Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 IGHV3-32-201ENST00000519182 355 ntBASIC3.19□□□□□ -1.9
HLA-DMBP28068 LINC01479-202ENST00000546170 444 ntTSL 2 BASIC3.19□□□□□ -1.9
HLA-DMBP28068 AC026116.1-201ENST00000551729 474 ntTSL 3 BASIC3.19□□□□□ -1.9
HLA-DMBP28068 AC016526.2-201ENST00000554225 520 ntTSL 3 BASIC3.19□□□□□ -1.9
HLA-DMBP28068 AC074237.1-201ENST00000577674 471 ntTSL 3 BASIC3.19□□□□□ -1.9
HLA-DMBP28068 LINC01791-201ENST00000589511 677 ntTSL 5 BASIC3.19□□□□□ -1.9
HLA-DMBP28068 AC020914.4-201ENST00000597690 277 ntBASIC3.19□□□□□ -1.9
HLA-DMBP28068 AC034236.3-201ENST00000605999 461 ntBASIC3.19□□□□□ -1.9
HLA-DMBP28068 LINC00993-204ENST00000606476 500 ntTSL 5 BASIC3.19□□□□□ -1.9
HLA-DMBP28068 AC025175.1-201ENST00000606482 759 ntBASIC3.19□□□□□ -1.9
HLA-DMBP28068 AC116447.1-201ENST00000613153 453 ntBASIC3.19□□□□□ -1.9
HLA-DMBP28068 uc_338.13-201ENST00000618243 179 ntBASIC3.19□□□□□ -1.9
HLA-DMBP28068 AP003497.2-201ENST00000624220 967 ntBASIC3.19□□□□□ -1.9
HLA-DMBP28068 KIAA1524-208ENST00000625495 147 ntTSL 5 BASIC3.19□□□□□ -1.9
HLA-DMBP28068 AC083899.2-201ENST00000423285 1376 ntBASIC3.19□□□□□ -1.9
HLA-DMBP28068 TARID-205ENST00000607033 2960 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
HLA-DMBP28068 ATP13A3-203ENST00000439040 7720 ntAPPRIS P1 TSL 5 BASIC3.19□□□□□ -1.9
HLA-DMBP28068 SEC23A-202ENST00000537403 4215 ntTSL 2 BASIC3.19□□□□□ -1.9
HLA-DMBP28068 THEMIS-204ENST00000537166 3830 ntAPPRIS ALT2 TSL 2 BASIC3.19□□□□□ -1.9
HLA-DMBP28068 FGD4-213ENST00000546442 3503 ntTSL 5 BASIC3.19□□□□□ -1.9
HLA-DMBP28068 CDKL3-210ENST00000523832 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC3.19□□□□□ -1.9
HLA-DMBP28068 AL356317.1-201ENST00000396110 1436 ntBASIC3.19□□□□□ -1.9
HLA-DMBP28068 RMDN2-207ENST00000417700 1426 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
HLA-DMBP28068 MFSD8-220ENST00000641243 1422 ntBASIC3.19□□□□□ -1.9
HLA-DMBP28068 PCDH15-218ENST00000437009 6804 ntTSL 5 BASIC3.19□□□□□ -1.9
HLA-DMBP28068 IFI16-201ENST00000295809 2867 ntAPPRIS ALT2 TSL 5 BASIC3.18□□□□□ -1.9
HLA-DMBP28068 GPR171-201ENST00000309180 1786 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
HLA-DMBP28068 LINC01222-201ENST00000427439 1785 ntTSL 2 BASIC3.18□□□□□ -1.9
HLA-DMBP28068 OR52E4-202ENST00000641726 2947 ntAPPRIS P1 BASIC3.18□□□□□ -1.9
HLA-DMBP28068 ZNF382-203ENST00000435416 3865 ntAPPRIS ALT1 TSL 1 (best) BASIC3.18□□□□□ -1.9
HLA-DMBP28068 DDX60L-201ENST00000260184 6754 ntAPPRIS P1 TSL 5 BASIC3.18□□□□□ -1.9
HLA-DMBP28068 PTP4A1-205ENST00000626021 2203 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
HLA-DMBP28068 TEX30-204ENST00000376027 1106 ntTSL 5 BASIC3.18□□□□□ -1.9
HLA-DMBP28068 AC068538.1-201ENST00000376856 336 ntBASIC3.18□□□□□ -1.9
HLA-DMBP28068 AL607077.1-201ENST00000401718 499 ntBASIC3.18□□□□□ -1.9
HLA-DMBP28068 SNORA11F-201ENST00000408237 128 ntBASIC3.18□□□□□ -1.9
HLA-DMBP28068 RNU6-603P-201ENST00000411403 107 ntBASIC3.18□□□□□ -1.9
HLA-DMBP28068 ZNRF3-IT1-201ENST00000412798 674 ntTSL 5 BASIC3.18□□□□□ -1.9
HLA-DMBP28068 AC098484.2-201ENST00000414339 601 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
HLA-DMBP28068 MTND2P11-201ENST00000423638 648 ntBASIC3.18□□□□□ -1.9
HLA-DMBP28068 SEC63P1-201ENST00000425785 1258 ntBASIC3.18□□□□□ -1.9
HLA-DMBP28068 AC234779.1-201ENST00000425910 285 ntBASIC3.18□□□□□ -1.9
HLA-DMBP28068 AL157831.1-201ENST00000426134 473 ntBASIC3.18□□□□□ -1.9
HLA-DMBP28068 RPL7P4-203ENST00000430239 730 ntBASIC3.18□□□□□ -1.9
HLA-DMBP28068 AC006037.1-201ENST00000437967 287 ntTSL 5 BASIC3.18□□□□□ -1.9
HLA-DMBP28068 SERPINA7P1-201ENST00000443077 631 ntBASIC3.18□□□□□ -1.9
HLA-DMBP28068 AC010975.1-201ENST00000443301 669 ntTSL 3 BASIC3.18□□□□□ -1.9
HLA-DMBP28068 LINC00704-202ENST00000443994 418 ntTSL 2 BASIC3.18□□□□□ -1.9
HLA-DMBP28068 AC069277.2-201ENST00000454211 432 ntBASIC3.18□□□□□ -1.9
HLA-DMBP28068 AC109992.2-201ENST00000460977 765 ntTSL 3 BASIC3.18□□□□□ -1.9
HLA-DMBP28068 RN7SL98P-201ENST00000462271 300 ntBASIC3.18□□□□□ -1.9
HLA-DMBP28068 RPS27L-205ENST00000462430 681 ntTSL 2 BASIC3.18□□□□□ -1.9
HLA-DMBP28068 AC117430.1-201ENST00000474711 801 ntTSL 5 BASIC3.18□□□□□ -1.9
HLA-DMBP28068 AC006517.1-201ENST00000480485 328 ntBASIC3.18□□□□□ -1.9
HLA-DMBP28068 AF213884.1-201ENST00000488102 463 ntBASIC3.18□□□□□ -1.9
HLA-DMBP28068 BTBD11-206ENST00000494235 811 ntTSL 2 BASIC3.18□□□□□ -1.9
HLA-DMBP28068 GYPA-203ENST00000503627 318 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
HLA-DMBP28068 AP001960.1-201ENST00000506494 658 ntBASIC3.18□□□□□ -1.9
HLA-DMBP28068 AC025674.1-201ENST00000507074 324 ntBASIC3.18□□□□□ -1.9
HLA-DMBP28068 LINC01060-205ENST00000512839 716 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
HLA-DMBP28068 RNA5SP519-201ENST00000516480 119 ntBASIC3.18□□□□□ -1.9
HLA-DMBP28068 AC107373.1-201ENST00000522570 603 ntTSL 3 BASIC3.18□□□□□ -1.9
HLA-DMBP28068 NPM1P35-201ENST00000533043 868 ntBASIC3.18□□□□□ -1.9
HLA-DMBP28068 TRAV8-5-201ENST00000537369 341 ntBASIC3.18□□□□□ -1.9
HLA-DMBP28068 TOMM20P2-201ENST00000540082 421 ntBASIC3.18□□□□□ -1.9
HLA-DMBP28068 AC073864.1-201ENST00000540161 562 ntTSL 4 BASIC3.18□□□□□ -1.9
HLA-DMBP28068 PRH1-206ENST00000543626 710 ntAPPRIS P2 TSL 5 BASIC3.18□□□□□ -1.9
HLA-DMBP28068 MIR3939-201ENST00000582614 106 ntBASIC3.18□□□□□ -1.9
HLA-DMBP28068 VN1R79P-201ENST00000593540 513 ntBASIC3.18□□□□□ -1.9
HLA-DMBP28068 IPO5P1-202ENST00000600039 287 ntBASIC3.18□□□□□ -1.9
HLA-DMBP28068 SNX6P1-201ENST00000601728 1224 ntBASIC3.18□□□□□ -1.9
HLA-DMBP28068 AC110741.2-201ENST00000605278 268 ntBASIC3.18□□□□□ -1.9
HLA-DMBP28068 ARF4P1-201ENST00000605447 541 ntBASIC3.18□□□□□ -1.9
HLA-DMBP28068 AC012557.1-201ENST00000607115 611 ntBASIC3.18□□□□□ -1.9
HLA-DMBP28068 AC017076.1-201ENST00000607613 578 ntBASIC3.18□□□□□ -1.9
HLA-DMBP28068 AC005962.2-201ENST00000611427 652 ntBASIC3.18□□□□□ -1.9
HLA-DMBP28068 AC140479.6-201ENST00000633535 357 ntBASIC3.18□□□□□ -1.9
HLA-DMBP28068 DTWD2-201ENST00000304058 4365 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
HLA-DMBP28068 ERBIN-203ENST00000380938 4701 ntTSL 2 BASIC3.18□□□□□ -1.9
HLA-DMBP28068 OR12D1-207ENST00000514827 1712 ntAPPRIS P1 BASIC3.18□□□□□ -1.9
HLA-DMBP28068 LINC01197-202ENST00000555332 3568 ntTSL 3 BASIC3.18□□□□□ -1.9
HLA-DMBP28068 AL158163.1-201ENST00000603915 1649 ntBASIC3.18□□□□□ -1.9
HLA-DMBP28068 SLAIN1-204ENST00000358679 2075 ntAPPRIS P3 TSL 2 BASIC3.18□□□□□ -1.9
HLA-DMBP28068 AC018555.1-201ENST00000567548 1980 ntBASIC3.18□□□□□ -1.9
HLA-DMBP28068 AC233968.1-201ENST00000611212 1300 ntBASIC3.18□□□□□ -1.9
HLA-DMBP28068 FOXP2-207ENST00000393494 2664 ntAPPRIS P2 TSL 5 BASIC3.17□□□□□ -1.9
HLA-DMBP28068 KATNA1-202ENST00000335647 1684 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
HLA-DMBP28068 POSTN-202ENST00000379743 3196 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
HLA-DMBP28068 AC027287.1-201ENST00000553115 1453 ntBASIC3.17□□□□□ -1.9
HLA-DMBP28068 MARK2P15-201ENST00000432204 2186 ntBASIC3.17□□□□□ -1.9
HLA-DMBP28068 MUC19-205ENST00000454784 24775 ntTSL 5 BASIC3.17□□□□□ -1.9
HLA-DMBP28068 WFDC9-201ENST00000326000 659 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
HLA-DMBP28068 ARV1-202ENST00000366658 1170 ntTSL 5 BASIC3.17□□□□□ -1.9
HLA-DMBP28068 OR6C69P-201ENST00000394268 893 ntBASIC3.17□□□□□ -1.9
HLA-DMBP28068 FABP12P1-201ENST00000401911 322 ntBASIC3.17□□□□□ -1.9
HLA-DMBP28068 OTUD6B-202ENST00000404789 1089 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
HLA-DMBP28068 AL138878.1-201ENST00000405131 347 ntBASIC3.17□□□□□ -1.9
HLA-DMBP28068 MIR1183-201ENST00000408856 89 ntBASIC3.17□□□□□ -1.9
HLA-DMBP28068 RN7SKP56-201ENST00000410513 331 ntBASIC3.17□□□□□ -1.9
HLA-DMBP28068 RN7SKP235-201ENST00000410662 305 ntBASIC3.17□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 80.6 ms