Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 AC091806.1-201ENST00000452690 3000 ntTSL 2 BASIC7.32□□□□□ -1.24
COL9A1P20849 IFIT2-202ENST00000611722 3038 ntAPPRIS ALT2 TSL 5 BASIC7.32□□□□□ -1.24
COL9A1P20849 FHL1-227ENST00000628568 2304 ntTSL 5 BASIC7.32□□□□□ -1.24
COL9A1P20849 TNP1-201ENST00000236979 407 ntAPPRIS P1 TSL 1 (best) BASIC7.32□□□□□ -1.24
COL9A1P20849 OR5AS1-201ENST00000313555 975 ntAPPRIS P1 BASIC7.32□□□□□ -1.24
COL9A1P20849 FAM183A-201ENST00000335282 488 ntAPPRIS P1 TSL 2 BASIC7.32□□□□□ -1.24
COL9A1P20849 Y_RNA.297-201ENST00000364950 91 ntBASIC7.32□□□□□ -1.24
COL9A1P20849 AC117402.1-202ENST00000383686 820 ntTSL 2 BASIC7.32□□□□□ -1.24
COL9A1P20849 RNU6-338P-201ENST00000383888 105 ntBASIC7.32□□□□□ -1.24
COL9A1P20849 RNU6-48P-201ENST00000384161 107 ntBASIC7.32□□□□□ -1.24
COL9A1P20849 Y_RNA.551-201ENST00000384661 102 ntBASIC7.32□□□□□ -1.24
COL9A1P20849 PCNPP3-201ENST00000393579 471 ntBASIC7.32□□□□□ -1.24
COL9A1P20849 ERMN-202ENST00000409216 746 ntTSL 4 BASIC7.32□□□□□ -1.24
COL9A1P20849 RNA5SP198-201ENST00000410376 127 ntBASIC7.32□□□□□ -1.24
COL9A1P20849 LINC01811-201ENST00000415991 594 ntTSL 5 BASIC7.32□□□□□ -1.24
COL9A1P20849 RAC1P3-201ENST00000416129 580 ntBASIC7.32□□□□□ -1.24
COL9A1P20849 AL138760.1-201ENST00000423283 435 ntTSL 3 BASIC7.32□□□□□ -1.24
COL9A1P20849 AC010737.1-201ENST00000426699 559 ntTSL 2 BASIC7.32□□□□□ -1.24
COL9A1P20849 AC093151.2-201ENST00000429109 394 ntTSL 3 BASIC7.32□□□□□ -1.24
COL9A1P20849 UBE2V1P13-201ENST00000436983 439 ntBASIC7.32□□□□□ -1.24
COL9A1P20849 AC008278.2-201ENST00000438178 409 ntTSL 3 BASIC7.32□□□□□ -1.24
COL9A1P20849 PIK3IP1-AS1-201ENST00000440456 554 ntTSL 3 BASIC7.32□□□□□ -1.24
COL9A1P20849 AC106892.1-201ENST00000491608 406 ntTSL 3 BASIC7.32□□□□□ -1.24
COL9A1P20849 AC017091.1-202ENST00000510941 504 ntTSL 3 BASIC7.32□□□□□ -1.24
COL9A1P20849 GAPDHP62-201ENST00000515313 990 ntBASIC7.32□□□□□ -1.24
COL9A1P20849 IGKV2D-38-201ENST00000518423 240 ntBASIC7.32□□□□□ -1.24
COL9A1P20849 PKIA-203ENST00000518467 588 ntAPPRIS P1 TSL 1 (best) BASIC7.32□□□□□ -1.24
COL9A1P20849 AP003123.1-201ENST00000526041 333 ntTSL 2 BASIC7.32□□□□□ -1.24
COL9A1P20849 AP002770.2-201ENST00000543613 532 ntBASIC7.32□□□□□ -1.24
COL9A1P20849 AC092375.1-201ENST00000550410 637 ntBASIC7.32□□□□□ -1.24
COL9A1P20849 AC126323.6-201ENST00000561701 451 ntTSL 3 BASIC7.32□□□□□ -1.24
COL9A1P20849 AC007225.2-201ENST00000562529 256 ntBASIC7.32□□□□□ -1.24
COL9A1P20849 SUB1P3-201ENST00000564581 315 ntBASIC7.32□□□□□ -1.24
COL9A1P20849 PWRN1-209ENST00000568019 359 ntTSL 3 BASIC7.32□□□□□ -1.24
COL9A1P20849 AP005059.2-201ENST00000577527 578 ntTSL 3 BASIC7.32□□□□□ -1.24
COL9A1P20849 MIR3691-201ENST00000578066 90 ntBASIC7.32□□□□□ -1.24
COL9A1P20849 MIR1273E-201ENST00000581165 102 ntBASIC7.32□□□□□ -1.24
COL9A1P20849 AC005288.1-201ENST00000582842 860 ntTSL 2 BASIC7.32□□□□□ -1.24
COL9A1P20849 AC010605.1-201ENST00000597303 797 ntTSL 2 BASIC7.32□□□□□ -1.24
COL9A1P20849 AL121809.2-201ENST00000613169 341 ntBASIC7.32□□□□□ -1.24
COL9A1P20849 AP000843.1-201ENST00000624880 701 ntBASIC7.32□□□□□ -1.24
COL9A1P20849 AC055839.1-201ENST00000634467 498 ntBASIC7.32□□□□□ -1.24
COL9A1P20849 PTPRR-203ENST00000378778 2632 ntTSL 1 (best) BASIC7.32□□□□□ -1.24
COL9A1P20849 CRISP1-204ENST00000507853 1793 ntTSL 1 (best) BASIC7.32□□□□□ -1.24
COL9A1P20849 IL31RA-207ENST00000490985 2414 ntTSL 1 (best) BASIC7.32□□□□□ -1.24
COL9A1P20849 SLC8A3-208ENST00000533541 3409 ntTSL 2 BASIC7.32□□□□□ -1.24
COL9A1P20849 FRMD3-207ENST00000621208 5064 ntTSL 1 (best) BASIC7.32□□□□□ -1.24
COL9A1P20849 AC245505.2-201ENST00000553572 3055 ntBASIC7.32□□□□□ -1.24
COL9A1P20849 TCF4-203ENST00000398339 2551 ntTSL 1 (best) BASIC7.32□□□□□ -1.24
COL9A1P20849 BBOX1-202ENST00000525090 1596 ntAPPRIS P1 TSL 1 (best) BASIC7.32□□□□□ -1.24
COL9A1P20849 KIFAP3-203ENST00000367767 2718 ntTSL 1 (best) BASIC7.32□□□□□ -1.24
COL9A1P20849 ANXA1-202ENST00000376911 2209 ntAPPRIS P1 TSL 1 (best) BASIC7.32□□□□□ -1.24
COL9A1P20849 FKTN-204ENST00000448551 1700 ntTSL 2 BASIC7.32□□□□□ -1.24
COL9A1P20849 NUP214-201ENST00000359428 7600 ntAPPRIS P3 TSL 1 (best) BASIC7.32□□□□□ -1.24
COL9A1P20849 NLRP13-202ENST00000588751 3533 ntAPPRIS ALT2 TSL 5 BASIC7.32□□□□□ -1.24
COL9A1P20849 RUNX1T1-249ENST00000613886 7401 ntAPPRIS ALT1 TSL 5 BASIC7.32□□□□□ -1.24
COL9A1P20849 N4BP2L1-209ENST00000530622 1897 ntTSL 5 BASIC7.32□□□□□ -1.24
COL9A1P20849 TRIM2-203ENST00000437508 3832 ntAPPRIS P1 TSL 1 (best) BASIC7.32□□□□□ -1.24
COL9A1P20849 ZNF639-201ENST00000326361 6064 ntAPPRIS P1 TSL 1 (best) BASIC7.32□□□□□ -1.24
COL9A1P20849 UBAP2-204ENST00000379238 4289 ntAPPRIS P1 TSL 5 BASIC7.32□□□□□ -1.24
COL9A1P20849 LRRC37A9P-201ENST00000603850 5376 ntBASIC7.32□□□□□ -1.24
COL9A1P20849 FRY-207ENST00000542859 13200 ntAPPRIS P1 TSL 5 BASIC7.32□□□□□ -1.24
COL9A1P20849 ZNF674-207ENST00000523374 4073 ntAPPRIS P3 TSL 1 (best) BASIC7.32□□□□□ -1.24
COL9A1P20849 TMCC1-203ENST00000432054 5631 ntTSL 1 (best) BASIC7.31□□□□□ -1.24
COL9A1P20849 EHHADH-201ENST00000231887 3850 ntAPPRIS P1 TSL 1 (best) BASIC7.31□□□□□ -1.24
COL9A1P20849 MAPK10-279ENST00000641157 2449 ntBASIC7.31□□□□□ -1.24
COL9A1P20849 AC022031.1-201ENST00000585985 2593 ntBASIC7.31□□□□□ -1.24
COL9A1P20849 CCDC162P-202ENST00000368966 6751 ntBASIC7.31□□□□□ -1.24
COL9A1P20849 RNF139-AS1-201ENST00000499418 5654 ntTSL 1 (best) BASIC7.31□□□□□ -1.24
COL9A1P20849 ZNF200-203ENST00000396871 3162 ntAPPRIS ALT2 TSL 1 (best) BASIC7.31□□□□□ -1.24
COL9A1P20849 AC097714.1-201ENST00000511272 1647 ntBASIC7.31□□□□□ -1.24
COL9A1P20849 GJA9-201ENST00000357771 1799 ntAPPRIS P1 TSL 1 (best) BASIC7.31□□□□□ -1.24
COL9A1P20849 LINC02431-202ENST00000505329 1788 ntTSL 1 (best) BASIC7.31□□□□□ -1.24
COL9A1P20849 CASC17-201ENST00000569074 2059 ntTSL 1 (best) BASIC7.31□□□□□ -1.24
COL9A1P20849 ABCA1-202ENST00000374736 10494 ntAPPRIS P1 TSL 1 (best) BASIC7.31□□□□□ -1.24
COL9A1P20849 LINC02209-201ENST00000521245 2651 ntTSL 1 (best) BASIC7.31□□□□□ -1.24
COL9A1P20849 CAST-234ENST00000511049 3273 ntAPPRIS ALT2 TSL 5 BASIC7.31□□□□□ -1.24
COL9A1P20849 ABLIM3-202ENST00000326685 4164 ntTSL 5 BASIC7.31□□□□□ -1.24
COL9A1P20849 EYA1-202ENST00000340726 4326 ntAPPRIS P3 TSL 1 (best) BASIC7.31□□□□□ -1.24
COL9A1P20849 AL080317.3-201ENST00000607434 4315 ntBASIC7.31□□□□□ -1.24
COL9A1P20849 RPS29-201ENST00000245458 296 ntAPPRIS P1 TSL 1 (best) BASIC7.31□□□□□ -1.24
COL9A1P20849 FOXP2-201ENST00000350908 2638 ntAPPRIS P2 TSL 1 (best) BASIC7.31□□□□□ -1.24
COL9A1P20849 SNORD115-7-201ENST00000365306 82 ntBASIC7.31□□□□□ -1.24
COL9A1P20849 SNORA51.6-201ENST00000384151 125 ntBASIC7.31□□□□□ -1.24
COL9A1P20849 MIR585-201ENST00000384887 94 ntBASIC7.31□□□□□ -1.24
COL9A1P20849 RNA5SP219-201ENST00000390940 113 ntBASIC7.31□□□□□ -1.24
COL9A1P20849 RPL9P21-201ENST00000392269 505 ntBASIC7.31□□□□□ -1.24
COL9A1P20849 AP000580.1-201ENST00000404439 358 ntBASIC7.31□□□□□ -1.24
COL9A1P20849 GSTM3P2-201ENST00000412746 530 ntBASIC7.31□□□□□ -1.24
COL9A1P20849 CBX1P3-201ENST00000413296 527 ntBASIC7.31□□□□□ -1.24
COL9A1P20849 RAC1P4-201ENST00000419413 579 ntBASIC7.31□□□□□ -1.24
COL9A1P20849 CD33-203ENST00000421133 1023 ntTSL 1 (best) BASIC7.31□□□□□ -1.24
COL9A1P20849 GAPDHP57-201ENST00000424400 585 ntBASIC7.31□□□□□ -1.24
COL9A1P20849 AC099782.1-201ENST00000425889 474 ntBASIC7.31□□□□□ -1.24
COL9A1P20849 AC091390.2-201ENST00000432573 374 ntBASIC7.31□□□□□ -1.24
COL9A1P20849 LINC01757-201ENST00000435552 480 ntTSL 2 BASIC7.31□□□□□ -1.24
COL9A1P20849 AC013399.1-201ENST00000450311 418 ntBASIC7.31□□□□□ -1.24
COL9A1P20849 AC108860.1-201ENST00000484521 383 ntBASIC7.31□□□□□ -1.24
COL9A1P20849 PGAM1P13-201ENST00000507497 754 ntBASIC7.31□□□□□ -1.24
COL9A1P20849 RNA5SP384-201ENST00000516615 116 ntBASIC7.31□□□□□ -1.24
Retrieved 100 of 98,524 protein–RNA pairs in 108.8 ms