Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 SCN11A-202ENST00000444237 5729 ntAPPRIS ALT2 TSL 5 BASIC6.34□□□□□ -1.4
CUX1P39880 LINC01222-201ENST00000427439 1785 ntTSL 2 BASIC6.34□□□□□ -1.4
CUX1P39880 MFSD8-236ENST00000641509 4050 ntBASIC6.34□□□□□ -1.4
CUX1P39880 TLR3-201ENST00000296795 6015 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
CUX1P39880 KCNH7-205ENST00000621889 1893 ntTSL 5 BASIC6.33□□□□□ -1.4
CUX1P39880 DBIP2-201ENST00000419076 262 ntBASIC6.33□□□□□ -1.4
CUX1P39880 SETD6P1-201ENST00000444575 317 ntBASIC6.33□□□□□ -1.4
CUX1P39880 OR52Y1P-201ENST00000452418 828 ntBASIC6.33□□□□□ -1.4
CUX1P39880 FOPNL-204ENST00000573396 735 ntTSL 3 BASIC6.33□□□□□ -1.4
CUX1P39880 WDR7-OT1-201ENST00000592032 565 ntTSL 4 BASIC6.33□□□□□ -1.4
CUX1P39880 AC026979.4-201ENST00000606555 645 ntBASIC6.33□□□□□ -1.4
CUX1P39880 CASP1-210ENST00000528974 1402 ntTSL 2 BASIC6.33□□□□□ -1.4
CUX1P39880 BRCA1-203ENST00000357654 7094 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
CUX1P39880 MUC12-206ENST00000536621 16321 ntAPPRIS P2 TSL 5 BASIC6.33□□□□□ -1.4
CUX1P39880 LRRN3-203ENST00000422987 3513 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
CUX1P39880 MMRN1-201ENST00000264790 4967 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
CUX1P39880 ZNF81-202ENST00000338637 7859 ntAPPRIS P1 TSL 3 BASIC6.32□□□□□ -1.4
CUX1P39880 DAZ4-202ENST00000382314 3910 ntAPPRIS ALT2 TSL 5 BASIC6.32□□□□□ -1.4
CUX1P39880 RTTN-201ENST00000255674 6960 ntTSL 5 BASIC6.32□□□□□ -1.4
CUX1P39880 OR5A1-202ENST00000641045 8612 ntAPPRIS P1 BASIC6.32□□□□□ -1.4
CUX1P39880 KAT6B-201ENST00000287239 8287 ntAPPRIS P3 TSL 1 (best) BASIC6.32□□□□□ -1.4
CUX1P39880 AL355989.1-202ENST00000419406 408 ntTSL 3 BASIC6.32□□□□□ -1.4
CUX1P39880 AL391219.1-201ENST00000422570 483 ntBASIC6.32□□□□□ -1.4
CUX1P39880 MAPRE1P3-201ENST00000435438 796 ntBASIC6.32□□□□□ -1.4
CUX1P39880 AL451129.1-201ENST00000437471 285 ntTSL 3 BASIC6.32□□□□□ -1.4
CUX1P39880 SNORA71B-202ENST00000439232 272 ntBASIC6.32□□□□□ -1.4
CUX1P39880 AL157359.2-201ENST00000440372 784 ntTSL 3 BASIC6.32□□□□□ -1.4
CUX1P39880 TIFA-202ENST00000500655 769 ntAPPRIS P1 TSL 3 BASIC6.32□□□□□ -1.4
CUX1P39880 SNORA70.17-201ENST00000516449 133 ntBASIC6.32□□□□□ -1.4
CUX1P39880 RAD21-204ENST00000518055 896 ntTSL 2 BASIC6.32□□□□□ -1.4
CUX1P39880 MFAP5-212ENST00000543369 972 ntTSL 3 BASIC6.32□□□□□ -1.4
CUX1P39880 ZPLD1-202ENST00000466937 1531 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
CUX1P39880 SLCO1C1-201ENST00000266509 3365 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
CUX1P39880 PREPL-205ENST00000409411 4725 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
CUX1P39880 SCN3A-202ENST00000360093 9123 ntAPPRIS ALT1 TSL 5 BASIC6.32□□□□□ -1.4
CUX1P39880 UBR1-201ENST00000290650 7761 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
CUX1P39880 KCNJ6-201ENST00000609713 19645 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
CUX1P39880 MECOM-201ENST00000264674 4900 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
CUX1P39880 MTUS1-201ENST00000262102 6160 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
CUX1P39880 TRAT1-201ENST00000295756 1919 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
CUX1P39880 ELAVL4-203ENST00000371821 3349 ntTSL 5 BASIC6.31□□□□□ -1.4
CUX1P39880 Y_RNA.111-201ENST00000363248 100 ntBASIC6.31□□□□□ -1.4
CUX1P39880 AC017083.1-201ENST00000428093 483 ntBASIC6.31□□□□□ -1.4
CUX1P39880 AL138916.1-201ENST00000436295 455 ntTSL 3 BASIC6.31□□□□□ -1.4
CUX1P39880 AL121718.1-201ENST00000449463 387 ntTSL 3 BASIC6.31□□□□□ -1.4
CUX1P39880 AC005871.1-201ENST00000450247 475 ntTSL 3 BASIC6.31□□□□□ -1.4
CUX1P39880 EIF4A1P11-201ENST00000451239 222 ntBASIC6.31□□□□□ -1.4
CUX1P39880 AC090589.1-201ENST00000473109 362 ntBASIC6.31□□□□□ -1.4
CUX1P39880 AC018816.1-205ENST00000489771 509 ntTSL 2 BASIC6.31□□□□□ -1.4
CUX1P39880 AC016550.3-201ENST00000515706 767 ntBASIC6.31□□□□□ -1.4
CUX1P39880 AC083923.2-203ENST00000520512 372 ntTSL 3 BASIC6.31□□□□□ -1.4
CUX1P39880 OR4A12P-201ENST00000530847 918 ntBASIC6.31□□□□□ -1.4
CUX1P39880 AC012493.2-201ENST00000595083 291 ntBASIC6.31□□□□□ -1.4
CUX1P39880 ZNF345-214ENST00000612719 2938 ntAPPRIS P1 TSL 4 BASIC6.31□□□□□ -1.4
CUX1P39880 PLS1-211ENST00000497002 2258 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
CUX1P39880 PTP4A1-205ENST00000626021 2203 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
CUX1P39880 KCNC4-201ENST00000369787 18750 ntAPPRIS P3 TSL 1 (best) BASIC6.31□□□□□ -1.4
CUX1P39880 OR6A2-202ENST00000641196 4295 ntAPPRIS P1 BASIC6.31□□□□□ -1.4
CUX1P39880 NSD1-204ENST00000439151 12892 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
CUX1P39880 CDY11P-201ENST00000447168 1651 ntBASIC6.31□□□□□ -1.4
CUX1P39880 FAR2-203ENST00000547116 1787 ntTSL 2 BASIC6.31□□□□□ -1.4
CUX1P39880 MAPK10-235ENST00000638225 8941 ntAPPRIS P2 TSL 1 (best) BASIC6.31□□□□□ -1.4
CUX1P39880 KMO-202ENST00000366557 4888 ntAPPRIS ALT2 TSL 5 BASIC6.3□□□□□ -1.4
CUX1P39880 RPL9-201ENST00000295955 750 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
CUX1P39880 LIX1L-AS1-201ENST00000366105 377 ntTSL 5 BASIC6.3□□□□□ -1.4
CUX1P39880 CYCSP35-201ENST00000451978 304 ntBASIC6.3□□□□□ -1.4
CUX1P39880 AC026784.1-201ENST00000507986 352 ntBASIC6.3□□□□□ -1.4
CUX1P39880 LINC02479-201ENST00000508942 630 ntTSL 3 BASIC6.3□□□□□ -1.4
CUX1P39880 IGKV2-38-201ENST00000517443 247 ntBASIC6.3□□□□□ -1.4
CUX1P39880 AC069240.1-201ENST00000548774 375 ntBASIC6.3□□□□□ -1.4
CUX1P39880 AL354760.1-201ENST00000608357 643 ntBASIC6.3□□□□□ -1.4
CUX1P39880 ARHGAP28-205ENST00000531294 2171 ntAPPRIS ALT2 TSL 5 BASIC6.3□□□□□ -1.4
CUX1P39880 STAG2-205ENST00000371160 6045 ntAPPRIS P3 TSL 1 (best) BASIC6.3□□□□□ -1.4
CUX1P39880 XRN1-201ENST00000264951 10143 ntAPPRIS P3 TSL 1 (best) BASIC6.3□□□□□ -1.4
CUX1P39880 AL122016.1-201ENST00000403365 367 ntBASIC6.3□□□□□ -1.4
CUX1P39880 RNU6ATAC10P-201ENST00000408635 111 ntBASIC6.3□□□□□ -1.4
CUX1P39880 SETP9-201ENST00000423837 832 ntBASIC6.3□□□□□ -1.4
CUX1P39880 SNORD105B-201ENST00000458770 79 ntBASIC6.3□□□□□ -1.4
CUX1P39880 AC097103.2-204ENST00000510068 569 ntTSL 3 BASIC6.3□□□□□ -1.4
CUX1P39880 AC087341.1-201ENST00000521490 491 ntTSL 2 BASIC6.3□□□□□ -1.4
CUX1P39880 AC089983.1-201ENST00000549807 701 ntTSL 3 BASIC6.3□□□□□ -1.4
CUX1P39880 TIMM9-206ENST00000555593 796 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
CUX1P39880 ARF4-206ENST00000489843 1360 ntTSL 3 BASIC6.3□□□□□ -1.4
CUX1P39880 AC110760.2-201ENST00000508031 2546 ntTSL 2 BASIC6.29□□□□□ -1.4
CUX1P39880 CDC14A-206ENST00000635056 2056 ntTSL 2 BASIC6.29□□□□□ -1.4
CUX1P39880 STON1-GTF2A1L-201ENST00000394751 3534 ntTSL 2 BASIC6.29□□□□□ -1.4
CUX1P39880 TET2-204ENST00000413648 4973 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
CUX1P39880 MACC1-205ENST00000589011 2686 ntAPPRIS P1 TSL 5 BASIC6.29□□□□□ -1.4
CUX1P39880 PCDH15-217ENST00000414778 9234 ntAPPRIS ALT2 TSL 5 BASIC6.29□□□□□ -1.4
CUX1P39880 PCDH15-227ENST00000614895 9249 ntAPPRIS ALT2 TSL 5 BASIC6.29□□□□□ -1.4
CUX1P39880 CSNK1G3-203ENST00000361991 2424 ntAPPRIS P3 TSL 1 (best) BASIC6.29□□□□□ -1.4
CUX1P39880 EIF2AK2-201ENST00000233057 10042 ntAPPRIS P1 TSL 2 BASIC6.29□□□□□ -1.4
CUX1P39880 ZNF704-201ENST00000327835 14386 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
CUX1P39880 FTX-210ENST00000603037 8347 ntTSL 5 BASIC6.29□□□□□ -1.4
CUX1P39880 AL365440.1-201ENST00000436135 2167 ntBASIC6.29□□□□□ -1.4
CUX1P39880 RBMS1-203ENST00000409075 1550 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
CUX1P39880 PPP1R9A-207ENST00000433881 9928 ntAPPRIS P1 TSL 5 BASIC6.29□□□□□ -1.4
CUX1P39880 CCSER1-201ENST00000432775 3927 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
CUX1P39880 AC073063.1-201ENST00000434352 607 ntBASIC6.29□□□□□ -1.4
CUX1P39880 RPS29P2-201ENST00000479278 136 ntBASIC6.29□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 111.9 ms