Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 SCN1A-201ENST00000303395 8533 ntAPPRIS ALT1 TSL 5 BASIC4.74□□□□□ -1.65
COL5A3P25940 RBMS1-203ENST00000409075 1550 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
COL5A3P25940 PARD3B-212ENST00000613457 7559 ntTSL 5 BASIC4.74□□□□□ -1.65
COL5A3P25940 SLCO1C1-201ENST00000266509 3365 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
COL5A3P25940 MBNL3-204ENST00000370853 2661 ntAPPRIS P4 TSL 1 (best) BASIC4.74□□□□□ -1.65
COL5A3P25940 DDX18P6-201ENST00000450119 1997 ntBASIC4.74□□□□□ -1.65
COL5A3P25940 RNU6-316P-201ENST00000391027 107 ntBASIC4.74□□□□□ -1.65
COL5A3P25940 LINC01445-201ENST00000426205 812 ntTSL 3 BASIC4.74□□□□□ -1.65
COL5A3P25940 DPY19L1P2-201ENST00000426647 915 ntBASIC4.74□□□□□ -1.65
COL5A3P25940 AL590302.1-201ENST00000431017 359 ntTSL 2 BASIC4.74□□□□□ -1.65
COL5A3P25940 LINC02013-201ENST00000438156 526 ntTSL 2 BASIC4.74□□□□□ -1.65
COL5A3P25940 AL035443.1-202ENST00000442841 586 ntTSL 2 BASIC4.74□□□□□ -1.65
COL5A3P25940 PTP4A2-203ENST00000470404 575 ntTSL 3 BASIC4.74□□□□□ -1.65
COL5A3P25940 RN7SL271P-201ENST00000487601 295 ntBASIC4.74□□□□□ -1.65
COL5A3P25940 LINC01957-201ENST00000506392 751 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
COL5A3P25940 AC026784.1-201ENST00000507986 352 ntBASIC4.74□□□□□ -1.65
COL5A3P25940 AC027807.1-201ENST00000559921 996 ntBASIC4.74□□□□□ -1.65
COL5A3P25940 AC103987.2-201ENST00000583436 417 ntTSL 2 BASIC4.74□□□□□ -1.65
COL5A3P25940 AP000255.1-201ENST00000610276 676 ntBASIC4.74□□□□□ -1.65
COL5A3P25940 AL356130.2-201ENST00000612554 404 ntTSL 3 BASIC4.74□□□□□ -1.65
COL5A3P25940 TTN-AS1-267ENST00000628826 662 ntTSL 5 BASIC4.74□□□□□ -1.65
COL5A3P25940 QSER1-201ENST00000399302 9335 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
COL5A3P25940 CSNK1G3-203ENST00000361991 2424 ntAPPRIS P3 TSL 1 (best) BASIC4.74□□□□□ -1.65
COL5A3P25940 SCN11A-202ENST00000444237 5729 ntAPPRIS ALT2 TSL 5 BASIC4.74□□□□□ -1.65
COL5A3P25940 ANK2-226ENST00000612754 6134 ntTSL 5 BASIC4.74□□□□□ -1.65
COL5A3P25940 IQCM-205ENST00000636414 1844 ntAPPRIS ALT2 TSL 5 BASIC4.74□□□□□ -1.65
COL5A3P25940 PLS1-211ENST00000497002 2258 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
COL5A3P25940 CAPS2-206ENST00000409799 1859 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
COL5A3P25940 OR2AG1-202ENST00000641258 6993 ntAPPRIS P1 BASIC4.73□□□□□ -1.65
COL5A3P25940 AC138409.2-201ENST00000514048 5001 ntTSL 5 BASIC4.73□□□□□ -1.65
COL5A3P25940 MGAT4A-204ENST00000414521 3709 ntTSL 2 BASIC4.73□□□□□ -1.65
COL5A3P25940 UBR1-201ENST00000290650 7761 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
COL5A3P25940 C1orf112-202ENST00000359326 4002 ntAPPRIS P3 TSL 1 (best) BASIC4.73□□□□□ -1.65
COL5A3P25940 SYF2-202ENST00000354361 926 ntTSL 2 BASIC4.73□□□□□ -1.65
COL5A3P25940 OR5V1-215ENST00000377154 1266 ntAPPRIS P1 BASIC4.73□□□□□ -1.65
COL5A3P25940 AL122016.1-201ENST00000403365 367 ntBASIC4.73□□□□□ -1.65
COL5A3P25940 AL355989.1-202ENST00000419406 408 ntTSL 3 BASIC4.73□□□□□ -1.65
COL5A3P25940 AC005019.1-201ENST00000436455 431 ntBASIC4.73□□□□□ -1.65
COL5A3P25940 MORF4L2P1-201ENST00000503761 858 ntBASIC4.73□□□□□ -1.65
COL5A3P25940 LINC02479-201ENST00000508942 630 ntTSL 3 BASIC4.73□□□□□ -1.65
COL5A3P25940 AC113192.5-201ENST00000528779 486 ntTSL 2 BASIC4.73□□□□□ -1.65
COL5A3P25940 AC006960.3-201ENST00000561845 705 ntBASIC4.73□□□□□ -1.65
COL5A3P25940 AC007066.2-202ENST00000566531 914 ntBASIC4.73□□□□□ -1.65
COL5A3P25940 AC011816.2-201ENST00000607089 556 ntBASIC4.73□□□□□ -1.65
COL5A3P25940 MIR8057-201ENST00000620957 69 ntBASIC4.73□□□□□ -1.65
COL5A3P25940 EXPH5-203ENST00000525344 6542 ntAPPRIS ALT2 TSL 1 (best) BASIC4.73□□□□□ -1.65
COL5A3P25940 MAPK10-253ENST00000641010 4072 ntBASIC4.73□□□□□ -1.65
COL5A3P25940 BX664718.1-201ENST00000439824 3224 ntTSL 2 BASIC4.73□□□□□ -1.65
COL5A3P25940 UNC80-203ENST00000439458 13562 ntAPPRIS P1 TSL 5 BASIC4.72□□□□□ -1.65
COL5A3P25940 PLCE1-202ENST00000371380 12024 ntAPPRIS P3 TSL 1 (best) BASIC4.72□□□□□ -1.65
COL5A3P25940 RNU4-35P-201ENST00000362588 141 ntBASIC4.72□□□□□ -1.65
COL5A3P25940 AKAP14-204ENST00000371431 977 ntAPPRIS P3 TSL 1 (best) BASIC4.72□□□□□ -1.65
COL5A3P25940 MIR634-201ENST00000385208 97 ntBASIC4.72□□□□□ -1.65
COL5A3P25940 AC005326.1-201ENST00000429197 123 ntBASIC4.72□□□□□ -1.65
COL5A3P25940 MAPRE1P3-201ENST00000435438 796 ntBASIC4.72□□□□□ -1.65
COL5A3P25940 LINC01923-201ENST00000443261 592 ntTSL 5 BASIC4.72□□□□□ -1.65
COL5A3P25940 CYCSP35-201ENST00000451978 304 ntBASIC4.72□□□□□ -1.65
COL5A3P25940 OR52Y1P-201ENST00000452418 828 ntBASIC4.72□□□□□ -1.65
COL5A3P25940 GMPSP1-201ENST00000514075 579 ntBASIC4.72□□□□□ -1.65
COL5A3P25940 RN7SKP57-201ENST00000517248 293 ntBASIC4.72□□□□□ -1.65
COL5A3P25940 IGKV2-38-201ENST00000517443 247 ntBASIC4.72□□□□□ -1.65
COL5A3P25940 AC103726.1-201ENST00000520785 474 ntTSL 2 BASIC4.72□□□□□ -1.65
COL5A3P25940 AC099520.2-201ENST00000523745 567 ntTSL 3 BASIC4.72□□□□□ -1.65
COL5A3P25940 AC068993.1-201ENST00000546724 589 ntBASIC4.72□□□□□ -1.65
COL5A3P25940 FOPNL-204ENST00000573396 735 ntTSL 3 BASIC4.72□□□□□ -1.65
COL5A3P25940 AC007993.3-202ENST00000585329 725 ntTSL 5 BASIC4.72□□□□□ -1.65
COL5A3P25940 AL139089.1-201ENST00000620372 975 ntBASIC4.72□□□□□ -1.65
COL5A3P25940 LINC02246-205ENST00000627623 417 ntTSL 5 BASIC4.72□□□□□ -1.65
COL5A3P25940 PRRC2C-202ENST00000367742 10366 ntAPPRIS ALT2 TSL 5 BASIC4.72□□□□□ -1.65
COL5A3P25940 ZNF804A-202ENST00000613975 3986 ntTSL 5 BASIC4.72□□□□□ -1.65
COL5A3P25940 ZNF345-214ENST00000612719 2938 ntAPPRIS P1 TSL 4 BASIC4.72□□□□□ -1.65
COL5A3P25940 GPR171-201ENST00000309180 1786 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
COL5A3P25940 PREPL-205ENST00000409411 4725 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
COL5A3P25940 MPDZ-208ENST00000447879 6262 ntAPPRIS ALT2 TSL 1 (best) BASIC4.72□□□□□ -1.65
COL5A3P25940 DOCK7-202ENST00000340370 6731 ntAPPRIS P3 TSL 2 BASIC4.72□□□□□ -1.65
COL5A3P25940 AC011604.2-201ENST00000381541 2268 ntAPPRIS ALT2 TSL 2 BASIC4.72□□□□□ -1.65
COL5A3P25940 PTPN13-201ENST00000316707 7546 ntAPPRIS ALT2 TSL 1 (best) BASIC4.72□□□□□ -1.65
COL5A3P25940 OR7A5-201ENST00000322301 4216 ntAPPRIS P1 BASIC4.72□□□□□ -1.65
COL5A3P25940 SMAD4-202ENST00000398417 8495 ntAPPRIS P1 TSL 5 BASIC4.72□□□□□ -1.65
COL5A3P25940 AC010740.1-201ENST00000417035 684 ntBASIC4.72□□□□□ -1.65
COL5A3P25940 RPL21P110-201ENST00000433345 446 ntBASIC4.72□□□□□ -1.65
COL5A3P25940 SETP4-201ENST00000455717 868 ntBASIC4.72□□□□□ -1.65
COL5A3P25940 CXCL11-202ENST00000503860 767 ntAPPRIS P1 TSL 3 BASIC4.72□□□□□ -1.65
COL5A3P25940 AL133247.2-201ENST00000603236 482 ntBASIC4.72□□□□□ -1.65
COL5A3P25940 AC079880.2-201ENST00000603790 1213 ntBASIC4.72□□□□□ -1.65
COL5A3P25940 AC104971.4-201ENST00000622763 249 ntTSL 5 BASIC4.72□□□□□ -1.65
COL5A3P25940 PI15-202ENST00000523773 1413 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
COL5A3P25940 DMD-211ENST00000378707 7410 ntTSL 5 BASIC4.72□□□□□ -1.65
COL5A3P25940 CD36-221ENST00000534394 1741 ntTSL 2 BASIC4.71□□□□□ -1.65
COL5A3P25940 LINC01222-201ENST00000427439 1785 ntTSL 2 BASIC4.71□□□□□ -1.65
COL5A3P25940 PTPRB-202ENST00000334414 12316 ntAPPRIS P4 TSL 1 (best) BASIC4.71□□□□□ -1.66
COL5A3P25940 ZCCHC7-202ENST00000336755 2619 ntAPPRIS P1 TSL 2 BASIC4.71□□□□□ -1.66
COL5A3P25940 ALS2CR12-202ENST00000392257 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC4.71□□□□□ -1.66
COL5A3P25940 TCF12-203ENST00000343827 3956 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
COL5A3P25940 KCNIP4-207ENST00000509207 1301 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
COL5A3P25940 AC096644.3-201ENST00000416788 338 ntBASIC4.71□□□□□ -1.66
COL5A3P25940 AL512649.1-201ENST00000428997 581 ntBASIC4.71□□□□□ -1.66
COL5A3P25940 UBTFL9-201ENST00000534504 1148 ntBASIC4.71□□□□□ -1.66
COL5A3P25940 AC067968.2-201ENST00000592583 566 ntTSL 4 BASIC4.71□□□□□ -1.66
COL5A3P25940 PRRC1-202ENST00000442138 5504 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 98.6 ms