Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 AC093014.1-201ENST00000548926 724 ntBASIC4.15□□□□□ -1.75
HOXD4P09016 AC009396.1-201ENST00000553628 1079 ntTSL 2 BASIC4.15□□□□□ -1.75
HOXD4P09016 AL161804.1-201ENST00000555600 708 ntTSL 3 BASIC4.15□□□□□ -1.75
HOXD4P09016 AC093249.4-201ENST00000564755 259 ntBASIC4.15□□□□□ -1.75
HOXD4P09016 MIR3160-1-201ENST00000577972 85 ntBASIC4.15□□□□□ -1.75
HOXD4P09016 AC090371.2-205ENST00000580366 490 ntTSL 3 BASIC4.15□□□□□ -1.75
HOXD4P09016 AC023575.1-201ENST00000580510 358 ntBASIC4.15□□□□□ -1.75
HOXD4P09016 ZNF540-204ENST00000586792 564 ntTSL 3 BASIC4.15□□□□□ -1.75
HOXD4P09016 AP001120.2-201ENST00000589395 296 ntTSL 3 BASIC4.15□□□□□ -1.75
HOXD4P09016 AC068020.1-201ENST00000594215 661 ntBASIC4.15□□□□□ -1.75
HOXD4P09016 AL670729.3-201ENST00000602345 574 ntTSL 4 BASIC4.15□□□□□ -1.75
HOXD4P09016 AC130352.1-201ENST00000602979 661 ntBASIC4.15□□□□□ -1.75
HOXD4P09016 AC008782.1-201ENST00000603386 430 ntBASIC4.15□□□□□ -1.75
HOXD4P09016 C8orf59-210ENST00000614462 734 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
HOXD4P09016 AC023510.2-201ENST00000622162 746 ntBASIC4.15□□□□□ -1.75
HOXD4P09016 AC011944.2-201ENST00000624440 683 ntBASIC4.15□□□□□ -1.75
HOXD4P09016 LINC01247-201ENST00000448901 4209 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
HOXD4P09016 FAM204A-203ENST00000369183 13889 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
HOXD4P09016 CNTN1-201ENST00000347616 5507 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
HOXD4P09016 EOGT-210ENST00000615922 1931 ntBASIC4.15□□□□□ -1.75
HOXD4P09016 AL450326.2-201ENST00000421913 1962 ntBASIC4.14□□□□□ -1.75
HOXD4P09016 CENPI-201ENST00000372926 2375 ntAPPRIS ALT2 TSL 5 BASIC4.14□□□□□ -1.75
HOXD4P09016 UBR1-201ENST00000290650 7761 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
HOXD4P09016 SLC5A12-202ENST00000396005 6250 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
HOXD4P09016 NEDD4-201ENST00000338963 7019 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
HOXD4P09016 SDCBP-213ENST00000630925 2076 ntTSL 5 BASIC4.14□□□□□ -1.75
HOXD4P09016 GABRA2-202ENST00000381620 2525 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
HOXD4P09016 RNA5SP509-201ENST00000364577 119 ntBASIC4.14□□□□□ -1.75
HOXD4P09016 U3.35-201ENST00000408405 208 ntBASIC4.14□□□□□ -1.75
HOXD4P09016 AC069282.1-201ENST00000411911 526 ntBASIC4.14□□□□□ -1.75
HOXD4P09016 TTTY12-201ENST00000413466 979 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
HOXD4P09016 AL590806.1-201ENST00000415818 853 ntBASIC4.14□□□□□ -1.75
HOXD4P09016 AC063965.1-201ENST00000416679 499 ntTSL 3 BASIC4.14□□□□□ -1.75
HOXD4P09016 AL133419.1-201ENST00000423153 640 ntTSL 3 BASIC4.14□□□□□ -1.75
HOXD4P09016 AL512637.2-201ENST00000431287 1256 ntBASIC4.14□□□□□ -1.75
HOXD4P09016 MRPL50P1-201ENST00000431951 384 ntBASIC4.14□□□□□ -1.75
HOXD4P09016 ARHGAP26-IT1-201ENST00000433186 388 ntTSL 3 BASIC4.14□□□□□ -1.75
HOXD4P09016 AC004938.1-201ENST00000438468 308 ntBASIC4.14□□□□□ -1.75
HOXD4P09016 CACYBPP1-201ENST00000438592 684 ntBASIC4.14□□□□□ -1.75
HOXD4P09016 GABRG3-AS1-201ENST00000439938 970 ntTSL 2 BASIC4.14□□□□□ -1.75
HOXD4P09016 AL357520.1-201ENST00000441557 453 ntBASIC4.14□□□□□ -1.75
HOXD4P09016 LINC01075-201ENST00000455977 370 ntTSL 3 BASIC4.14□□□□□ -1.75
HOXD4P09016 RPS26P28-201ENST00000470806 348 ntBASIC4.14□□□□□ -1.75
HOXD4P09016 CFHR2-203ENST00000476712 1020 ntAPPRIS ALT2 TSL 3 BASIC4.14□□□□□ -1.75
HOXD4P09016 RN7SL809P-201ENST00000482040 297 ntBASIC4.14□□□□□ -1.75
HOXD4P09016 RPS4XP18-201ENST00000495480 763 ntBASIC4.14□□□□□ -1.75
HOXD4P09016 AC093824.1-201ENST00000508796 343 ntBASIC4.14□□□□□ -1.75
HOXD4P09016 AC006063.1-201ENST00000512511 560 ntTSL 4 BASIC4.14□□□□□ -1.75
HOXD4P09016 AC093535.1-201ENST00000515808 747 ntTSL 3 BASIC4.14□□□□□ -1.75
HOXD4P09016 RNU6-334P-201ENST00000517072 102 ntBASIC4.14□□□□□ -1.75
HOXD4P09016 IGLVIV-53-201ENST00000520107 367 ntBASIC4.14□□□□□ -1.75
HOXD4P09016 AC099520.2-201ENST00000523745 567 ntTSL 3 BASIC4.14□□□□□ -1.75
HOXD4P09016 AC104248.1-202ENST00000524134 486 ntTSL 5 BASIC4.14□□□□□ -1.75
HOXD4P09016 AP001781.1-201ENST00000530977 207 ntBASIC4.14□□□□□ -1.75
HOXD4P09016 NRG3-205ENST00000537893 1174 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
HOXD4P09016 AC126178.1-201ENST00000548722 926 ntTSL 2 BASIC4.14□□□□□ -1.75
HOXD4P09016 AL109766.1-201ENST00000555080 552 ntBASIC4.14□□□□□ -1.75
HOXD4P09016 MIR1254-2-201ENST00000579553 63 ntBASIC4.14□□□□□ -1.75
HOXD4P09016 AP001542.3-201ENST00000587619 527 ntTSL 5 BASIC4.14□□□□□ -1.75
HOXD4P09016 MTCO3P22-201ENST00000603219 784 ntBASIC4.14□□□□□ -1.75
HOXD4P09016 AC115286.1-201ENST00000604298 434 ntBASIC4.14□□□□□ -1.75
HOXD4P09016 AC097504.2-201ENST00000608088 454 ntBASIC4.14□□□□□ -1.75
HOXD4P09016 AL096803.3-201ENST00000609032 532 ntBASIC4.14□□□□□ -1.75
HOXD4P09016 MIR1264-201ENST00000616374 69 ntBASIC4.14□□□□□ -1.75
HOXD4P09016 GXYLT1P4-203ENST00000616580 641 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
HOXD4P09016 AC234782.5-201ENST00000617723 324 ntBASIC4.14□□□□□ -1.75
HOXD4P09016 AP002967.1-201ENST00000624203 539 ntBASIC4.14□□□□□ -1.75
HOXD4P09016 CHRM3-AS2-209ENST00000628573 766 ntTSL 5 BASIC4.14□□□□□ -1.75
HOXD4P09016 RBMS3-AS3-202ENST00000635847 738 ntTSL 5 BASIC4.14□□□□□ -1.75
HOXD4P09016 ACKR4-201ENST00000249887 1914 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
HOXD4P09016 OSBPL6-201ENST00000190611 10513 ntAPPRIS P3 TSL 1 (best) BASIC4.14□□□□□ -1.75
HOXD4P09016 MGA-202ENST00000545763 11413 ntAPPRIS ALT2 TSL 5 BASIC4.14□□□□□ -1.75
HOXD4P09016 TPTE2-205ENST00000400230 1793 ntAPPRIS P1 TSL 5 BASIC4.14□□□□□ -1.75
HOXD4P09016 CDKL3-209ENST00000523054 1775 ntTSL 2 BASIC4.14□□□□□ -1.75
HOXD4P09016 MBNL3-201ENST00000370839 1575 ntAPPRIS ALT1 TSL 1 (best) BASIC4.14□□□□□ -1.75
HOXD4P09016 AC079062.1-203ENST00000581862 3610 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
HOXD4P09016 AC016588.2-201ENST00000632484 3021 ntBASIC4.13□□□□□ -1.75
HOXD4P09016 SLAIN2-205ENST00000512093 4219 ntTSL 5 BASIC4.13□□□□□ -1.75
HOXD4P09016 CNOT1-201ENST00000317147 8471 ntAPPRIS P3 TSL 1 (best) BASIC4.13□□□□□ -1.75
HOXD4P09016 RNF133-201ENST00000340112 1445 ntAPPRIS P1 BASIC4.13□□□□□ -1.75
HOXD4P09016 LINC00862-204ENST00000637098 1400 ntTSL 5 BASIC4.13□□□□□ -1.75
HOXD4P09016 RAPH1-203ENST00000374493 3909 ntAPPRIS ALT2 TSL 5 BASIC4.13□□□□□ -1.75
HOXD4P09016 AC092079.1-201ENST00000558620 1985 ntBASIC4.13□□□□□ -1.75
HOXD4P09016 IFI16-208ENST00000448393 2245 ntAPPRIS ALT2 TSL 5 BASIC4.13□□□□□ -1.75
HOXD4P09016 CUL2-209ENST00000537177 4271 ntTSL 5 BASIC4.13□□□□□ -1.75
HOXD4P09016 MTTP-201ENST00000265517 4037 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
HOXD4P09016 ZC3H14-215ENST00000555900 1762 ntTSL 5 BASIC4.13□□□□□ -1.75
HOXD4P09016 CDKL3-210ENST00000523832 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC4.13□□□□□ -1.75
HOXD4P09016 OR52N4-201ENST00000317254 1037 ntAPPRIS P1 BASIC4.13□□□□□ -1.75
HOXD4P09016 RNA5SP388-201ENST00000362584 119 ntBASIC4.13□□□□□ -1.75
HOXD4P09016 OR5L2-201ENST00000378397 936 ntAPPRIS P1 BASIC4.13□□□□□ -1.75
HOXD4P09016 SNORA57.1-201ENST00000391227 145 ntBASIC4.13□□□□□ -1.75
HOXD4P09016 GSTA12P-201ENST00000402398 508 ntBASIC4.13□□□□□ -1.75
HOXD4P09016 AC009226.1-201ENST00000432413 539 ntTSL 3 BASIC4.13□□□□□ -1.75
HOXD4P09016 AC011998.1-201ENST00000433403 117 ntBASIC4.13□□□□□ -1.75
HOXD4P09016 AL512661.1-201ENST00000434586 1253 ntBASIC4.13□□□□□ -1.75
HOXD4P09016 PPIAP13-201ENST00000434706 478 ntBASIC4.13□□□□□ -1.75
HOXD4P09016 AL157387.1-201ENST00000436077 335 ntTSL 2 BASIC4.13□□□□□ -1.75
HOXD4P09016 CASP3P1-201ENST00000446037 609 ntBASIC4.13□□□□□ -1.75
HOXD4P09016 AC239367.2-201ENST00000447309 705 ntBASIC4.13□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 98 ms