Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 CDON-201ENST00000263577 4186 ntAPPRIS P3 TSL 1 (best) BASIC6.35□□□□□ -1.39
MSX1P28360 NF1-202ENST00000358273 12425 ntAPPRIS ALT1 TSL 1 (best) BASIC6.35□□□□□ -1.39
MSX1P28360 AC083806.2-201ENST00000617795 2685 ntBASIC6.35□□□□□ -1.39
MSX1P28360 CDKAL1-202ENST00000378610 3115 ntAPPRIS P1 TSL 2 BASIC6.35□□□□□ -1.39
MSX1P28360 NEDD9-202ENST00000379446 4536 ntAPPRIS P3 TSL 1 (best) BASIC6.35□□□□□ -1.39
MSX1P28360 SMCO3-201ENST00000316048 2104 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
MSX1P28360 SPIRE1-206ENST00000453447 2107 ntTSL 5 BASIC6.35□□□□□ -1.39
MSX1P28360 PSG4-201ENST00000244295 1629 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
MSX1P28360 AC114401.1-201ENST00000484222 2084 ntTSL 2 BASIC6.35□□□□□ -1.39
MSX1P28360 ERMARD-202ENST00000366772 2003 ntTSL 5 BASIC6.35□□□□□ -1.39
MSX1P28360 BMPR1APS1-201ENST00000403332 1598 ntBASIC6.35□□□□□ -1.39
MSX1P28360 PSMB2-202ENST00000621781 4217 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
MSX1P28360 TMEM135-201ENST00000305494 2433 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
MSX1P28360 GABRR1-206ENST00000611484 3259 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
MSX1P28360 AC102941.1-201ENST00000567616 1537 ntBASIC6.35□□□□□ -1.39
MSX1P28360 LMOD2-202ENST00000458573 2346 ntAPPRIS P1 TSL 2 BASIC6.34□□□□□ -1.39
MSX1P28360 KPNA2P2-201ENST00000419546 1489 ntBASIC6.34□□□□□ -1.39
MSX1P28360 SYTL4-203ENST00000372981 4847 ntTSL 2 BASIC6.34□□□□□ -1.39
MSX1P28360 ABCD3-202ENST00000370214 3538 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
MSX1P28360 NXPE1-204ENST00000536271 2289 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
MSX1P28360 ANKS1B-216ENST00000549558 2268 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
MSX1P28360 AL671511.1-201ENST00000425033 3458 ntTSL 2 BASIC6.34□□□□□ -1.39
MSX1P28360 NOL8-208ENST00000442668 4281 ntAPPRIS P3 TSL 1 (best) BASIC6.34□□□□□ -1.39
MSX1P28360 PRUNE1-202ENST00000368934 2214 ntTSL 2 BASIC6.34□□□□□ -1.39
MSX1P28360 CATSPER2-202ENST00000381761 1758 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
MSX1P28360 AKAP5-202ENST00000394718 6487 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
MSX1P28360 OLFM3-202ENST00000370103 3255 ntAPPRIS P3 TSL 1 (best) BASIC6.34□□□□□ -1.39
MSX1P28360 ZEB2-AS1-202ENST00000427278 1322 ntTSL 5 BASIC6.34□□□□□ -1.39
MSX1P28360 SGO1-AS1-205ENST00000634837 1677 ntTSL 5 BASIC6.34□□□□□ -1.39
MSX1P28360 ADGRE1-202ENST00000312053 3128 ntAPPRIS P3 TSL 1 (best) BASIC6.34□□□□□ -1.39
MSX1P28360 ST7-203ENST00000393443 2360 ntTSL 2 BASIC6.34□□□□□ -1.39
MSX1P28360 AC130304.1-201ENST00000622942 2385 ntBASIC6.34□□□□□ -1.39
MSX1P28360 TSHB-201ENST00000256592 537 ntAPPRIS P1 TSL 5 BASIC6.34□□□□□ -1.39
MSX1P28360 RNU6-984P-201ENST00000363236 109 ntBASIC6.34□□□□□ -1.39
MSX1P28360 U3.12-201ENST00000364498 214 ntBASIC6.34□□□□□ -1.39
MSX1P28360 RNU6-343P-201ENST00000364709 104 ntBASIC6.34□□□□□ -1.39
MSX1P28360 AL031679.1-201ENST00000400616 525 ntBASIC6.34□□□□□ -1.39
MSX1P28360 LIPN-201ENST00000404459 1197 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
MSX1P28360 MIR1266-201ENST00000408125 84 ntBASIC6.34□□□□□ -1.39
MSX1P28360 AC137499.1-201ENST00000427602 88 ntBASIC6.34□□□□□ -1.39
MSX1P28360 AC018804.1-201ENST00000430381 618 ntBASIC6.34□□□□□ -1.39
MSX1P28360 MRPS21P3-201ENST00000436696 262 ntBASIC6.34□□□□□ -1.39
MSX1P28360 LRRC23-208ENST00000436789 796 ntTSL 3 BASIC6.34□□□□□ -1.39
MSX1P28360 RPL36AP15-201ENST00000444514 266 ntBASIC6.34□□□□□ -1.39
MSX1P28360 AC117513.1-201ENST00000462792 766 ntTSL 2 BASIC6.34□□□□□ -1.39
MSX1P28360 LINC01214-201ENST00000471222 335 ntTSL 5 BASIC6.34□□□□□ -1.39
MSX1P28360 LEKR1-205ENST00000477399 621 ntTSL 2 BASIC6.34□□□□□ -1.39
MSX1P28360 AC095057.1-201ENST00000507583 168 ntBASIC6.34□□□□□ -1.39
MSX1P28360 RPL39P5-202ENST00000512505 151 ntBASIC6.34□□□□□ -1.39
MSX1P28360 RNU6-202P-201ENST00000515998 96 ntBASIC6.34□□□□□ -1.39
MSX1P28360 SNORD27.1-201ENST00000516319 72 ntBASIC6.34□□□□□ -1.39
MSX1P28360 AP001804.3-201ENST00000525146 880 ntBASIC6.34□□□□□ -1.39
MSX1P28360 AC012038.2-201ENST00000553006 256 ntTSL 3 BASIC6.34□□□□□ -1.39
MSX1P28360 AL355102.1-201ENST00000555383 460 ntTSL 5 BASIC6.34□□□□□ -1.39
MSX1P28360 MEG8-218ENST00000556720 456 ntTSL 3 BASIC6.34□□□□□ -1.39
MSX1P28360 AC012100.2-201ENST00000558317 304 ntTSL 5 BASIC6.34□□□□□ -1.39
MSX1P28360 SNORD39.3-201ENST00000584451 71 ntBASIC6.34□□□□□ -1.39
MSX1P28360 AC239809.3-206ENST00000596091 741 ntTSL 5 BASIC6.34□□□□□ -1.39
MSX1P28360 AC245052.7-201ENST00000601161 359 ntBASIC6.34□□□□□ -1.39
MSX1P28360 AC004542.1-201ENST00000602955 264 ntTSL 3 BASIC6.34□□□□□ -1.39
MSX1P28360 HTN1-205ENST00000610341 536 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
MSX1P28360 AC068506.1-202ENST00000613388 545 ntTSL 3 BASIC6.34□□□□□ -1.39
MSX1P28360 AC008626.2-201ENST00000624425 248 ntBASIC6.34□□□□□ -1.39
MSX1P28360 AC005154.1-203ENST00000626245 451 ntTSL 5 BASIC6.34□□□□□ -1.39
MSX1P28360 AC007603.3-201ENST00000636915 979 ntBASIC6.34□□□□□ -1.39
MSX1P28360 AL596275.2-208ENST00000641192 594 ntBASIC6.34□□□□□ -1.39
MSX1P28360 AP000688.2-201ENST00000422473 2336 ntTSL 2 BASIC6.34□□□□□ -1.39
MSX1P28360 EGFEM1P-205ENST00000483846 2327 ntTSL 5 BASIC6.34□□□□□ -1.39
MSX1P28360 CDKL5-205ENST00000623535 12533 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
MSX1P28360 MUC5AC-201ENST00000621226 17448 ntAPPRIS P1 TSL 5 BASIC6.34□□□□□ -1.39
MSX1P28360 PIH1D3-203ENST00000535523 1926 ntAPPRIS P1 TSL 5 BASIC6.34□□□□□ -1.39
MSX1P28360 PATE1-201ENST00000305738 1527 ntAPPRIS P2 TSL 1 (best) BASIC6.34□□□□□ -1.39
MSX1P28360 NIN-204ENST00000382043 4216 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
MSX1P28360 ADI1-202ENST00000382093 3870 ntTSL 2 BASIC6.34□□□□□ -1.39
MSX1P28360 GUSBP1-205ENST00000607545 4157 ntTSL 2 BASIC6.34□□□□□ -1.4
MSX1P28360 SMC1A-201ENST00000322213 9784 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.4
MSX1P28360 C16orf62-202ENST00000417362 3115 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.4
MSX1P28360 ACTR3BP5-201ENST00000448440 1479 ntBASIC6.34□□□□□ -1.4
MSX1P28360 CAP1P2-201ENST00000417455 1409 ntBASIC6.33□□□□□ -1.4
MSX1P28360 TRIM49D1-203ENST00000605881 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC6.33□□□□□ -1.4
MSX1P28360 ZNF571-205ENST00000590751 1700 ntTSL 2 BASIC6.33□□□□□ -1.4
MSX1P28360 DMD-205ENST00000359836 7339 ntTSL 5 BASIC6.33□□□□□ -1.4
MSX1P28360 CSDE1-201ENST00000261443 3228 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
MSX1P28360 AC007406.5-201ENST00000570140 3170 ntBASIC6.33□□□□□ -1.4
MSX1P28360 LINC01981-201ENST00000432163 2833 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
MSX1P28360 SLC38A9-203ENST00000416547 2236 ntTSL 5 BASIC6.33□□□□□ -1.4
MSX1P28360 PBX1-221ENST00000612123 6062 ntTSL 5 BASIC6.33□□□□□ -1.4
MSX1P28360 GRPR-201ENST00000380289 1929 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
MSX1P28360 NT5C3A-202ENST00000381626 1909 ntAPPRIS ALT1 TSL 5 BASIC6.33□□□□□ -1.4
MSX1P28360 SSX7-201ENST00000298181 1311 ntAPPRIS P1 TSL 5 BASIC6.33□□□□□ -1.4
MSX1P28360 CPB2-AS1-202ENST00000606243 2185 ntTSL 2 BASIC6.33□□□□□ -1.4
MSX1P28360 FAM135A-207ENST00000457062 5282 ntAPPRIS P3 TSL 1 (best) BASIC6.33□□□□□ -1.4
MSX1P28360 RPL12P13-201ENST00000310055 497 ntBASIC6.33□□□□□ -1.4
MSX1P28360 C1orf162-201ENST00000343534 1107 ntAPPRIS P3 TSL 1 (best) BASIC6.33□□□□□ -1.4
MSX1P28360 RN7SKP47-201ENST00000365347 328 ntBASIC6.33□□□□□ -1.4
MSX1P28360 AC092634.1-201ENST00000366505 199 ntBASIC6.33□□□□□ -1.4
MSX1P28360 C1orf100-202ENST00000366537 483 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
MSX1P28360 AKAP14-202ENST00000371422 412 ntAPPRIS ALT2 TSL 1 (best) BASIC6.33□□□□□ -1.4
MSX1P28360 AL451142.1-201ENST00000375867 775 ntBASIC6.33□□□□□ -1.4
MSX1P28360 PPIAP26-201ENST00000377951 522 ntBASIC6.33□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 80.3 ms