Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 ZNF790-201ENST00000356725 3037 ntAPPRIS P1 TSL 2 BASIC6.32□□□□□ -1.4
MSX1P28360 LRRC37B-220ENST00000584368 2773 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
MSX1P28360 AC132219.2-201ENST00000624416 2327 ntBASIC6.32□□□□□ -1.4
MSX1P28360 RMST-202ENST00000541282 2099 ntTSL 2 BASIC6.32□□□□□ -1.4
MSX1P28360 IQCH-214ENST00000629425 1822 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
MSX1P28360 ARHGEF9-229ENST00000637040 5001 ntTSL 5 BASIC6.32□□□□□ -1.4
MSX1P28360 AC099062.1-202ENST00000640362 3864 ntTSL 5 BASIC6.31□□□□□ -1.4
MSX1P28360 PRDM2-202ENST00000311066 7437 ntAPPRIS ALT2 TSL 5 BASIC6.31□□□□□ -1.4
MSX1P28360 MDM4-203ENST00000367182 10073 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
MSX1P28360 MIER3-205ENST00000409421 2152 ntTSL 2 BASIC6.31□□□□□ -1.4
MSX1P28360 SEC31A-207ENST00000443462 4042 ntTSL 2 BASIC6.31□□□□□ -1.4
MSX1P28360 AC020658.2-201ENST00000559030 4020 ntBASIC6.31□□□□□ -1.4
MSX1P28360 REST-201ENST00000309042 7300 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
MSX1P28360 LRRC37B-201ENST00000327564 3162 ntAPPRIS ALT2 TSL 1 (best) BASIC6.31□□□□□ -1.4
MSX1P28360 ENPP3-201ENST00000357639 3162 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
MSX1P28360 SPRY3-201ENST00000302805 9019 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
MSX1P28360 ECHDC1-210ENST00000454859 2341 ntAPPRIS P3 TSL 1 (best) BASIC6.31□□□□□ -1.4
MSX1P28360 CDH18-210ENST00000511273 2318 ntTSL 5 BASIC6.31□□□□□ -1.4
MSX1P28360 LRRC31-202ENST00000316428 2520 ntAPPRIS P3 TSL 1 (best) BASIC6.31□□□□□ -1.4
MSX1P28360 ZBTB8B-201ENST00000609129 12834 ntAPPRIS P1 TSL 5 BASIC6.31□□□□□ -1.4
MSX1P28360 SYTL5-201ENST00000297875 4722 ntTSL 5 BASIC6.31□□□□□ -1.4
MSX1P28360 ZNF3-203ENST00000303915 3473 ntAPPRIS P1 TSL 5 BASIC6.31□□□□□ -1.4
MSX1P28360 LINC01375-201ENST00000428485 1860 ntTSL 2 BASIC6.31□□□□□ -1.4
MSX1P28360 SEMA5A-AS1-201ENST00000510879 1679 ntTSL 2 BASIC6.31□□□□□ -1.4
MSX1P28360 AL355377.1-201ENST00000621125 1653 ntBASIC6.31□□□□□ -1.4
MSX1P28360 HIST1H2BA-201ENST00000274764 516 ntAPPRIS P1 BASIC6.31□□□□□ -1.4
MSX1P28360 RAET1L-201ENST00000286380 802 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
MSX1P28360 RPL24P4-201ENST00000326586 421 ntBASIC6.31□□□□□ -1.4
MSX1P28360 SUMO3-202ENST00000397893 520 ntTSL 2 BASIC6.31□□□□□ -1.4
MSX1P28360 AF274855.1-201ENST00000411474 850 ntTSL 3 BASIC6.31□□□□□ -1.4
MSX1P28360 LINC01058-201ENST00000420694 448 ntTSL 5 BASIC6.31□□□□□ -1.4
MSX1P28360 AL683807.1-202ENST00000432272 382 ntTSL 2 BASIC6.31□□□□□ -1.4
MSX1P28360 AC010881.1-201ENST00000433830 235 ntBASIC6.31□□□□□ -1.4
MSX1P28360 AL035551.1-201ENST00000446931 348 ntBASIC6.31□□□□□ -1.4
MSX1P28360 RNU7-66P-201ENST00000459469 62 ntBASIC6.31□□□□□ -1.4
MSX1P28360 AP003385.3-201ENST00000472498 287 ntBASIC6.31□□□□□ -1.4
MSX1P28360 AC126389.1-201ENST00000477436 290 ntBASIC6.31□□□□□ -1.4
MSX1P28360 RN7SL379P-201ENST00000479912 293 ntBASIC6.31□□□□□ -1.4
MSX1P28360 RPL37P23-201ENST00000492641 294 ntBASIC6.31□□□□□ -1.4
MSX1P28360 LINC00903-201ENST00000497854 223 ntTSL 3 BASIC6.31□□□□□ -1.4
MSX1P28360 MTND6P8-201ENST00000503471 522 ntBASIC6.31□□□□□ -1.4
MSX1P28360 AC008780.1-201ENST00000513392 409 ntTSL 5 BASIC6.31□□□□□ -1.4
MSX1P28360 RNU6-488P-201ENST00000515918 99 ntBASIC6.31□□□□□ -1.4
MSX1P28360 RNU6-1088P-201ENST00000516850 104 ntBASIC6.31□□□□□ -1.4
MSX1P28360 RNA5SP278-201ENST00000517055 102 ntBASIC6.31□□□□□ -1.4
MSX1P28360 AP003557.1-201ENST00000531715 585 ntTSL 3 BASIC6.31□□□□□ -1.4
MSX1P28360 LINC02425-201ENST00000536217 376 ntTSL 3 BASIC6.31□□□□□ -1.4
MSX1P28360 HSPE1P2-201ENST00000554777 306 ntBASIC6.31□□□□□ -1.4
MSX1P28360 PSMA6-214ENST00000556506 763 ntTSL 5 BASIC6.31□□□□□ -1.4
MSX1P28360 AC107958.1-201ENST00000556576 290 ntBASIC6.31□□□□□ -1.4
MSX1P28360 AC092718.6-202ENST00000563072 408 ntTSL 2 BASIC6.31□□□□□ -1.4
MSX1P28360 LINC02129-201ENST00000564381 692 ntTSL 5 BASIC6.31□□□□□ -1.4
MSX1P28360 AC025271.2-201ENST00000566990 800 ntTSL 3 BASIC6.31□□□□□ -1.4
MSX1P28360 AC138811.2-201ENST00000567078 764 ntAPPRIS P1 TSL 3 BASIC6.31□□□□□ -1.4
MSX1P28360 DSG1-AS1-202ENST00000578477 588 ntTSL 3 BASIC6.31□□□□□ -1.4
MSX1P28360 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC6.31□□□□□ -1.4
MSX1P28360 AC024267.2-201ENST00000582737 417 ntBASIC6.31□□□□□ -1.4
MSX1P28360 MIR4428-201ENST00000584884 73 ntBASIC6.31□□□□□ -1.4
MSX1P28360 TEX41-238ENST00000604253 709 ntTSL 5 BASIC6.31□□□□□ -1.4
MSX1P28360 Xist_exon4.1-201ENST00000615964 126 ntBASIC6.31□□□□□ -1.4
MSX1P28360 SLC14A1-201ENST00000321925 3971 ntAPPRIS P3 TSL 1 (best) BASIC6.31□□□□□ -1.4
MSX1P28360 PMFBP1-201ENST00000237353 3527 ntAPPRIS P2 TSL 1 (best) BASIC6.31□□□□□ -1.4
MSX1P28360 ARNT-201ENST00000354396 3538 ntAPPRIS ALT2 TSL 1 (best) BASIC6.31□□□□□ -1.4
MSX1P28360 FOXN2-203ENST00000616844 1414 ntTSL 5 BASIC6.31□□□□□ -1.4
MSX1P28360 PIGA-216ENST00000637296 2113 ntTSL 5 BASIC6.31□□□□□ -1.4
MSX1P28360 OR7D2-202ENST00000641288 3248 ntAPPRIS P1 BASIC6.31□□□□□ -1.4
MSX1P28360 ZNF630-202ENST00000409324 2455 ntAPPRIS P2 TSL 1 (best) BASIC6.31□□□□□ -1.4
MSX1P28360 HMGCS2-204ENST00000544913 1925 ntTSL 2 BASIC6.31□□□□□ -1.4
MSX1P28360 PBRM1-202ENST00000337303 4825 ntAPPRIS ALT1 TSL 1 (best) BASIC6.3□□□□□ -1.4
MSX1P28360 ZNF807-201ENST00000328088 1707 ntBASIC6.3□□□□□ -1.4
MSX1P28360 SP110-201ENST00000258381 2426 ntAPPRIS P4 TSL 2 BASIC6.3□□□□□ -1.4
MSX1P28360 ACOT13-201ENST00000230048 4047 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
MSX1P28360 CCDC82-202ENST00000423339 1878 ntAPPRIS P2 TSL 1 (best) BASIC6.3□□□□□ -1.4
MSX1P28360 AC004972.1-201ENST00000623934 2209 ntBASIC6.3□□□□□ -1.4
MSX1P28360 LINC01684-203ENST00000453784 2908 ntTSL 2 BASIC6.3□□□□□ -1.4
MSX1P28360 AC007938.1-201ENST00000562524 2902 ntBASIC6.3□□□□□ -1.4
MSX1P28360 DGKB-202ENST00000402815 5595 ntAPPRIS ALT1 TSL 5 BASIC6.3□□□□□ -1.4
MSX1P28360 PRND-201ENST00000305817 3980 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
MSX1P28360 CACNB4-219ENST00000636108 1698 ntTSL 5 BASIC6.3□□□□□ -1.4
MSX1P28360 XPO1-202ENST00000404992 4105 ntAPPRIS P1 TSL 2 BASIC6.3□□□□□ -1.4
MSX1P28360 CLCN3-211ENST00000613795 5874 ntTSL 5 BASIC6.3□□□□□ -1.4
MSX1P28360 TSHZ2-202ENST00000371497 12187 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
MSX1P28360 KLHL5-204ENST00000504108 2690 ntTSL 2 BASIC6.3□□□□□ -1.4
MSX1P28360 SPATA31C1-201ENST00000420021 3895 ntBASIC6.3□□□□□ -1.4
MSX1P28360 CYP2C8-212ENST00000623108 1962 ntTSL 2 BASIC6.3□□□□□ -1.4
MSX1P28360 ZBTB8OS-201ENST00000341885 312 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
MSX1P28360 Y_RNA.5-201ENST00000362334 102 ntBASIC6.3□□□□□ -1.4
MSX1P28360 Y_RNA.367-201ENST00000365544 101 ntBASIC6.3□□□□□ -1.4
MSX1P28360 SET-203ENST00000372688 801 ntTSL 2 BASIC6.3□□□□□ -1.4
MSX1P28360 SNORD94-201ENST00000386037 137 ntBASIC6.3□□□□□ -1.4
MSX1P28360 FABP6-202ENST00000402432 572 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
MSX1P28360 AL359382.1-201ENST00000417838 426 ntTSL 5 BASIC6.3□□□□□ -1.4
MSX1P28360 ARL5AP1-201ENST00000418991 388 ntBASIC6.3□□□□□ -1.4
MSX1P28360 AL157378.1-201ENST00000424506 265 ntTSL 5 BASIC6.3□□□□□ -1.4
MSX1P28360 AL138733.2-201ENST00000431947 804 ntTSL 5 BASIC6.3□□□□□ -1.4
MSX1P28360 FABP5P14-201ENST00000437273 393 ntBASIC6.3□□□□□ -1.4
MSX1P28360 AC104058.1-201ENST00000448028 297 ntBASIC6.3□□□□□ -1.4
MSX1P28360 AL445466.1-201ENST00000448432 357 ntBASIC6.3□□□□□ -1.4
MSX1P28360 AF015262.1-201ENST00000455028 698 ntTSL 3 BASIC6.3□□□□□ -1.4
MSX1P28360 UBFD1P1-201ENST00000473259 814 ntBASIC6.3□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 77.5 ms