Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 AC090193.1-201ENST00000518633 543 ntTSL 4 BASIC4.31□□□□□ -1.72
LHX3Q9UBR4 TRDN-204ENST00000542443 1294 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
LHX3Q9UBR4 SETP1-201ENST00000556014 845 ntBASIC4.31□□□□□ -1.72
LHX3Q9UBR4 ZFAND6-204ENST00000558087 909 ntAPPRIS P1 TSL 5 BASIC4.31□□□□□ -1.72
LHX3Q9UBR4 C15orf41-203ENST00000562489 715 ntTSL 2 BASIC4.31□□□□□ -1.72
LHX3Q9UBR4 AC091563.1-202ENST00000574086 522 ntTSL 5 BASIC4.31□□□□□ -1.72
LHX3Q9UBR4 KATNBL1P5-201ENST00000605015 517 ntBASIC4.31□□□□□ -1.72
LHX3Q9UBR4 5S_rRNA.16-201ENST00000612928 119 ntBASIC4.31□□□□□ -1.72
LHX3Q9UBR4 AC006338.2-201ENST00000616864 791 ntBASIC4.31□□□□□ -1.72
LHX3Q9UBR4 AC023509.5-201ENST00000617434 807 ntBASIC4.31□□□□□ -1.72
LHX3Q9UBR4 ANXA1-202ENST00000376911 2209 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
LHX3Q9UBR4 ZNF12-203ENST00000404360 4474 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
LHX3Q9UBR4 RBBP6-202ENST00000348022 5739 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
LHX3Q9UBR4 ATP13A3-211ENST00000619199 5227 ntTSL 2 BASIC4.31□□□□□ -1.72
LHX3Q9UBR4 EXTL2-201ENST00000370113 2835 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
LHX3Q9UBR4 PTPRC-201ENST00000348564 4626 ntAPPRIS ALT2 TSL 1 (best) BASIC4.3□□□□□ -1.72
LHX3Q9UBR4 CNTN6-205ENST00000446702 4513 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
LHX3Q9UBR4 RACGAP1-202ENST00000427314 3229 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
LHX3Q9UBR4 AP001267.1-201ENST00000531742 2074 ntTSL 2 BASIC4.3□□□□□ -1.72
LHX3Q9UBR4 RPL26-201ENST00000293842 524 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
LHX3Q9UBR4 CFHR2-201ENST00000367415 1059 ntAPPRIS P2 TSL 1 (best) BASIC4.3□□□□□ -1.72
LHX3Q9UBR4 HMGB1P10-201ENST00000395823 563 ntBASIC4.3□□□□□ -1.72
LHX3Q9UBR4 VN1R8P-201ENST00000407739 893 ntBASIC4.3□□□□□ -1.72
LHX3Q9UBR4 RNU2-17P-201ENST00000410290 190 ntBASIC4.3□□□□□ -1.72
LHX3Q9UBR4 SLC8A1-AS1-201ENST00000413479 800 ntTSL 5 BASIC4.3□□□□□ -1.72
LHX3Q9UBR4 AC009237.10-201ENST00000414112 510 ntBASIC4.3□□□□□ -1.72
LHX3Q9UBR4 AC010163.2-201ENST00000416341 381 ntTSL 2 BASIC4.3□□□□□ -1.72
LHX3Q9UBR4 MORF4L1P7-201ENST00000426038 703 ntBASIC4.3□□□□□ -1.72
LHX3Q9UBR4 RSL24D1P6-201ENST00000426934 401 ntBASIC4.3□□□□□ -1.72
LHX3Q9UBR4 AC073335.1-201ENST00000427776 363 ntBASIC4.3□□□□□ -1.72
LHX3Q9UBR4 MTATP6P11-201ENST00000428071 670 ntBASIC4.3□□□□□ -1.72
LHX3Q9UBR4 FO393419.3-201ENST00000428741 282 ntBASIC4.3□□□□□ -1.72
LHX3Q9UBR4 AL136987.1-201ENST00000434300 396 ntTSL 5 BASIC4.3□□□□□ -1.72
LHX3Q9UBR4 AL358972.1-201ENST00000434356 466 ntTSL 2 BASIC4.3□□□□□ -1.72
LHX3Q9UBR4 AL353597.2-202ENST00000434901 373 ntBASIC4.3□□□□□ -1.72
LHX3Q9UBR4 LINC00415-201ENST00000439079 435 ntTSL 3 BASIC4.3□□□□□ -1.72
LHX3Q9UBR4 RPL23AP23-201ENST00000452590 471 ntBASIC4.3□□□□□ -1.72
LHX3Q9UBR4 LINC01014-203ENST00000455307 548 ntTSL 2 BASIC4.3□□□□□ -1.72
LHX3Q9UBR4 NECTIN3-AS1-202ENST00000467426 664 ntTSL 3 BASIC4.3□□□□□ -1.72
LHX3Q9UBR4 FAM107B-218ENST00000479731 570 ntAPPRIS P1 TSL 3 BASIC4.3□□□□□ -1.72
LHX3Q9UBR4 LINC01017-201ENST00000508823 768 ntTSL 3 BASIC4.3□□□□□ -1.72
LHX3Q9UBR4 AC021146.3-201ENST00000511911 260 ntBASIC4.3□□□□□ -1.72
LHX3Q9UBR4 AP000942.2-201ENST00000526310 628 ntTSL 3 BASIC4.3□□□□□ -1.72
LHX3Q9UBR4 PHBP17-201ENST00000528576 541 ntBASIC4.3□□□□□ -1.72
LHX3Q9UBR4 AC025918.2-201ENST00000558683 763 ntBASIC4.3□□□□□ -1.72
LHX3Q9UBR4 AC007496.1-201ENST00000565641 739 ntTSL 3 BASIC4.3□□□□□ -1.72
LHX3Q9UBR4 AC018552.3-201ENST00000567416 561 ntBASIC4.3□□□□□ -1.72
LHX3Q9UBR4 RN7SL176P-201ENST00000580352 264 ntBASIC4.3□□□□□ -1.72
LHX3Q9UBR4 LINC01791-201ENST00000589511 677 ntTSL 5 BASIC4.3□□□□□ -1.72
LHX3Q9UBR4 AC006237.1-201ENST00000603816 480 ntTSL 3 BASIC4.3□□□□□ -1.72
LHX3Q9UBR4 AL023881.1-201ENST00000621088 301 ntBASIC4.3□□□□□ -1.72
LHX3Q9UBR4 AC073592.7-201ENST00000623659 507 ntBASIC4.3□□□□□ -1.72
LHX3Q9UBR4 AC024023.1-201ENST00000624530 922 ntBASIC4.3□□□□□ -1.72
LHX3Q9UBR4 MBNL3-201ENST00000370839 1575 ntAPPRIS ALT1 TSL 1 (best) BASIC4.3□□□□□ -1.72
LHX3Q9UBR4 MATR3-228ENST00000620916 3134 ntTSL 5 BASIC4.3□□□□□ -1.72
LHX3Q9UBR4 IQGAP2-204ENST00000502745 3404 ntTSL 2 BASIC4.3□□□□□ -1.72
LHX3Q9UBR4 GHR-202ENST00000357703 4316 ntTSL 5 BASIC4.3□□□□□ -1.72
LHX3Q9UBR4 GHR-213ENST00000622294 4312 ntTSL 5 BASIC4.3□□□□□ -1.72
LHX3Q9UBR4 ZFPM2-203ENST00000517361 3300 ntTSL 2 BASIC4.29□□□□□ -1.72
LHX3Q9UBR4 CCDC91-201ENST00000381259 2334 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
LHX3Q9UBR4 AC005261.4-201ENST00000600047 1385 ntBASIC4.29□□□□□ -1.72
LHX3Q9UBR4 CROT-204ENST00000442291 1993 ntTSL 5 BASIC4.29□□□□□ -1.72
LHX3Q9UBR4 PHKBP1-201ENST00000450951 1951 ntBASIC4.29□□□□□ -1.72
LHX3Q9UBR4 AC010186.3-201ENST00000537616 2508 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
LHX3Q9UBR4 IQCH-202ENST00000358767 3062 ntTSL 5 BASIC4.29□□□□□ -1.72
LHX3Q9UBR4 SAMSN1-201ENST00000285670 2185 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
LHX3Q9UBR4 AL133243.3-201ENST00000617415 3004 ntBASIC4.29□□□□□ -1.72
LHX3Q9UBR4 AC021086.1-201ENST00000499025 1569 ntTSL 3 BASIC4.29□□□□□ -1.72
LHX3Q9UBR4 SNORA70.2-201ENST00000364506 135 ntBASIC4.29□□□□□ -1.72
LHX3Q9UBR4 WFDC6-202ENST00000372670 620 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
LHX3Q9UBR4 AL590867.1-201ENST00000392385 1212 ntTSL 2 BASIC4.29□□□□□ -1.72
LHX3Q9UBR4 AC013404.1-201ENST00000413068 249 ntBASIC4.29□□□□□ -1.72
LHX3Q9UBR4 AL357078.2-201ENST00000416486 427 ntBASIC4.29□□□□□ -1.72
LHX3Q9UBR4 LINC01341-201ENST00000419361 552 ntTSL 2 BASIC4.29□□□□□ -1.72
LHX3Q9UBR4 BX119904.1-201ENST00000432026 348 ntBASIC4.29□□□□□ -1.72
LHX3Q9UBR4 AL035458.1-201ENST00000433096 585 ntBASIC4.29□□□□□ -1.72
LHX3Q9UBR4 PTP4A1P3-201ENST00000433661 420 ntBASIC4.29□□□□□ -1.72
LHX3Q9UBR4 AL353718.1-201ENST00000451028 517 ntBASIC4.29□□□□□ -1.72
LHX3Q9UBR4 MTND2P30-201ENST00000456663 382 ntBASIC4.29□□□□□ -1.72
LHX3Q9UBR4 AC079804.1-201ENST00000461922 436 ntBASIC4.29□□□□□ -1.72
LHX3Q9UBR4 RN7SL385P-201ENST00000468873 276 ntBASIC4.29□□□□□ -1.72
LHX3Q9UBR4 LINC02005-201ENST00000498832 782 ntTSL 3 BASIC4.29□□□□□ -1.72
LHX3Q9UBR4 AC111000.4-201ENST00000504301 569 ntTSL 5 BASIC4.29□□□□□ -1.72
LHX3Q9UBR4 AC113404.3-201ENST00000506621 555 ntTSL 5 BASIC4.29□□□□□ -1.72
LHX3Q9UBR4 AC002456.2-201ENST00000509356 380 ntBASIC4.29□□□□□ -1.72
LHX3Q9UBR4 AC004704.1-201ENST00000511219 583 ntTSL 3 BASIC4.29□□□□□ -1.72
LHX3Q9UBR4 AL049544.1-201ENST00000511849 673 ntTSL 3 BASIC4.29□□□□□ -1.72
LHX3Q9UBR4 KCTD9P2-201ENST00000512203 1013 ntBASIC4.29□□□□□ -1.72
LHX3Q9UBR4 AC099522.1-202ENST00000514718 367 ntBASIC4.29□□□□□ -1.72
LHX3Q9UBR4 AC083923.2-202ENST00000517773 498 ntTSL 3 BASIC4.29□□□□□ -1.72
LHX3Q9UBR4 IGLV3-26-201ENST00000520756 302 ntBASIC4.29□□□□□ -1.72
LHX3Q9UBR4 MRPL49P2-201ENST00000521066 465 ntBASIC4.29□□□□□ -1.72
LHX3Q9UBR4 AL132780.1-201ENST00000548819 556 ntTSL 4 BASIC4.29□□□□□ -1.72
LHX3Q9UBR4 LINC02316-201ENST00000553346 768 ntTSL 3 BASIC4.29□□□□□ -1.72
LHX3Q9UBR4 LINC00520-201ENST00000554186 831 ntTSL 5 BASIC4.29□□□□□ -1.72
LHX3Q9UBR4 PSMA3-213ENST00000557508 814 ntTSL 5 BASIC4.29□□□□□ -1.72
LHX3Q9UBR4 MIR7973-1-201ENST00000614683 76 ntBASIC4.29□□□□□ -1.72
LHX3Q9UBR4 CC2D2B-209ENST00000618242 980 ntTSL 5 BASIC4.29□□□□□ -1.72
LHX3Q9UBR4 LINC01709-202ENST00000635702 1204 ntTSL 5 BASIC4.29□□□□□ -1.72
LHX3Q9UBR4 TAOK3-202ENST00000419821 4301 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 78.3 ms