Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 CENPE-208ENST00000611174 8260 ntTSL 5 BASIC4.86□□□□□ -1.63
VPS28Q9UK41 BBX-206ENST00000415149 8930 ntAPPRIS P3 TSL 1 (best) BASIC4.86□□□□□ -1.63
VPS28Q9UK41 MYO9A-209ENST00000564571 8111 ntAPPRIS ALT2 TSL 1 (best) BASIC4.86□□□□□ -1.63
VPS28Q9UK41 MSTN-201ENST00000260950 2822 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
VPS28Q9UK41 LINC02516-201ENST00000563724 1771 ntTSL 2 BASIC4.86□□□□□ -1.63
VPS28Q9UK41 MAP3K20-202ENST00000375213 3741 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
VPS28Q9UK41 GTDC1-206ENST00000409214 2954 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
VPS28Q9UK41 AC008549.2-201ENST00000333482 706 ntBASIC4.85□□□□□ -1.63
VPS28Q9UK41 RN7SKP115-201ENST00000363177 317 ntBASIC4.85□□□□□ -1.63
VPS28Q9UK41 AL592291.1-201ENST00000403830 352 ntBASIC4.85□□□□□ -1.63
VPS28Q9UK41 STAT4-203ENST00000409995 709 ntTSL 5 BASIC4.85□□□□□ -1.63
VPS28Q9UK41 AL596247.1-201ENST00000416076 442 ntTSL 3 BASIC4.85□□□□□ -1.63
VPS28Q9UK41 AC012506.4-201ENST00000421563 541 ntTSL 4 BASIC4.85□□□□□ -1.63
VPS28Q9UK41 RGS17P1-201ENST00000423358 553 ntBASIC4.85□□□□□ -1.63
VPS28Q9UK41 RAB3GAP1-202ENST00000425393 1139 ntTSL 2 BASIC4.85□□□□□ -1.63
VPS28Q9UK41 AL645634.2-201ENST00000431956 411 ntTSL 3 BASIC4.85□□□□□ -1.63
VPS28Q9UK41 AC009226.1-201ENST00000432413 539 ntTSL 3 BASIC4.85□□□□□ -1.63
VPS28Q9UK41 ZBTB40-IT1-201ENST00000438551 273 ntTSL 3 BASIC4.85□□□□□ -1.63
VPS28Q9UK41 HMGB3P9-201ENST00000441799 583 ntBASIC4.85□□□□□ -1.63
VPS28Q9UK41 AC092625.1-201ENST00000442706 393 ntTSL 3 BASIC4.85□□□□□ -1.63
VPS28Q9UK41 AC122136.1-201ENST00000443971 478 ntTSL 3 BASIC4.85□□□□□ -1.63
VPS28Q9UK41 RPL36AP15-201ENST00000444514 266 ntBASIC4.85□□□□□ -1.63
VPS28Q9UK41 AC233982.1-201ENST00000451247 436 ntBASIC4.85□□□□□ -1.63
VPS28Q9UK41 AC079168.2-201ENST00000453977 416 ntBASIC4.85□□□□□ -1.63
VPS28Q9UK41 AC093801.2-201ENST00000503966 1050 ntBASIC4.85□□□□□ -1.63
VPS28Q9UK41 INPP4B-206ENST00000506217 673 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
VPS28Q9UK41 MTATP6P22-201ENST00000507369 598 ntBASIC4.85□□□□□ -1.63
VPS28Q9UK41 LINC01088-205ENST00000509088 756 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
VPS28Q9UK41 RN7SKP82-201ENST00000516786 223 ntBASIC4.85□□□□□ -1.63
VPS28Q9UK41 RN7SKP96-201ENST00000516948 297 ntBASIC4.85□□□□□ -1.63
VPS28Q9UK41 IGHVIII-2-1-201ENST00000518843 291 ntBASIC4.85□□□□□ -1.63
VPS28Q9UK41 AC091564.3-201ENST00000527398 429 ntTSL 3 BASIC4.85□□□□□ -1.63
VPS28Q9UK41 AC010197.1-201ENST00000541860 578 ntTSL 4 BASIC4.85□□□□□ -1.63
VPS28Q9UK41 AL110118.1-201ENST00000553543 400 ntBASIC4.85□□□□□ -1.63
VPS28Q9UK41 SERPINE4P-201ENST00000554978 281 ntBASIC4.85□□□□□ -1.63
VPS28Q9UK41 CMC2-208ENST00000564249 890 ntAPPRIS P1 TSL 5 BASIC4.85□□□□□ -1.63
VPS28Q9UK41 C1QBP-206ENST00000574444 901 ntTSL 3 BASIC4.85□□□□□ -1.63
VPS28Q9UK41 RN7SL52P-201ENST00000584271 284 ntBASIC4.85□□□□□ -1.63
VPS28Q9UK41 INTS6-AS1-210ENST00000595424 301 ntTSL 5 BASIC4.85□□□□□ -1.63
VPS28Q9UK41 CERS6-AS1-204ENST00000599361 536 ntTSL 4 BASIC4.85□□□□□ -1.63
VPS28Q9UK41 AL356056.1-205ENST00000608904 651 ntTSL 5 BASIC4.85□□□□□ -1.63
VPS28Q9UK41 AL353726.1-201ENST00000614041 1000 ntBASIC4.85□□□□□ -1.63
VPS28Q9UK41 RN7SL722P-201ENST00000617780 284 ntBASIC4.85□□□□□ -1.63
VPS28Q9UK41 RN7SL565P-201ENST00000618246 284 ntBASIC4.85□□□□□ -1.63
VPS28Q9UK41 AC022079.2-201ENST00000619739 566 ntBASIC4.85□□□□□ -1.63
VPS28Q9UK41 AL596275.2-204ENST00000641628 552 ntBASIC4.85□□□□□ -1.63
VPS28Q9UK41 AL596275.2-206ENST00000641957 626 ntBASIC4.85□□□□□ -1.63
VPS28Q9UK41 B3GNT5-201ENST00000326505 4123 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
VPS28Q9UK41 PCDH11X-207ENST00000406881 4156 ntAPPRIS ALT2 TSL 1 (best) BASIC4.85□□□□□ -1.63
VPS28Q9UK41 PIGN-242ENST00000640145 4505 ntAPPRIS P1 TSL 5 BASIC4.85□□□□□ -1.63
VPS28Q9UK41 PAN3-202ENST00000399613 4940 ntAPPRIS ALT2 TSL 5 BASIC4.85□□□□□ -1.63
VPS28Q9UK41 TPTE2-205ENST00000400230 1793 ntAPPRIS P1 TSL 5 BASIC4.85□□□□□ -1.63
VPS28Q9UK41 TAX1BP1-202ENST00000396319 2892 ntAPPRIS P3 TSL 1 (best) BASIC4.85□□□□□ -1.63
VPS28Q9UK41 PPP1R9A-201ENST00000289495 3983 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
VPS28Q9UK41 EMSY-204ENST00000524490 4015 ntTSL 2 BASIC4.85□□□□□ -1.63
VPS28Q9UK41 DCDC1-211ENST00000597505 5352 ntAPPRIS ALT2 TSL 5 BASIC4.84□□□□□ -1.63
VPS28Q9UK41 ZNF28-204ENST00000457749 4556 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
VPS28Q9UK41 MAPK10-236ENST00000638313 3971 ntTSL 5 BASIC4.84□□□□□ -1.63
VPS28Q9UK41 TLK1-212ENST00000521943 2605 ntTSL 2 BASIC4.84□□□□□ -1.63
VPS28Q9UK41 PTPN12-206ENST00000435495 2526 ntTSL 2 BASIC4.84□□□□□ -1.63
VPS28Q9UK41 XPOTP1-201ENST00000443317 2398 ntBASIC4.84□□□□□ -1.63
VPS28Q9UK41 TRIM69-201ENST00000329464 1901 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
VPS28Q9UK41 CFHR1-202ENST00000367424 1070 ntTSL 5 BASIC4.84□□□□□ -1.63
VPS28Q9UK41 RNU6-1257P-201ENST00000384625 110 ntBASIC4.84□□□□□ -1.63
VPS28Q9UK41 MIR192-201ENST00000384915 110 ntBASIC4.84□□□□□ -1.63
VPS28Q9UK41 PRRC2CP1-201ENST00000404428 159 ntBASIC4.84□□□□□ -1.63
VPS28Q9UK41 RN7SKP106-201ENST00000410832 272 ntBASIC4.84□□□□□ -1.63
VPS28Q9UK41 RPL26P29-201ENST00000415623 438 ntBASIC4.84□□□□□ -1.63
VPS28Q9UK41 AL451070.1-201ENST00000430143 439 ntTSL 5 BASIC4.84□□□□□ -1.63
VPS28Q9UK41 KCND3-IT1-201ENST00000439736 376 ntTSL 3 BASIC4.84□□□□□ -1.63
VPS28Q9UK41 AL365271.1-201ENST00000448909 603 ntTSL 3 BASIC4.84□□□□□ -1.63
VPS28Q9UK41 IMMP2L-205ENST00000450877 761 ntTSL 2 BASIC4.84□□□□□ -1.63
VPS28Q9UK41 AC010326.1-201ENST00000462726 602 ntBASIC4.84□□□□□ -1.63
VPS28Q9UK41 RN7SL354P-201ENST00000469282 294 ntBASIC4.84□□□□□ -1.63
VPS28Q9UK41 RPL12P20-201ENST00000475538 479 ntBASIC4.84□□□□□ -1.63
VPS28Q9UK41 AC126121.1-201ENST00000482313 553 ntBASIC4.84□□□□□ -1.63
VPS28Q9UK41 LINC02325-201ENST00000499910 1115 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
VPS28Q9UK41 PTPN20-213ENST00000502705 854 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
VPS28Q9UK41 AC026414.1-201ENST00000504046 698 ntBASIC4.84□□□□□ -1.63
VPS28Q9UK41 AC110792.2-201ENST00000510278 224 ntBASIC4.84□□□□□ -1.63
VPS28Q9UK41 AF186190.1-201ENST00000517470 480 ntBASIC4.84□□□□□ -1.63
VPS28Q9UK41 AP003400.1-201ENST00000528319 231 ntTSL 5 BASIC4.84□□□□□ -1.63
VPS28Q9UK41 AP001775.2-201ENST00000531710 334 ntTSL 2 BASIC4.84□□□□□ -1.63
VPS28Q9UK41 RAD51AP1-213ENST00000544927 787 ntTSL 4 BASIC4.84□□□□□ -1.63
VPS28Q9UK41 AL929601.2-201ENST00000549951 381 ntTSL 4 BASIC4.84□□□□□ -1.63
VPS28Q9UK41 CYP2C60P-201ENST00000566088 139 ntBASIC4.84□□□□□ -1.63
VPS28Q9UK41 AC023825.1-201ENST00000566704 1030 ntBASIC4.84□□□□□ -1.63
VPS28Q9UK41 AC090666.1-201ENST00000578241 445 ntBASIC4.84□□□□□ -1.63
VPS28Q9UK41 MIR4330-201ENST00000579077 105 ntBASIC4.84□□□□□ -1.63
VPS28Q9UK41 AC005899.1-201ENST00000584125 563 ntTSL 5 BASIC4.84□□□□□ -1.63
VPS28Q9UK41 AC097467.3-207ENST00000602249 725 ntTSL 5 BASIC4.84□□□□□ -1.63
VPS28Q9UK41 IGKV1OR2-9-201ENST00000603957 287 ntBASIC4.84□□□□□ -1.63
VPS28Q9UK41 IGKV1OR2-11-201ENST00000604120 287 ntBASIC4.84□□□□□ -1.63
VPS28Q9UK41 AC009948.4-201ENST00000604692 675 ntBASIC4.84□□□□□ -1.63
VPS28Q9UK41 AC099785.1-201ENST00000605697 437 ntBASIC4.84□□□□□ -1.63
VPS28Q9UK41 AC013468.1-201ENST00000608680 598 ntBASIC4.84□□□□□ -1.63
VPS28Q9UK41 AC124016.2-201ENST00000610058 665 ntBASIC4.84□□□□□ -1.63
VPS28Q9UK41 AC000123.2-201ENST00000623124 461 ntBASIC4.84□□□□□ -1.63
VPS28Q9UK41 AP006248.2-201ENST00000623309 592 ntBASIC4.84□□□□□ -1.63
VPS28Q9UK41 AL109659.3-201ENST00000624985 950 ntBASIC4.84□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 124.7 ms