Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 UNC80-203ENST00000439458 13562 ntAPPRIS P1 TSL 5 BASIC5.38□□□□□ -1.55
TDP1Q9NUW8 FAM197Y3-202ENST00000427622 2325 ntTSL 5 BASIC5.38□□□□□ -1.55
TDP1Q9NUW8 FAM197Y7-202ENST00000433321 2325 ntTSL 2 BASIC5.38□□□□□ -1.55
TDP1Q9NUW8 ANKRD20A17P-201ENST00000511745 1330 ntBASIC5.38□□□□□ -1.55
TDP1Q9NUW8 FILIP1-203ENST00000393004 7807 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
TDP1Q9NUW8 AC096656.1-201ENST00000623826 1364 ntBASIC5.38□□□□□ -1.55
TDP1Q9NUW8 SLC1A3-201ENST00000265113 4170 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
TDP1Q9NUW8 LRIT3-201ENST00000327908 3781 ntTSL 2 BASIC5.38□□□□□ -1.55
TDP1Q9NUW8 ZNF81-202ENST00000338637 7859 ntAPPRIS P1 TSL 3 BASIC5.38□□□□□ -1.55
TDP1Q9NUW8 NCOA3-203ENST00000372004 7939 ntAPPRIS ALT2 TSL 1 (best) BASIC5.38□□□□□ -1.55
TDP1Q9NUW8 AC016745.2-201ENST00000608834 3443 ntBASIC5.38□□□□□ -1.55
TDP1Q9NUW8 AC004158.1-201ENST00000564508 4319 ntBASIC5.37□□□□□ -1.55
TDP1Q9NUW8 DNAJC10-208ENST00000537515 1669 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
TDP1Q9NUW8 ADCY10-201ENST00000367848 5055 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
TDP1Q9NUW8 ADAM29-203ENST00000445694 3244 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
TDP1Q9NUW8 DAZ4-205ENST00000440066 1891 ntTSL 5 BASIC5.37□□□□□ -1.55
TDP1Q9NUW8 ZNF83-202ENST00000536937 2726 ntAPPRIS P1 TSL 2 BASIC5.37□□□□□ -1.55
TDP1Q9NUW8 PEX26-201ENST00000329627 18445 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
TDP1Q9NUW8 SCARNA15-201ENST00000607520 4325 ntBASIC5.37□□□□□ -1.55
TDP1Q9NUW8 PTPRC-209ENST00000442510 5164 ntAPPRIS P4 TSL 1 (best) BASIC5.37□□□□□ -1.55
TDP1Q9NUW8 RNU6-621P-201ENST00000364752 109 ntBASIC5.37□□□□□ -1.55
TDP1Q9NUW8 RN7SKP153-201ENST00000365026 316 ntBASIC5.37□□□□□ -1.55
TDP1Q9NUW8 TMCO2-201ENST00000372766 739 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
TDP1Q9NUW8 Y_RNA.560-201ENST00000384689 102 ntBASIC5.37□□□□□ -1.55
TDP1Q9NUW8 SNORD116-4-201ENST00000384733 96 ntBASIC5.37□□□□□ -1.55
TDP1Q9NUW8 ARL4A-204ENST00000396664 1144 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
TDP1Q9NUW8 RPS3AP26-201ENST00000398259 784 ntBASIC5.37□□□□□ -1.55
TDP1Q9NUW8 RN7SKP114-201ENST00000410327 279 ntBASIC5.37□□□□□ -1.55
TDP1Q9NUW8 RNU2-42P-201ENST00000410697 113 ntBASIC5.37□□□□□ -1.55
TDP1Q9NUW8 TIMM9P2-201ENST00000419324 266 ntBASIC5.37□□□□□ -1.55
TDP1Q9NUW8 OFD1P2Y-201ENST00000421895 1149 ntBASIC5.37□□□□□ -1.55
TDP1Q9NUW8 IL23R-203ENST00000425614 1295 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
TDP1Q9NUW8 MTCO2P16-201ENST00000436962 677 ntBASIC5.37□□□□□ -1.55
TDP1Q9NUW8 PARGP1-202ENST00000440803 790 ntTSL 2 BASIC5.37□□□□□ -1.55
TDP1Q9NUW8 LINC01923-201ENST00000443261 592 ntTSL 5 BASIC5.37□□□□□ -1.55
TDP1Q9NUW8 RPL12P26-201ENST00000452430 487 ntBASIC5.37□□□□□ -1.55
TDP1Q9NUW8 LINC01487-202ENST00000490497 423 ntTSL 3 BASIC5.37□□□□□ -1.55
TDP1Q9NUW8 AC138965.1-202ENST00000502354 547 ntTSL 5 BASIC5.37□□□□□ -1.55
TDP1Q9NUW8 AC140125.3-201ENST00000505248 547 ntTSL 4 BASIC5.37□□□□□ -1.55
TDP1Q9NUW8 AC005178.1-201ENST00000508392 440 ntBASIC5.37□□□□□ -1.55
TDP1Q9NUW8 TCP11X3P-202ENST00000514289 1254 ntBASIC5.37□□□□□ -1.55
TDP1Q9NUW8 RN7SKP31-201ENST00000516354 278 ntBASIC5.37□□□□□ -1.55
TDP1Q9NUW8 RNA5SP135-201ENST00000517019 125 ntBASIC5.37□□□□□ -1.55
TDP1Q9NUW8 NRG1-IT1-202ENST00000521463 742 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
TDP1Q9NUW8 AC008562.1-201ENST00000521763 330 ntBASIC5.37□□□□□ -1.55
TDP1Q9NUW8 AP001267.3-204ENST00000528578 423 ntTSL 3 BASIC5.37□□□□□ -1.55
TDP1Q9NUW8 PARPBP-209ENST00000537257 976 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
TDP1Q9NUW8 PRR4-212ENST00000544994 326 ntAPPRIS ALT2 TSL 1 (best) BASIC5.37□□□□□ -1.55
TDP1Q9NUW8 AKIRIN1P1-201ENST00000547384 544 ntBASIC5.37□□□□□ -1.55
TDP1Q9NUW8 AC024909.2-201ENST00000553035 286 ntBASIC5.37□□□□□ -1.55
TDP1Q9NUW8 AL358913.1-201ENST00000554342 121 ntBASIC5.37□□□□□ -1.55
TDP1Q9NUW8 AL121852.1-201ENST00000554665 430 ntTSL 3 BASIC5.37□□□□□ -1.55
TDP1Q9NUW8 LINC00871-201ENST00000555246 408 ntTSL 5 BASIC5.37□□□□□ -1.55
TDP1Q9NUW8 SPINK14-202ENST00000562793 157 ntTSL 5 BASIC5.37□□□□□ -1.55
TDP1Q9NUW8 AC087501.4-201ENST00000574460 235 ntTSL 5 BASIC5.37□□□□□ -1.55
TDP1Q9NUW8 MIR4691-201ENST00000583764 85 ntBASIC5.37□□□□□ -1.55
TDP1Q9NUW8 AC097467.3-208ENST00000593486 670 ntTSL 5 BASIC5.37□□□□□ -1.55
TDP1Q9NUW8 AC108738.1-201ENST00000603703 237 ntBASIC5.37□□□□□ -1.55
TDP1Q9NUW8 AC087783.2-201ENST00000605070 562 ntBASIC5.37□□□□□ -1.55
TDP1Q9NUW8 MIR6820-201ENST00000611508 62 ntBASIC5.37□□□□□ -1.55
TDP1Q9NUW8 AC005858.1-201ENST00000620193 677 ntTSL 2 BASIC5.37□□□□□ -1.55
TDP1Q9NUW8 AC073348.1-201ENST00000623002 331 ntBASIC5.37□□□□□ -1.55
TDP1Q9NUW8 RBM12B-AS1-201ENST00000623283 653 ntBASIC5.37□□□□□ -1.55
TDP1Q9NUW8 PCBP1-AS1-278ENST00000625518 864 ntTSL 5 BASIC5.37□□□□□ -1.55
TDP1Q9NUW8 AC109462.4-201ENST00000637882 581 ntTSL 5 BASIC5.37□□□□□ -1.55
TDP1Q9NUW8 NR2C2-213ENST00000617312 8113 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
TDP1Q9NUW8 SLITRK4-202ENST00000356928 3074 ntAPPRIS P1 TSL 2 BASIC5.37□□□□□ -1.55
TDP1Q9NUW8 RAD17-220ENST00000616683 3057 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
TDP1Q9NUW8 AC093849.1-201ENST00000563631 2209 ntBASIC5.37□□□□□ -1.55
TDP1Q9NUW8 GABRA1-215ENST00000636573 2262 ntAPPRIS P1 TSL 5 BASIC5.37□□□□□ -1.55
TDP1Q9NUW8 CD47-201ENST00000355354 5020 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
TDP1Q9NUW8 CASC19-221ENST00000641309 1382 ntBASIC5.37□□□□□ -1.55
TDP1Q9NUW8 NTRK3-205ENST00000394480 19984 ntAPPRIS P3 TSL 5 BASIC5.37□□□□□ -1.55
TDP1Q9NUW8 GABPB1-204ENST00000396464 1401 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
TDP1Q9NUW8 BNIP2-202ENST00000415213 1509 ntTSL 2 BASIC5.37□□□□□ -1.55
TDP1Q9NUW8 GPATCH11-201ENST00000281932 3570 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
TDP1Q9NUW8 AC019197.1-201ENST00000638199 3611 ntTSL 5 BASIC5.37□□□□□ -1.55
TDP1Q9NUW8 CNBD1-202ENST00000518476 1594 ntAPPRIS P2 TSL 1 (best) BASIC5.37□□□□□ -1.55
TDP1Q9NUW8 MROH2B-203ENST00000506092 3745 ntTSL 2 BASIC5.37□□□□□ -1.55
TDP1Q9NUW8 MYCT1-201ENST00000367245 3030 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
TDP1Q9NUW8 FLG2-201ENST00000388718 9124 ntAPPRIS P1 TSL 5 BASIC5.37□□□□□ -1.55
TDP1Q9NUW8 AC083843.2-201ENST00000568248 6253 ntBASIC5.36□□□□□ -1.55
TDP1Q9NUW8 SEC31A-209ENST00000500777 3610 ntTSL 5 BASIC5.36□□□□□ -1.55
TDP1Q9NUW8 MUM1L1-202ENST00000357175 4173 ntAPPRIS P1 TSL 2 BASIC5.36□□□□□ -1.55
TDP1Q9NUW8 SMG1P7-201ENST00000565246 2704 ntBASIC5.36□□□□□ -1.55
TDP1Q9NUW8 NCOA3-201ENST00000371997 6750 ntAPPRIS ALT2 TSL 1 (best) BASIC5.36□□□□□ -1.55
TDP1Q9NUW8 LMO3-209ENST00000447609 3365 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
TDP1Q9NUW8 FGF1-202ENST00000359370 3660 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
TDP1Q9NUW8 IL1RAPL1-202ENST00000378993 3667 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
TDP1Q9NUW8 AC008549.2-201ENST00000333482 706 ntBASIC5.36□□□□□ -1.55
TDP1Q9NUW8 RN7SKP185-201ENST00000362813 326 ntBASIC5.36□□□□□ -1.55
TDP1Q9NUW8 RNU5D-1-201ENST00000363299 116 ntBASIC5.36□□□□□ -1.55
TDP1Q9NUW8 Y_RNA.311-201ENST00000365068 96 ntBASIC5.36□□□□□ -1.55
TDP1Q9NUW8 TUBD1-204ENST00000376094 1154 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
TDP1Q9NUW8 SNORA51.12-201ENST00000384448 134 ntBASIC5.36□□□□□ -1.55
TDP1Q9NUW8 RNU6-1300P-201ENST00000391046 108 ntBASIC5.36□□□□□ -1.55
TDP1Q9NUW8 C1D-204ENST00000410067 736 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
TDP1Q9NUW8 Y_RNA.625-201ENST00000411256 107 ntBASIC5.36□□□□□ -1.55
TDP1Q9NUW8 AC104777.3-201ENST00000416350 545 ntTSL 3 BASIC5.36□□□□□ -1.55
TDP1Q9NUW8 GRK5-IT1-201ENST00000421206 400 ntTSL 3 BASIC5.36□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 115.5 ms