Protein–RNA interactions for Protein: P31269

HOXA9, Homeobox protein Hox-A9, humanhuman

Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9P31269 KCNU1-201ENST00000399881 3695 ntAPPRIS P1 TSL 2 BASIC4.31□□□□□ -1.72
HOXA9P31269 AC009229.4-201ENST00000623854 1947 ntBASIC4.31□□□□□ -1.72
HOXA9P31269 TUG1-201ENST00000519077 5673 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
HOXA9P31269 LINC00862-201ENST00000367355 1417 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
HOXA9P31269 ERCC6-202ENST00000374127 1782 ntBASIC4.3□□□□□ -1.72
HOXA9P31269 LINS1-201ENST00000314742 4821 ntAPPRIS P1 TSL 5 BASIC4.3□□□□□ -1.72
HOXA9P31269 UNC13C-201ENST00000260323 12946 ntAPPRIS P1 TSL 5 BASIC4.3□□□□□ -1.72
HOXA9P31269 OR10AB1P-202ENST00000641219 1686 ntBASIC4.3□□□□□ -1.72
HOXA9P31269 DOCK7-219ENST00000635253 6423 ntAPPRIS ALT2 TSL 5 BASIC4.3□□□□□ -1.72
HOXA9P31269 OR1E2-201ENST00000248384 972 ntAPPRIS P1 BASIC4.3□□□□□ -1.72
HOXA9P31269 BCL2A1-201ENST00000267953 1033 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
HOXA9P31269 OR51F2-201ENST00000322110 993 ntAPPRIS ALT2 BASIC4.3□□□□□ -1.72
HOXA9P31269 RNU1-108P-201ENST00000362556 161 ntBASIC4.3□□□□□ -1.72
HOXA9P31269 OR2B3-201ENST00000377173 1106 ntAPPRIS P1 BASIC4.3□□□□□ -1.72
HOXA9P31269 RNU6-213P-201ENST00000384051 104 ntBASIC4.3□□□□□ -1.72
HOXA9P31269 ZC3H7A-202ENST00000396516 3845 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
HOXA9P31269 TTTY12-201ENST00000413466 979 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
HOXA9P31269 LINC00446-201ENST00000414743 459 ntTSL 5 BASIC4.3□□□□□ -1.72
HOXA9P31269 MAP1LC3BP1-201ENST00000417653 379 ntBASIC4.3□□□□□ -1.72
HOXA9P31269 AL162400.1-201ENST00000418091 359 ntTSL 5 BASIC4.3□□□□□ -1.72
HOXA9P31269 EIF4EP1-201ENST00000422311 642 ntBASIC4.3□□□□□ -1.72
HOXA9P31269 TRAPPC2P5-201ENST00000426293 308 ntBASIC4.3□□□□□ -1.72
HOXA9P31269 AL050321.1-201ENST00000432363 400 ntBASIC4.3□□□□□ -1.72
HOXA9P31269 AL035246.1-201ENST00000433554 1255 ntBASIC4.3□□□□□ -1.72
HOXA9P31269 AP001432.1-201ENST00000440629 520 ntTSL 2 BASIC4.3□□□□□ -1.72
HOXA9P31269 OR52Y1P-201ENST00000452418 828 ntBASIC4.3□□□□□ -1.72
HOXA9P31269 AC133473.1-201ENST00000455173 299 ntBASIC4.3□□□□□ -1.72
HOXA9P31269 AC012158.1-204ENST00000483430 465 ntBASIC4.3□□□□□ -1.72
HOXA9P31269 UCHL1-AS1-201ENST00000507190 592 ntTSL 4 BASIC4.3□□□□□ -1.72
HOXA9P31269 LINC02483-201ENST00000512043 1143 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
HOXA9P31269 AC109635.6-201ENST00000525487 1113 ntBASIC4.3□□□□□ -1.72
HOXA9P31269 OR7E10P-201ENST00000526420 991 ntBASIC4.3□□□□□ -1.72
HOXA9P31269 LINC00944-201ENST00000536517 421 ntTSL 2 BASIC4.3□□□□□ -1.72
HOXA9P31269 AL359232.1-201ENST00000556361 442 ntTSL 3 BASIC4.3□□□□□ -1.72
HOXA9P31269 AC120057.2-201ENST00000571520 271 ntBASIC4.3□□□□□ -1.72
HOXA9P31269 AC107982.3-201ENST00000584957 985 ntBASIC4.3□□□□□ -1.72
HOXA9P31269 AL592436.1-201ENST00000605135 558 ntBASIC4.3□□□□□ -1.72
HOXA9P31269 AL008729.1-201ENST00000606627 553 ntTSL 4 BASIC4.3□□□□□ -1.72
HOXA9P31269 MAGI2-AS3-224ENST00000619135 205 ntTSL 5 BASIC4.3□□□□□ -1.72
HOXA9P31269 AL354798.1-201ENST00000622505 329 ntBASIC4.3□□□□□ -1.72
HOXA9P31269 SPTY2D1-AS1-205ENST00000635674 450 ntAPPRIS ALT2 TSL 2 BASIC4.3□□□□□ -1.72
HOXA9P31269 AC010329.2-201ENST00000595195 2737 ntBASIC4.3□□□□□ -1.72
HOXA9P31269 AL445437.1-201ENST00000623157 3087 ntBASIC4.3□□□□□ -1.72
HOXA9P31269 ZNF594-201ENST00000399604 4862 ntAPPRIS P1 BASIC4.3□□□□□ -1.72
HOXA9P31269 MLH3-212ENST00000556740 4491 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
HOXA9P31269 VPS13C-201ENST00000249837 13300 ntAPPRIS P3 TSL 1 (best) BASIC4.3□□□□□ -1.72
HOXA9P31269 SENP7-202ENST00000348610 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC4.3□□□□□ -1.72
HOXA9P31269 WDFY3-201ENST00000295888 14247 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
HOXA9P31269 IFI16-201ENST00000295809 2867 ntAPPRIS ALT2 TSL 5 BASIC4.3□□□□□ -1.72
HOXA9P31269 DPP10-204ENST00000409163 3883 ntAPPRIS ALT2 TSL 2 BASIC4.3□□□□□ -1.72
HOXA9P31269 RAP1B-201ENST00000250559 13438 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
HOXA9P31269 POSTN-201ENST00000379742 3071 ntAPPRIS ALT2 TSL 1 (best) BASIC4.3□□□□□ -1.72
HOXA9P31269 MNDA-201ENST00000368141 1752 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
HOXA9P31269 SCN3A-209ENST00000639244 8854 ntTSL 5 BASIC4.3□□□□□ -1.72
HOXA9P31269 AJ009632.2-204ENST00000635621 1401 ntTSL 5 BASIC4.29□□□□□ -1.72
HOXA9P31269 AC009313.2-201ENST00000417893 1941 ntBASIC4.29□□□□□ -1.72
HOXA9P31269 ZNF28-203ENST00000438150 5171 ntTSL 2 BASIC4.29□□□□□ -1.72
HOXA9P31269 ORC4-216ENST00000540442 6472 ntTSL 2 BASIC4.29□□□□□ -1.72
HOXA9P31269 SPAG5-AS1-202ENST00000424210 1551 ntTSL 2 BASIC4.29□□□□□ -1.72
HOXA9P31269 RNU6-146P-201ENST00000384602 108 ntBASIC4.29□□□□□ -1.72
HOXA9P31269 MIR449B-201ENST00000384995 97 ntBASIC4.29□□□□□ -1.72
HOXA9P31269 TRAV9-2-201ENST00000390441 394 ntAPPRIS P1 BASIC4.29□□□□□ -1.72
HOXA9P31269 TAS2R19-201ENST00000390673 1002 ntAPPRIS P1 BASIC4.29□□□□□ -1.72
HOXA9P31269 CLEC7A-206ENST00000396484 1000 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
HOXA9P31269 GALNT3-202ENST00000409882 2107 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
HOXA9P31269 AL133480.1-201ENST00000411561 638 ntTSL 2 BASIC4.29□□□□□ -1.72
HOXA9P31269 AC097717.1-233ENST00000413557 460 ntTSL 3 BASIC4.29□□□□□ -1.72
HOXA9P31269 BBIP1-203ENST00000423273 492 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
HOXA9P31269 RWDD4P2-201ENST00000426392 563 ntBASIC4.29□□□□□ -1.72
HOXA9P31269 TRGV7-201ENST00000427089 353 ntBASIC4.29□□□□□ -1.72
HOXA9P31269 ARL6IP1P2-201ENST00000431356 563 ntBASIC4.29□□□□□ -1.72
HOXA9P31269 AL445584.1-201ENST00000431451 330 ntBASIC4.29□□□□□ -1.72
HOXA9P31269 AC010890.1-202ENST00000432414 535 ntTSL 3 BASIC4.29□□□□□ -1.72
HOXA9P31269 FAM53B-AS1-201ENST00000432699 558 ntTSL 2 BASIC4.29□□□□□ -1.72
HOXA9P31269 LBX1-AS1-202ENST00000434878 418 ntTSL 5 BASIC4.29□□□□□ -1.72
HOXA9P31269 GYPE-202ENST00000437468 499 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
HOXA9P31269 AL160408.1-203ENST00000453568 631 ntTSL 5 BASIC4.29□□□□□ -1.72
HOXA9P31269 SEC22A-207ENST00000481965 673 ntTSL 3 BASIC4.29□□□□□ -1.72
HOXA9P31269 RWDD4P1-201ENST00000488019 565 ntBASIC4.29□□□□□ -1.72
HOXA9P31269 AC108145.1-201ENST00000503770 153 ntBASIC4.29□□□□□ -1.72
HOXA9P31269 MGAT4D-203ENST00000511113 1125 ntAPPRIS P2 TSL 5 BASIC4.29□□□□□ -1.72
HOXA9P31269 MTHFD2P4-201ENST00000515074 1025 ntBASIC4.29□□□□□ -1.72
HOXA9P31269 PTS-202ENST00000524931 696 ntTSL 3 BASIC4.29□□□□□ -1.72
HOXA9P31269 UTS2-201ENST00000054668 420 ntAPPRIS P4 TSL 1 (best) BASIC4.29□□□□□ -1.72
HOXA9P31269 AC063950.1-201ENST00000552036 308 ntBASIC4.29□□□□□ -1.72
HOXA9P31269 AL049779.1-201ENST00000553306 670 ntTSL 2 BASIC4.29□□□□□ -1.72
HOXA9P31269 MTND6P33-201ENST00000571794 183 ntBASIC4.29□□□□□ -1.72
HOXA9P31269 AC005828.3-201ENST00000583552 591 ntTSL 5 BASIC4.29□□□□□ -1.72
HOXA9P31269 RPS4XP16-203ENST00000596904 698 ntTSL 5 BASIC4.29□□□□□ -1.72
HOXA9P31269 ZNF836-203ENST00000597065 808 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
HOXA9P31269 AC010615.3-201ENST00000597319 394 ntBASIC4.29□□□□□ -1.72
HOXA9P31269 AC008739.3-201ENST00000603262 127 ntBASIC4.29□□□□□ -1.72
HOXA9P31269 LINC01440-205ENST00000608080 737 ntTSL 3 BASIC4.29□□□□□ -1.72
HOXA9P31269 AC243829.4-202ENST00000610845 410 ntTSL 5 BASIC4.29□□□□□ -1.72
HOXA9P31269 NF1P10-201ENST00000613227 742 ntBASIC4.29□□□□□ -1.72
HOXA9P31269 ADGRL3-203ENST00000506700 4838 ntTSL 5 BASIC4.29□□□□□ -1.72
HOXA9P31269 NCOA1-201ENST00000288599 6952 ntAPPRIS ALT2 TSL 1 (best) BASIC4.29□□□□□ -1.72
HOXA9P31269 KCNJ13-201ENST00000233826 2950 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
HOXA9P31269 MPDZ-215ENST00000541718 7603 ntAPPRIS P3 TSL 1 (best) BASIC4.29□□□□□ -1.72
HOXA9P31269 PLS3-203ENST00000420625 3150 ntTSL 5 BASIC4.28□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 70.9 ms