Protein–RNA interactions for Protein: Q12873

CHD3, Chromodomain-helicase-DNA-binding protein 3, humanhuman

Known RBP Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3Q12873 LTN1-207ENST00000614971 7756 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
CHD3Q12873 TLR3-201ENST00000296795 6015 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
CHD3Q12873 AP001803.2-201ENST00000532274 2034 ntTSL 2 BASIC3.57□□□□□ -1.84
CHD3Q12873 SDCBP-213ENST00000630925 2076 ntTSL 5 BASIC3.57□□□□□ -1.84
CHD3Q12873 AL133412.1-201ENST00000380194 2992 ntBASIC3.57□□□□□ -1.84
CHD3Q12873 AC019155.1-201ENST00000382242 574 ntBASIC3.57□□□□□ -1.84
CHD3Q12873 MFAP5-202ENST00000396549 1195 ntTSL 2 BASIC3.57□□□□□ -1.84
CHD3Q12873 MIR1183-201ENST00000408856 89 ntBASIC3.57□□□□□ -1.84
CHD3Q12873 RN7SKP182-201ENST00000410772 298 ntBASIC3.57□□□□□ -1.84
CHD3Q12873 RPL23AP25-201ENST00000430973 463 ntBASIC3.57□□□□□ -1.84
CHD3Q12873 AL583835.2-201ENST00000435483 500 ntTSL 2 BASIC3.57□□□□□ -1.84
CHD3Q12873 LINC01828-201ENST00000445514 531 ntTSL 4 BASIC3.57□□□□□ -1.84
CHD3Q12873 AC112184.1-201ENST00000505179 312 ntBASIC3.57□□□□□ -1.84
CHD3Q12873 WWC2-AS1-201ENST00000511846 404 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
CHD3Q12873 AC008694.2-201ENST00000517591 306 ntBASIC3.57□□□□□ -1.84
CHD3Q12873 TTN-AS1-243ENST00000591867 748 ntTSL 5 BASIC3.57□□□□□ -1.84
CHD3Q12873 AC067968.2-201ENST00000592583 566 ntTSL 4 BASIC3.57□□□□□ -1.84
CHD3Q12873 AC025946.2-201ENST00000603398 234 ntBASIC3.57□□□□□ -1.84
CHD3Q12873 AC092636.1-201ENST00000608609 415 ntTSL 2 BASIC3.57□□□□□ -1.84
CHD3Q12873 AC026368.1-201ENST00000614934 690 ntBASIC3.57□□□□□ -1.84
CHD3Q12873 MALAT1-210ENST00000617489 318 ntTSL 2 BASIC3.57□□□□□ -1.84
CHD3Q12873 AL645927.2-201ENST00000618350 349 ntBASIC3.57□□□□□ -1.84
CHD3Q12873 CNOT10-206ENST00000454516 2760 ntTSL 2 BASIC3.57□□□□□ -1.84
CHD3Q12873 AC079915.1-201ENST00000584382 2780 ntTSL 2 BASIC3.57□□□□□ -1.84
CHD3Q12873 MAPK10-320ENST00000641462 6696 ntBASIC3.57□□□□□ -1.84
CHD3Q12873 GLCE-201ENST00000261858 5037 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
CHD3Q12873 STK31-205ENST00000433467 3085 ntTSL 2 BASIC3.57□□□□□ -1.84
CHD3Q12873 CEP152-203ENST00000399334 5097 ntAPPRIS P3 TSL 1 (best) BASIC3.57□□□□□ -1.84
CHD3Q12873 AC233968.1-201ENST00000611212 1300 ntBASIC3.57□□□□□ -1.84
CHD3Q12873 OR8D1-202ENST00000641015 8286 ntAPPRIS P1 BASIC3.57□□□□□ -1.84
CHD3Q12873 OR8D1-203ENST00000641897 8285 ntAPPRIS P1 BASIC3.57□□□□□ -1.84
CHD3Q12873 FAM169A-203ENST00000510496 5810 ntTSL 5 BASIC3.57□□□□□ -1.84
CHD3Q12873 KIAA1109-203ENST00000388738 15574 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
CHD3Q12873 RGS1-201ENST00000367459 1405 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
CHD3Q12873 EED-206ENST00000527888 1422 ntTSL 2 BASIC3.57□□□□□ -1.84
CHD3Q12873 KMO-204ENST00000366559 5261 ntAPPRIS P2 TSL 1 (best) BASIC3.57□□□□□ -1.84
CHD3Q12873 PTPN22-202ENST00000420377 2726 ntAPPRIS ALT2 TSL 1 (best) BASIC3.56□□□□□ -1.84
CHD3Q12873 CRYBB2P1-203ENST00000415709 538 ntBASIC3.56□□□□□ -1.84
CHD3Q12873 AL161631.1-201ENST00000417933 486 ntBASIC3.56□□□□□ -1.84
CHD3Q12873 AL035246.1-201ENST00000433554 1255 ntBASIC3.56□□□□□ -1.84
CHD3Q12873 MAPRE1P3-201ENST00000435438 796 ntBASIC3.56□□□□□ -1.84
CHD3Q12873 RPS4XP4-201ENST00000443195 763 ntBASIC3.56□□□□□ -1.84
CHD3Q12873 AL451050.1-201ENST00000450126 415 ntBASIC3.56□□□□□ -1.84
CHD3Q12873 VN1R105P-201ENST00000486595 910 ntBASIC3.56□□□□□ -1.84
CHD3Q12873 AC092546.1-202ENST00000505628 499 ntTSL 2 BASIC3.56□□□□□ -1.84
CHD3Q12873 AC012055.1-201ENST00000511346 1144 ntTSL 3 BASIC3.56□□□□□ -1.84
CHD3Q12873 AC104393.1-201ENST00000517495 255 ntTSL 3 BASIC3.56□□□□□ -1.84
CHD3Q12873 PAICSP4-201ENST00000517543 1253 ntBASIC3.56□□□□□ -1.84
CHD3Q12873 AC026403.1-201ENST00000518938 295 ntBASIC3.56□□□□□ -1.84
CHD3Q12873 AC076968.1-201ENST00000566418 429 ntTSL 5 BASIC3.56□□□□□ -1.84
CHD3Q12873 AC008752.1-201ENST00000590046 408 ntTSL 3 BASIC3.56□□□□□ -1.84
CHD3Q12873 AC079587.1-201ENST00000603846 277 ntBASIC3.56□□□□□ -1.84
CHD3Q12873 HMGB1P50-201ENST00000605814 607 ntBASIC3.56□□□□□ -1.84
CHD3Q12873 FAM49B-229ENST00000615041 750 ntTSL 5 BASIC3.56□□□□□ -1.84
CHD3Q12873 MIR7151-201ENST00000617477 60 ntBASIC3.56□□□□□ -1.84
CHD3Q12873 AL669942.2-201ENST00000620352 697 ntBASIC3.56□□□□□ -1.84
CHD3Q12873 AC245452.5-201ENST00000620649 780 ntTSL 3 BASIC3.56□□□□□ -1.84
CHD3Q12873 BX088723.1-201ENST00000637785 708 ntTSL 5 BASIC3.56□□□□□ -1.84
CHD3Q12873 RACGAP1-202ENST00000427314 3229 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
CHD3Q12873 AC021355.1-202ENST00000519996 1633 ntTSL 2 BASIC3.56□□□□□ -1.84
CHD3Q12873 C5orf63-205ENST00000535381 5680 ntTSL 3 BASIC3.56□□□□□ -1.84
CHD3Q12873 IFI44L-201ENST00000370751 5874 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
CHD3Q12873 OR5AQ1P-202ENST00000641257 1534 ntBASIC3.56□□□□□ -1.84
CHD3Q12873 KMT2E-216ENST00000622386 1588 ntTSL 5 BASIC3.56□□□□□ -1.84
CHD3Q12873 HERC4-204ENST00000395198 4445 ntAPPRIS ALT1 TSL 1 (best) BASIC3.56□□□□□ -1.84
CHD3Q12873 RNA5SP124-201ENST00000362739 110 ntBASIC3.56□□□□□ -1.84
CHD3Q12873 RNA5SP399-201ENST00000364003 117 ntBASIC3.56□□□□□ -1.84
CHD3Q12873 AL929288.1-201ENST00000426262 746 ntTSL 3 BASIC3.56□□□□□ -1.84
CHD3Q12873 AL590378.1-201ENST00000426818 303 ntTSL 3 BASIC3.56□□□□□ -1.84
CHD3Q12873 NUDT7-202ENST00000437314 930 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
CHD3Q12873 LINC00376-201ENST00000439454 693 ntTSL 5 BASIC3.56□□□□□ -1.84
CHD3Q12873 AL133477.1-201ENST00000457472 514 ntBASIC3.56□□□□□ -1.84
CHD3Q12873 NECTIN3-AS1-202ENST00000467426 664 ntTSL 3 BASIC3.56□□□□□ -1.84
CHD3Q12873 SUB1-203ENST00000502897 562 ntAPPRIS P1 TSL 4 BASIC3.56□□□□□ -1.84
CHD3Q12873 AC013549.2-201ENST00000526953 489 ntTSL 3 BASIC3.56□□□□□ -1.84
CHD3Q12873 AP000462.1-201ENST00000535704 818 ntTSL 3 BASIC3.56□□□□□ -1.84
CHD3Q12873 RFPL1S-203ENST00000539579 330 ntBASIC3.56□□□□□ -1.84
CHD3Q12873 GTF2IP22-201ENST00000554443 182 ntBASIC3.56□□□□□ -1.84
CHD3Q12873 ZNF562-205ENST00000587392 583 ntTSL 2 BASIC3.56□□□□□ -1.84
CHD3Q12873 AC112230.1-201ENST00000604342 547 ntBASIC3.56□□□□□ -1.84
CHD3Q12873 AC107031.1-201ENST00000604939 347 ntTSL 2 BASIC3.56□□□□□ -1.84
CHD3Q12873 AC007179.3-201ENST00000604976 235 ntBASIC3.56□□□□□ -1.84
CHD3Q12873 AC025175.1-201ENST00000606482 759 ntBASIC3.56□□□□□ -1.84
CHD3Q12873 CR392039.5-201ENST00000623201 510 ntBASIC3.56□□□□□ -1.84
CHD3Q12873 AC020978.9-201ENST00000624380 1141 ntBASIC3.56□□□□□ -1.84
CHD3Q12873 BMS1P21-201ENST00000634565 365 ntBASIC3.56□□□□□ -1.84
CHD3Q12873 AC116667.1-201ENST00000604855 2072 ntBASIC3.56□□□□□ -1.84
CHD3Q12873 PHC3-215ENST00000495893 12666 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
CHD3Q12873 VPS35P1-201ENST00000563400 1518 ntBASIC3.55□□□□□ -1.84
CHD3Q12873 RAG2-201ENST00000311485 2388 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
CHD3Q12873 NAMPTP1-201ENST00000440465 2514 ntBASIC3.55□□□□□ -1.84
CHD3Q12873 MIR634-201ENST00000385208 97 ntBASIC3.55□□□□□ -1.84
CHD3Q12873 RNA5SP39-201ENST00000411245 120 ntBASIC3.55□□□□□ -1.84
CHD3Q12873 AL391645.1-201ENST00000417409 506 ntTSL 3 BASIC3.55□□□□□ -1.84
CHD3Q12873 AL590999.1-206ENST00000437947 436 ntTSL 3 BASIC3.55□□□□□ -1.84
CHD3Q12873 AL500522.2-201ENST00000448562 343 ntBASIC3.55□□□□□ -1.84
CHD3Q12873 AC108022.1-201ENST00000493466 478 ntBASIC3.55□□□□□ -1.84
CHD3Q12873 AC113404.3-201ENST00000506621 555 ntTSL 5 BASIC3.55□□□□□ -1.84
CHD3Q12873 ADGRL3-AS1-203ENST00000506704 606 ntTSL 5 BASIC3.55□□□□□ -1.84
CHD3Q12873 AC012229.1-201ENST00000558699 499 ntTSL 4 BASIC3.55□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 107 ms