Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 LINC01689-201ENST00000416218 2007 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
PCDHGA1Q9Y5H4 INPP4B-220ENST00000513000 8831 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
PCDHGA1Q9Y5H4 RGS5-201ENST00000313961 5862 ntAPPRIS P3 TSL 1 (best) BASIC4.54□□□□□ -1.68
PCDHGA1Q9Y5H4 AL445487.1-201ENST00000415694 1580 ntBASIC4.54□□□□□ -1.68
PCDHGA1Q9Y5H4 DCUN1D1-208ENST00000632685 3147 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
PCDHGA1Q9Y5H4 PMP2-201ENST00000256103 3608 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
PCDHGA1Q9Y5H4 AL592182.3-201ENST00000642132 3304 ntBASIC4.54□□□□□ -1.68
PCDHGA1Q9Y5H4 RNU1-64P-201ENST00000365443 163 ntBASIC4.54□□□□□ -1.68
PCDHGA1Q9Y5H4 RNU6-98P-201ENST00000384173 107 ntBASIC4.54□□□□□ -1.68
PCDHGA1Q9Y5H4 TRAV14DV4-201ENST00000390440 425 ntAPPRIS P1 BASIC4.54□□□□□ -1.68
PCDHGA1Q9Y5H4 TRAV36DV7-201ENST00000390463 356 ntAPPRIS P1 BASIC4.54□□□□□ -1.68
PCDHGA1Q9Y5H4 SNORA48.7-201ENST00000391302 135 ntBASIC4.54□□□□□ -1.68
PCDHGA1Q9Y5H4 SDHCP2-201ENST00000398565 501 ntBASIC4.54□□□□□ -1.68
PCDHGA1Q9Y5H4 U3.32-201ENST00000408116 212 ntBASIC4.54□□□□□ -1.68
PCDHGA1Q9Y5H4 IQCA1-AS1-201ENST00000413353 489 ntTSL 3 BASIC4.54□□□□□ -1.68
PCDHGA1Q9Y5H4 ITCH-IT1-201ENST00000418598 208 ntTSL 3 BASIC4.54□□□□□ -1.68
PCDHGA1Q9Y5H4 DYNLL1P7-201ENST00000429273 258 ntBASIC4.54□□□□□ -1.68
PCDHGA1Q9Y5H4 AL354896.1-201ENST00000430214 561 ntTSL 4 BASIC4.54□□□□□ -1.68
PCDHGA1Q9Y5H4 AC002378.1-201ENST00000432360 298 ntTSL 3 BASIC4.54□□□□□ -1.68
PCDHGA1Q9Y5H4 AC092162.1-201ENST00000432828 434 ntBASIC4.54□□□□□ -1.68
PCDHGA1Q9Y5H4 AC002465.1-201ENST00000436097 349 ntTSL 2 BASIC4.54□□□□□ -1.68
PCDHGA1Q9Y5H4 LINC01967-202ENST00000437506 515 ntTSL 5 BASIC4.54□□□□□ -1.68
PCDHGA1Q9Y5H4 LINC01431-201ENST00000442440 514 ntTSL 3 BASIC4.54□□□□□ -1.68
PCDHGA1Q9Y5H4 CDC27P1-201ENST00000445384 715 ntBASIC4.54□□□□□ -1.68
PCDHGA1Q9Y5H4 TPTE2P6-202ENST00000445572 1007 ntBASIC4.54□□□□□ -1.68
PCDHGA1Q9Y5H4 CYCSP34-201ENST00000458172 304 ntBASIC4.54□□□□□ -1.68
PCDHGA1Q9Y5H4 AL049829.1-201ENST00000465411 156 ntBASIC4.54□□□□□ -1.68
PCDHGA1Q9Y5H4 RPL21P129-201ENST00000491732 478 ntBASIC4.54□□□□□ -1.68
PCDHGA1Q9Y5H4 AC020900.1-201ENST00000502568 565 ntTSL 4 BASIC4.54□□□□□ -1.68
PCDHGA1Q9Y5H4 LINC01612-201ENST00000504509 469 ntTSL 3 BASIC4.54□□□□□ -1.68
PCDHGA1Q9Y5H4 LINC01609-201ENST00000519506 424 ntTSL 3 BASIC4.54□□□□□ -1.68
PCDHGA1Q9Y5H4 OR5AK3P-201ENST00000527486 1297 ntBASIC4.54□□□□□ -1.68
PCDHGA1Q9Y5H4 OR4R2P-201ENST00000530815 597 ntBASIC4.54□□□□□ -1.68
PCDHGA1Q9Y5H4 AP001360.2-201ENST00000534423 562 ntTSL 4 BASIC4.54□□□□□ -1.68
PCDHGA1Q9Y5H4 MYRFL-202ENST00000535034 881 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
PCDHGA1Q9Y5H4 AL118556.1-201ENST00000555257 502 ntTSL 2 BASIC4.54□□□□□ -1.68
PCDHGA1Q9Y5H4 AC027104.1-201ENST00000563702 681 ntBASIC4.54□□□□□ -1.68
PCDHGA1Q9Y5H4 AC090751.1-201ENST00000566966 267 ntBASIC4.54□□□□□ -1.68
PCDHGA1Q9Y5H4 AC079070.1-201ENST00000578740 555 ntTSL 2 BASIC4.54□□□□□ -1.68
PCDHGA1Q9Y5H4 AC069366.1-201ENST00000583159 838 ntBASIC4.54□□□□□ -1.68
PCDHGA1Q9Y5H4 LINC01539-206ENST00000593282 678 ntTSL 4 BASIC4.54□□□□□ -1.68
PCDHGA1Q9Y5H4 ZNF66-203ENST00000594534 757 ntTSL 5 BASIC4.54□□□□□ -1.68
PCDHGA1Q9Y5H4 VN1R85P-201ENST00000601587 426 ntBASIC4.54□□□□□ -1.68
PCDHGA1Q9Y5H4 NUDT12-202ENST00000507423 1781 ntTSL 2 BASIC4.54□□□□□ -1.68
PCDHGA1Q9Y5H4 ATPAF1-212ENST00000542495 1779 ntTSL 2 BASIC4.54□□□□□ -1.68
PCDHGA1Q9Y5H4 SALL4P2-201ENST00000423288 2910 ntBASIC4.54□□□□□ -1.68
PCDHGA1Q9Y5H4 OR5A1-202ENST00000641045 8612 ntAPPRIS P1 BASIC4.54□□□□□ -1.68
PCDHGA1Q9Y5H4 AL022393.1-201ENST00000625142 1677 ntBASIC4.54□□□□□ -1.68
PCDHGA1Q9Y5H4 CUL3-216ENST00000617432 1426 ntTSL 5 BASIC4.54□□□□□ -1.68
PCDHGA1Q9Y5H4 CDH10-201ENST00000264463 3438 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
PCDHGA1Q9Y5H4 AC092650.1-201ENST00000447571 1808 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
PCDHGA1Q9Y5H4 AL139811.1-201ENST00000424779 2299 ntBASIC4.53□□□□□ -1.68
PCDHGA1Q9Y5H4 ITGB1-205ENST00000423113 3729 ntAPPRIS ALT1 TSL 5 BASIC4.53□□□□□ -1.68
PCDHGA1Q9Y5H4 LMNTD1-202ENST00000413632 1520 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
PCDHGA1Q9Y5H4 OR51H2P-202ENST00000641424 3046 ntBASIC4.53□□□□□ -1.68
PCDHGA1Q9Y5H4 AL672167.1-204ENST00000641875 3017 ntBASIC4.53□□□□□ -1.68
PCDHGA1Q9Y5H4 DLX6-AS1-201ENST00000430027 15364 ntTSL 2 BASIC4.53□□□□□ -1.68
PCDHGA1Q9Y5H4 BDH2-201ENST00000296424 1126 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
PCDHGA1Q9Y5H4 RNU6-792P-201ENST00000363490 107 ntBASIC4.53□□□□□ -1.68
PCDHGA1Q9Y5H4 TRAJ4-201ENST00000390533 63 ntAPPRIS P1 BASIC4.53□□□□□ -1.68
PCDHGA1Q9Y5H4 AL359643.1-201ENST00000404109 423 ntBASIC4.53□□□□□ -1.68
PCDHGA1Q9Y5H4 RNU2-65P-201ENST00000410162 185 ntBASIC4.53□□□□□ -1.68
PCDHGA1Q9Y5H4 TMBIM7P-201ENST00000418074 855 ntBASIC4.53□□□□□ -1.68
PCDHGA1Q9Y5H4 LIX1L-AS1-205ENST00000437797 536 ntTSL 3 BASIC4.53□□□□□ -1.68
PCDHGA1Q9Y5H4 AL138799.2-201ENST00000439024 343 ntTSL 2 BASIC4.53□□□□□ -1.68
PCDHGA1Q9Y5H4 HCG17-214ENST00000453558 732 ntTSL 5 BASIC4.53□□□□□ -1.68
PCDHGA1Q9Y5H4 AC078857.1-201ENST00000469870 667 ntBASIC4.53□□□□□ -1.68
PCDHGA1Q9Y5H4 RN7SL817P-201ENST00000480777 288 ntBASIC4.53□□□□□ -1.68
PCDHGA1Q9Y5H4 RPL36AP41-201ENST00000493820 306 ntBASIC4.53□□□□□ -1.68
PCDHGA1Q9Y5H4 EGFLAM-AS3-201ENST00000505267 549 ntTSL 5 BASIC4.53□□□□□ -1.68
PCDHGA1Q9Y5H4 AC026402.1-201ENST00000513642 170 ntBASIC4.53□□□□□ -1.68
PCDHGA1Q9Y5H4 AC069272.1-201ENST00000514843 680 ntTSL 3 BASIC4.53□□□□□ -1.68
PCDHGA1Q9Y5H4 MTCO1P35-201ENST00000515270 228 ntBASIC4.53□□□□□ -1.68
PCDHGA1Q9Y5H4 RNU6-709P-201ENST00000517257 104 ntBASIC4.53□□□□□ -1.68
PCDHGA1Q9Y5H4 AC027031.1-201ENST00000517318 489 ntTSL 3 BASIC4.53□□□□□ -1.68
PCDHGA1Q9Y5H4 AC025524.2-211ENST00000519990 1173 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
PCDHGA1Q9Y5H4 AC008562.1-201ENST00000521763 330 ntBASIC4.53□□□□□ -1.68
PCDHGA1Q9Y5H4 OSGEPL1-AS1-203ENST00000523895 567 ntTSL 4 BASIC4.53□□□□□ -1.68
PCDHGA1Q9Y5H4 AC018616.1-201ENST00000524085 546 ntTSL 5 BASIC4.53□□□□□ -1.68
PCDHGA1Q9Y5H4 AP001636.3-202ENST00000525714 894 ntTSL 3 BASIC4.53□□□□□ -1.68
PCDHGA1Q9Y5H4 GCSAML-207ENST00000527541 1094 ntAPPRIS ALT2 TSL 1 (best) BASIC4.53□□□□□ -1.68
PCDHGA1Q9Y5H4 TEX12-202ENST00000530752 787 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
PCDHGA1Q9Y5H4 OSBPL9P3-201ENST00000534523 595 ntBASIC4.53□□□□□ -1.68
PCDHGA1Q9Y5H4 AC126178.1-201ENST00000548722 926 ntTSL 2 BASIC4.53□□□□□ -1.68
PCDHGA1Q9Y5H4 PCLAF-203ENST00000558008 766 ntTSL 3 BASIC4.53□□□□□ -1.68
PCDHGA1Q9Y5H4 AC105129.1-201ENST00000560250 297 ntBASIC4.53□□□□□ -1.68
PCDHGA1Q9Y5H4 C15orf41-203ENST00000562489 715 ntTSL 2 BASIC4.53□□□□□ -1.68
PCDHGA1Q9Y5H4 MIR3138-201ENST00000585238 82 ntBASIC4.53□□□□□ -1.68
PCDHGA1Q9Y5H4 AC015911.9-201ENST00000591634 185 ntTSL 5 BASIC4.53□□□□□ -1.68
PCDHGA1Q9Y5H4 AC079880.2-201ENST00000603790 1213 ntBASIC4.53□□□□□ -1.68
PCDHGA1Q9Y5H4 OR7A19P-201ENST00000608051 733 ntBASIC4.53□□□□□ -1.68
PCDHGA1Q9Y5H4 AC092574.1-201ENST00000609771 420 ntBASIC4.53□□□□□ -1.68
PCDHGA1Q9Y5H4 AL392048.1-201ENST00000613946 534 ntBASIC4.53□□□□□ -1.68
PCDHGA1Q9Y5H4 AC034229.5-201ENST00000624258 185 ntBASIC4.53□□□□□ -1.68
PCDHGA1Q9Y5H4 U3.53-201ENST00000628922 216 ntBASIC4.53□□□□□ -1.68
PCDHGA1Q9Y5H4 AL589740.1-205ENST00000635561 565 ntTSL 5 BASIC4.53□□□□□ -1.68
PCDHGA1Q9Y5H4 SCN11A-203ENST00000456224 5262 ntAPPRIS ALT2 TSL 5 BASIC4.53□□□□□ -1.68
PCDHGA1Q9Y5H4 FUT9-201ENST00000302103 12783 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
PCDHGA1Q9Y5H4 KLHL13-201ENST00000262820 3972 ntAPPRIS P3 TSL 1 (best) BASIC4.53□□□□□ -1.68
PCDHGA1Q9Y5H4 FKTN-201ENST00000223528 7364 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 78.2 ms