001360.2-201ENST00000534423 562 ntTSL 4 BASIC4.4□□□□□ -1.71
TM9SF3Q9HD45 AC009803.3-201ENST00000548457 540 ntTSL 3 BASIC4.4□□□□□ -1.71
TM9SF3Q9HD45 AC069437.1-201ENST00000551372 512 ntTSL 4 BASIC4.4□□□□□ -1.71
TM9SF3Q9HD45 OR4U1P-201ENST00000554958 912 ntBASIC4.4□□□□□ -1.71
TM9SF3Q9HD45 AC027455.1-201ENST00000574104 594 ntBASIC4.4□□□□□ -1.71
TM9SF3Q9HD45 ADAD1P2-201ENST00000588476 646 ntBASIC4.4□□□□□ -1.71
TM9SF3Q9HD45 AC093227.2-201ENST00000589357 285 ntBASIC4.4□□□□□ -1.71
TM9SF3Q9HD45 AC067852.4-201ENST00000590314 478 ntBASIC4.4□□□□□ -1.71
TM9SF3Q9HD45 RPL7P50-201ENST00000600588 727 ntBASIC4.4□□□□□ -1.71
TM9SF3Q9HD45 C5orf63-207ENST00000606937 607 ntTSL 2 BASIC4.4□□□□□ -1.71
TM9SF3Q9HD45 FAM49B-229ENST00000615041 750 ntTSL 5 BASIC4.4□□□□□ -1.71
TM9SF3Q9HD45 AC092683.2-203ENST00000618807 788 ntTSL 5 BASIC4.4□□□□□ -1.71
TM9SF3Q9HD45 MIR492-201ENST00000638676 116 ntBASIC4.4□□□□□ -1.71
TM9SF3Q9HD45 ETV1-205ENST00000405192 4402 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
TM9SF3Q9HD45 AC138393.1-206ENST00000540997 1886 ntBASIC4.4□□□□□ -1.71
TM9SF3Q9HD45 C5orf63-205ENST00000535381 5680 ntTSL 3 BASIC4.4□□□□□ -1.71
TM9SF3Q9HD45 BCAP29-203ENST00000379119 5773 ntTSL 3 BASIC4.4□□□□□ -1.71
TM9SF3Q9HD45 LINC00283-201ENST00000430111 1947 ntTSL 5 BASIC4.4□□□□□ -1.71
TM9SF3Q9HD45 AL353743.4-201ENST00000422653 1547 ntBASIC4.4□□□□□ -1.71
TM9SF3Q9HD45 DCAF13P3-201ENST00000561147 1334 ntBASIC4.4□□□□□ -1.71
TM9SF3Q9HD45 ATP2C1-212ENST00000507488 3579 ntAPPRIS ALT2 TSL 2 BASIC4.4□□□□□ -1.71
TM9SF3Q9HD45 OR5H14-202ENST00000641380 7323 ntAPPRIS P1 BASIC4.4□□□□□ -1.71
TM9SF3Q9HD45 USP44-208ENST00000552440 1818 ntTSL 5 BASIC4.39□□□□□ -1.71
TM9SF3Q9HD45 DEPDC1-202ENST00000456315 5331 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
TM9SF3Q9HD45 TLR3-201ENST00000296795 6015 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
TM9SF3Q9HD45 CD86-203ENST00000393627 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC4.39□□□□□ -1.71
TM9SF3Q9HD45 CDH8-205ENST00000577730 8009 ntTSL 5 BASIC4.39□□□□□ -1.71
TM9SF3Q9HD45 ESCO1-204ENST00000622333 1850 ntTSL 2 BASIC4.39□□□□□ -1.71
TM9SF3Q9HD45 TAB3-204ENST00000378932 3698 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
TM9SF3Q9HD45 C12orf60-201ENST00000330828 1684 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
TM9SF3Q9HD45 KRTAP24-1-201ENST00000340345 1650 ntAPPRIS P1 BASIC4.39□□□□□ -1.71
TM9SF3Q9HD45 AL360270.1-201ENST00000440689 2359 ntTSL 2 BASIC4.39□□□□□ -1.71
TM9SF3Q9HD45 MPDZ-215ENST00000541718 7603 ntAPPRIS P3 TSL 1 (best) BASIC4.39□□□□□ -1.71
TM9SF3Q9HD45 MARCH1-201ENST00000274056 5367 ntAPPRIS P1 TSL 4 BASIC4.39□□□□□ -1.71
TM9SF3Q9HD45 RAD51AP1-201ENST00000228843 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC4.39□□□□□ -1.71
TM9SF3Q9HD45 CCNYL2-202ENST00000637719 3311 ntTSL 2 BASIC4.39□□□□□ -1.71
TM9SF3Q9HD45 AC012020.1-201ENST00000624541 1728 ntBASIC4.39□□□□□ -1.71
TM9SF3Q9HD45 NCK1-204ENST00000469404 2403 ntTSL 2 BASIC4.39□□□□□ -1.71
TM9SF3Q9HD45 SUPT16HP1-201ENST00000537175 3133 ntBASIC4.39□□□□□ -1.71
TM9SF3Q9HD45 RNA5SP502-201ENST00000362694 119 ntBASIC4.39□□□□□ -1.71
TM9SF3Q9HD45 MIR134-201ENST00000385258 73 ntBASIC4.39□□□□□ -1.71
TM9SF3Q9HD45 SNORA48.7-201ENST00000391302 135 ntBASIC4.39□□□□□ -1.71
TM9SF3Q9HD45 AL607077.1-201ENST00000401718 499 ntBASIC4.39□□□□□ -1.71
TM9SF3Q9HD45 AL139095.3-201ENST00000419672 1203 ntBASIC4.39□□□□□ -1.71
TM9SF3Q9HD45 AC008154.2-201ENST00000420268 414 ntTSL 3 BASIC4.39□□□□□ -1.71
TM9SF3Q9HD45 LINC01074-201ENST00000422527 555 ntTSL 3 BASIC4.39□□□□□ -1.71
TM9SF3Q9HD45 DYNLL1P7-201ENST00000429273 258 ntBASIC4.39□□□□□ -1.71
TM9SF3Q9HD45 FTH1P6-201ENST00000430768 320 ntBASIC4.39□□□□□ -1.71
TM9SF3Q9HD45 AL355592.1-201ENST00000450292 386 ntTSL 2 BASIC4.39□□□□□ -1.71
TM9SF3Q9HD45 LINC01014-203ENST00000455307 548 ntTSL 2 BASIC4.39□□□□□ -1.71
TM9SF3Q9HD45 SEPT14P1-201ENST00000458703 648 ntBASIC4.39□□□□□ -1.71
TM9SF3Q9HD45 CFAP44-AS1-202ENST00000498480 686 ntTSL 3 BASIC4.39□□□□□ -1.71
TM9SF3Q9HD45 AC092834.1-201ENST00000506514 442 ntTSL 3 BASIC4.39□□□□□ -1.71
TM9SF3Q9HD45 SLC25A15P5-201ENST00000508033 253 ntBASIC4.39□□□□□ -1.71
TM9SF3Q9HD45 AC018797.3-201ENST00000513388 1241 ntBASIC4.39□□□□□ -1.71
TM9SF3Q9HD45 RNU6-491P-201ENST00000516099 110 ntBASIC4.39□□□□□ -1.71
TM9SF3Q9HD45 HMGB1P23-201ENST00000518743 568 ntBASIC4.39□□□□□ -1.71
TM9SF3Q9HD45 AC093331.2-201ENST00000520459 677 ntTSL 3 BASIC4.39□□□□□ -1.71
TM9SF3Q9HD45 OR4A2P-201ENST00000527276 913 ntBASIC4.39□□□□□ -1.71
TM9SF3Q9HD45 AC023034.1-201ENST00000558141 518 ntTSL 3 BASIC4.39□□□□□ -1.71
TM9SF3Q9HD45 AC051619.4-201ENST00000560034 292 ntTSL 5 BASIC4.39□□□□□ -1.71
TM9SF3Q9HD45 TTN-AS1-217ENST00000585625 945 ntTSL 5 BASIC4.39□□□□□ -1.71
TM9SF3Q9HD45 AC010680.4-201ENST00000605334 543 ntBASIC4.39□□□□□ -1.71
TM9SF3Q9HD45 AC084036.1-201ENST00000609190 508 ntBASIC4.39□□□□□ -1.71
TM9SF3Q9HD45 AC243829.4-202ENST00000610845 410 ntTSL 5 BASIC4.39□□□□□ -1.71
TM9SF3Q9HD45 AL669942.2-201ENST00000620352 697 ntBASIC4.39□□□□□ -1.71
TM9SF3Q9HD45 AL136084.2-203ENST00000630758 690 ntTSL 5 BASIC4.39□□□□□ -1.71
TM9SF3Q9HD45 AC140479.6-201ENST00000633535 357 ntBASIC4.39□□□□□ -1.71
TM9SF3Q9HD45 LINC01709-202ENST00000635702 1204 ntTSL 5 BASIC4.39□□□□□ -1.71
TM9SF3Q9HD45 AL355852.1-201ENST00000454081 1771 ntBASIC4.39□□□□□ -1.71
TM9SF3Q9HD45 AC010186.3-201ENST00000537616 2508 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 77.9 ms