Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 TRAV23DV6-201ENST00000390451 409 ntAPPRIS P1 BASIC5.62□□□□□ -1.51
SMARCA1P28370 RN7SKP100-201ENST00000411258 284 ntBASIC5.62□□□□□ -1.51
SMARCA1P28370 AL031674.1-202ENST00000413070 465 ntTSL 3 BASIC5.62□□□□□ -1.51
SMARCA1P28370 TMBIM7P-201ENST00000418074 855 ntBASIC5.62□□□□□ -1.51
SMARCA1P28370 LINC00993-201ENST00000420453 540 ntBASIC5.62□□□□□ -1.51
SMARCA1P28370 AL589946.1-201ENST00000421465 420 ntTSL 3 BASIC5.62□□□□□ -1.51
SMARCA1P28370 RPF2P1-201ENST00000424137 906 ntBASIC5.62□□□□□ -1.51
SMARCA1P28370 CDY14P-201ENST00000431260 1014 ntBASIC5.62□□□□□ -1.51
SMARCA1P28370 RPS24P8-201ENST00000431490 402 ntBASIC5.62□□□□□ -1.51
SMARCA1P28370 POU6F2-AS1-201ENST00000433519 381 ntTSL 3 BASIC5.62□□□□□ -1.51
SMARCA1P28370 CDY12P-201ENST00000440679 1015 ntBASIC5.62□□□□□ -1.51
SMARCA1P28370 CDY13P-201ENST00000445813 1015 ntBASIC5.62□□□□□ -1.51
SMARCA1P28370 CDY23P-201ENST00000451661 1014 ntBASIC5.62□□□□□ -1.51
SMARCA1P28370 KIAA0895-209ENST00000453212 956 ntTSL 3 BASIC5.62□□□□□ -1.51
SMARCA1P28370 RPL10P17-201ENST00000453852 316 ntBASIC5.62□□□□□ -1.51
SMARCA1P28370 AL023581.2-201ENST00000454588 552 ntTSL 2 BASIC5.62□□□□□ -1.51
SMARCA1P28370 NECAP1P2-201ENST00000455668 727 ntBASIC5.62□□□□□ -1.51
SMARCA1P28370 PTPRG-AS1-202ENST00000466893 823 ntTSL 4 BASIC5.62□□□□□ -1.51
SMARCA1P28370 AC091959.2-201ENST00000477363 321 ntBASIC5.62□□□□□ -1.51
SMARCA1P28370 AC084024.2-201ENST00000503480 791 ntBASIC5.62□□□□□ -1.51
SMARCA1P28370 SCARNA22-201ENST00000503991 125 ntBASIC5.62□□□□□ -1.51
SMARCA1P28370 F11-AS1-201ENST00000505103 1178 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
SMARCA1P28370 AC093903.1-201ENST00000507220 405 ntTSL 3 BASIC5.62□□□□□ -1.51
SMARCA1P28370 RNU5A-4P-201ENST00000516588 111 ntBASIC5.62□□□□□ -1.51
SMARCA1P28370 AC018861.2-201ENST00000518078 513 ntTSL 2 BASIC5.62□□□□□ -1.51
SMARCA1P28370 AC093331.2-201ENST00000520459 677 ntTSL 3 BASIC5.62□□□□□ -1.51
SMARCA1P28370 SDHAF2-205ENST00000537782 559 ntTSL 4 BASIC5.62□□□□□ -1.51
SMARCA1P28370 RN7SL802P-201ENST00000577858 299 ntBASIC5.62□□□□□ -1.51
SMARCA1P28370 AL121989.1-201ENST00000585888 746 ntTSL 3 BASIC5.62□□□□□ -1.51
SMARCA1P28370 AC022726.1-201ENST00000587475 207 ntBASIC5.62□□□□□ -1.51
SMARCA1P28370 NAA60-237ENST00000615865 326 ntTSL 5 BASIC5.62□□□□□ -1.51
SMARCA1P28370 AL022401.1-201ENST00000619498 108 ntBASIC5.62□□□□□ -1.51
SMARCA1P28370 AC243829.4-201ENST00000620056 701 ntTSL 5 BASIC5.62□□□□□ -1.51
SMARCA1P28370 KBTBD2-208ENST00000621876 1196 ntTSL 5 BASIC5.62□□□□□ -1.51
SMARCA1P28370 AC109454.4-201ENST00000623411 649 ntBASIC5.62□□□□□ -1.51
SMARCA1P28370 AC004943.3-201ENST00000624116 600 ntBASIC5.62□□□□□ -1.51
SMARCA1P28370 MIR1322-201ENST00000638013 71 ntBASIC5.62□□□□□ -1.51
SMARCA1P28370 AC234781.1-202ENST00000412436 1329 ntTSL 5 BASIC5.62□□□□□ -1.51
SMARCA1P28370 ZNF652P1-201ENST00000442420 1309 ntBASIC5.62□□□□□ -1.51
SMARCA1P28370 AC139713.2-209ENST00000509873 1303 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
SMARCA1P28370 EIF2AK3-203ENST00000419748 4222 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
SMARCA1P28370 CCDC54-201ENST00000261058 1444 ntAPPRIS P1 BASIC5.62□□□□□ -1.51
SMARCA1P28370 AC104454.1-201ENST00000421341 1401 ntBASIC5.62□□□□□ -1.51
SMARCA1P28370 AC073429.2-201ENST00000569694 1444 ntBASIC5.62□□□□□ -1.51
SMARCA1P28370 DHX9P1-201ENST00000436565 3076 ntBASIC5.62□□□□□ -1.51
SMARCA1P28370 SAMMSON-226ENST00000642089 1582 ntBASIC5.62□□□□□ -1.51
SMARCA1P28370 C8orf4-201ENST00000315792 1854 ntAPPRIS P1 BASIC5.62□□□□□ -1.51
SMARCA1P28370 CYP4Z1-201ENST00000334194 1906 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
SMARCA1P28370 ARHGAP42P1-201ENST00000507474 1976 ntBASIC5.62□□□□□ -1.51
SMARCA1P28370 LINC01619-207ENST00000551843 2205 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
SMARCA1P28370 PCDH9-201ENST00000377861 28227 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
SMARCA1P28370 LIMA1-203ENST00000547825 3920 ntAPPRIS ALT2 TSL 1 (best) BASIC5.61□□□□□ -1.51
SMARCA1P28370 MED13-201ENST00000397786 10465 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
SMARCA1P28370 COMMD8-201ENST00000381571 1469 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
SMARCA1P28370 AL590867.1-201ENST00000392385 1212 ntTSL 2 BASIC5.61□□□□□ -1.51
SMARCA1P28370 NPM1P40-201ENST00000412758 733 ntBASIC5.61□□□□□ -1.51
SMARCA1P28370 AL592078.1-201ENST00000421866 321 ntTSL 3 BASIC5.61□□□□□ -1.51
SMARCA1P28370 LINC00458-202ENST00000427299 1030 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
SMARCA1P28370 AL449043.1-202ENST00000427318 582 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
SMARCA1P28370 USP9YP9-201ENST00000429406 715 ntBASIC5.61□□□□□ -1.51
SMARCA1P28370 NRBF2P3-201ENST00000432731 865 ntBASIC5.61□□□□□ -1.51
SMARCA1P28370 AL451139.1-201ENST00000434718 346 ntBASIC5.61□□□□□ -1.51
SMARCA1P28370 DIAPH3-AS1-203ENST00000435636 467 ntTSL 2 BASIC5.61□□□□□ -1.51
SMARCA1P28370 AC009299.3-203ENST00000435692 1096 ntTSL 5 BASIC5.61□□□□□ -1.51
SMARCA1P28370 HSD52-202ENST00000436225 772 ntTSL 3 BASIC5.61□□□□□ -1.51
SMARCA1P28370 COX7BP2-201ENST00000437976 242 ntBASIC5.61□□□□□ -1.51
SMARCA1P28370 NSRP1P1-201ENST00000444067 1693 ntBASIC5.61□□□□□ -1.51
SMARCA1P28370 AF127577.5-201ENST00000449746 446 ntTSL 3 BASIC5.61□□□□□ -1.51
SMARCA1P28370 AC234781.3-201ENST00000452540 973 ntBASIC5.61□□□□□ -1.51
SMARCA1P28370 DNAJC19P8-201ENST00000452887 259 ntBASIC5.61□□□□□ -1.51
SMARCA1P28370 AC018742.1-202ENST00000457901 504 ntTSL 3 BASIC5.61□□□□□ -1.51
SMARCA1P28370 AP000942.1-201ENST00000463969 747 ntBASIC5.61□□□□□ -1.51
SMARCA1P28370 C1orf185-202ENST00000467127 747 ntAPPRIS ALT2 TSL 3 BASIC5.61□□□□□ -1.51
SMARCA1P28370 APOA2-207ENST00000470459 416 ntTSL 5 BASIC5.61□□□□□ -1.51
SMARCA1P28370 AL136537.1-202ENST00000501725 430 ntTSL 3 BASIC5.61□□□□□ -1.51
SMARCA1P28370 AC113347.3-201ENST00000509113 148 ntBASIC5.61□□□□□ -1.51
SMARCA1P28370 AC104619.2-201ENST00000514293 646 ntTSL 3 BASIC5.61□□□□□ -1.51
SMARCA1P28370 AC005740.3-201ENST00000520882 344 ntTSL 2 BASIC5.61□□□□□ -1.51
SMARCA1P28370 PKIA-AS1-203ENST00000522807 692 ntTSL 3 BASIC5.61□□□□□ -1.51
SMARCA1P28370 AC103681.1-202ENST00000534342 449 ntTSL 3 BASIC5.61□□□□□ -1.51
SMARCA1P28370 AC005868.1-201ENST00000536421 331 ntBASIC5.61□□□□□ -1.51
SMARCA1P28370 AC025034.1-201ENST00000552778 1711 ntTSL 3 BASIC5.61□□□□□ -1.51
SMARCA1P28370 AL133370.1-201ENST00000554679 537 ntTSL 3 BASIC5.61□□□□□ -1.51
SMARCA1P28370 AL049839.1-201ENST00000556151 657 ntBASIC5.61□□□□□ -1.51
SMARCA1P28370 AC012379.1-201ENST00000558304 406 ntTSL 3 BASIC5.61□□□□□ -1.51
SMARCA1P28370 AC138907.2-201ENST00000561479 866 ntTSL 3 BASIC5.61□□□□□ -1.51
SMARCA1P28370 AC145350.4-201ENST00000562827 866 ntTSL 3 BASIC5.61□□□□□ -1.51
SMARCA1P28370 AC133485.5-201ENST00000563407 866 ntTSL 3 BASIC5.61□□□□□ -1.51
SMARCA1P28370 AC007599.2-201ENST00000573040 493 ntTSL 5 BASIC5.61□□□□□ -1.51
SMARCA1P28370 MIR5699-201ENST00000578903 90 ntBASIC5.61□□□□□ -1.51
SMARCA1P28370 LINC01255-206ENST00000591431 441 ntTSL 5 BASIC5.61□□□□□ -1.51
SMARCA1P28370 AP003392.5-201ENST00000607857 415 ntBASIC5.61□□□□□ -1.51
SMARCA1P28370 FAM25E-202ENST00000608562 189 ntBASIC5.61□□□□□ -1.51
SMARCA1P28370 AC004948.1-201ENST00000609858 672 ntBASIC5.61□□□□□ -1.51
SMARCA1P28370 AP000676.3-201ENST00000623299 569 ntBASIC5.61□□□□□ -1.51
SMARCA1P28370 AC096656.1-201ENST00000623826 1364 ntBASIC5.61□□□□□ -1.51
SMARCA1P28370 AL512506.2-201ENST00000624472 458 ntBASIC5.61□□□□□ -1.51
SMARCA1P28370 WISP3-211ENST00000639360 1026 ntTSL 5 BASIC5.61□□□□□ -1.51
SMARCA1P28370 DNA2-201ENST00000358410 4208 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
SMARCA1P28370 ATF7IP-214ENST00000540793 4142 ntAPPRIS P3 TSL 1 (best) BASIC5.61□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 105.8 ms