Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 ARHGAP28-201ENST00000262227 5369 ntAPPRIS ALT2 TSL 1 (best) BASIC6.01□□□□□ -1.45
COL8A1P27658 LINC02203-204ENST00000628444 2323 ntTSL 2 BASIC6.01□□□□□ -1.45
COL8A1P27658 PIGN-217ENST00000591238 1622 ntTSL 5 BASIC6.01□□□□□ -1.45
COL8A1P27658 RPS29-201ENST00000245458 296 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
COL8A1P27658 XAGE5-201ENST00000351072 478 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
COL8A1P27658 SPP1-202ENST00000360804 1196 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
COL8A1P27658 Y_RNA.152-201ENST00000363578 100 ntBASIC6.01□□□□□ -1.45
COL8A1P27658 RNY1P12-201ENST00000364251 105 ntBASIC6.01□□□□□ -1.45
COL8A1P27658 Y_RNA.493-201ENST00000384422 102 ntBASIC6.01□□□□□ -1.45
COL8A1P27658 Y_RNA.646-201ENST00000410980 101 ntBASIC6.01□□□□□ -1.45
COL8A1P27658 ARSD-AS1-201ENST00000414053 816 ntTSL 2 BASIC6.01□□□□□ -1.45
COL8A1P27658 LINC02542-201ENST00000418567 822 ntTSL 5 BASIC6.01□□□□□ -1.45
COL8A1P27658 AL590135.1-201ENST00000422215 156 ntBASIC6.01□□□□□ -1.45
COL8A1P27658 RPL6-202ENST00000424576 1074 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
COL8A1P27658 AL353777.1-201ENST00000425552 326 ntBASIC6.01□□□□□ -1.45
COL8A1P27658 AC099782.1-201ENST00000425889 474 ntBASIC6.01□□□□□ -1.45
COL8A1P27658 HSPE1P16-201ENST00000426640 348 ntBASIC6.01□□□□□ -1.45
COL8A1P27658 AC018832.1-201ENST00000428171 566 ntTSL 4 BASIC6.01□□□□□ -1.45
COL8A1P27658 RSU1P2-202ENST00000437884 485 ntBASIC6.01□□□□□ -1.45
COL8A1P27658 AC011742.2-201ENST00000443818 352 ntBASIC6.01□□□□□ -1.45
COL8A1P27658 AC079781.2-201ENST00000446424 169 ntBASIC6.01□□□□□ -1.45
COL8A1P27658 SLC25A18P1-201ENST00000449385 454 ntBASIC6.01□□□□□ -1.45
COL8A1P27658 GSTA11P-201ENST00000452866 669 ntBASIC6.01□□□□□ -1.45
COL8A1P27658 PRELID3BP1-201ENST00000457142 540 ntBASIC6.01□□□□□ -1.45
COL8A1P27658 AC023194.2-201ENST00000465398 406 ntBASIC6.01□□□□□ -1.45
COL8A1P27658 AL138787.2-201ENST00000466576 367 ntTSL 3 BASIC6.01□□□□□ -1.45
COL8A1P27658 FXN-205ENST00000498653 856 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
COL8A1P27658 MTCO3P44-201ENST00000510977 541 ntBASIC6.01□□□□□ -1.45
COL8A1P27658 AC026785.3-201ENST00000511182 285 ntTSL 2 BASIC6.01□□□□□ -1.45
COL8A1P27658 AC108043.1-201ENST00000512696 574 ntBASIC6.01□□□□□ -1.45
COL8A1P27658 RNU6-273P-201ENST00000516937 96 ntBASIC6.01□□□□□ -1.45
COL8A1P27658 IGLVI-42-201ENST00000522485 381 ntBASIC6.01□□□□□ -1.45
COL8A1P27658 IGLVV-66-201ENST00000523818 341 ntBASIC6.01□□□□□ -1.45
COL8A1P27658 AC022616.3-201ENST00000523940 148 ntBASIC6.01□□□□□ -1.45
COL8A1P27658 AC018793.4-201ENST00000524542 585 ntAPPRIS P1 BASIC6.01□□□□□ -1.45
COL8A1P27658 AC084337.1-201ENST00000524809 686 ntBASIC6.01□□□□□ -1.45
COL8A1P27658 AC119044.1-202ENST00000548463 339 ntTSL 2 BASIC6.01□□□□□ -1.45
COL8A1P27658 RACGAP1-216ENST00000548961 387 ntTSL 3 BASIC6.01□□□□□ -1.45
COL8A1P27658 AL359232.1-201ENST00000556361 442 ntTSL 3 BASIC6.01□□□□□ -1.45
COL8A1P27658 RBM4-213ENST00000578778 582 ntTSL 4 BASIC6.01□□□□□ -1.45
COL8A1P27658 RN7SL178P-201ENST00000582930 304 ntBASIC6.01□□□□□ -1.45
COL8A1P27658 CBLN2-208ENST00000584764 543 ntTSL 4 BASIC6.01□□□□□ -1.45
COL8A1P27658 AC090771.2-201ENST00000588794 571 ntTSL 3 BASIC6.01□□□□□ -1.45
COL8A1P27658 TEX41-238ENST00000604253 709 ntTSL 5 BASIC6.01□□□□□ -1.45
COL8A1P27658 LINC02098-201ENST00000608492 475 ntTSL 3 BASIC6.01□□□□□ -1.45
COL8A1P27658 SLC38A2-214ENST00000612232 1221 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
COL8A1P27658 MIR8089-201ENST00000620165 82 ntBASIC6.01□□□□□ -1.45
COL8A1P27658 MIR7515HG-257ENST00000625915 852 ntTSL 5 BASIC6.01□□□□□ -1.45
COL8A1P27658 AC018793.1-201ENST00000638166 585 ntAPPRIS P1 BASIC6.01□□□□□ -1.45
COL8A1P27658 NLRC4-204ENST00000404025 3581 ntAPPRIS P1 TSL 5 BASIC6.01□□□□□ -1.45
COL8A1P27658 CLEC9A-201ENST00000355819 1734 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
COL8A1P27658 REST-201ENST00000309042 7300 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
COL8A1P27658 NEMP2-202ENST00000409150 6168 ntAPPRIS P1 TSL 2 BASIC6.01□□□□□ -1.45
COL8A1P27658 THAP12P7-201ENST00000520248 2290 ntBASIC6.01□□□□□ -1.45
COL8A1P27658 DUBR-202ENST00000466734 2737 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
COL8A1P27658 AC019117.1-201ENST00000636929 1462 ntTSL 5 BASIC6.01□□□□□ -1.45
COL8A1P27658 MSL3-206ENST00000380693 2377 ntTSL 2 BASIC6.01□□□□□ -1.45
COL8A1P27658 ZNF573-201ENST00000339503 2014 ntTSL 5 BASIC6.01□□□□□ -1.45
COL8A1P27658 AC006305.1-201ENST00000382897 2558 ntTSL 2 BASIC6.01□□□□□ -1.45
COL8A1P27658 CPNE4-202ENST00000502818 2120 ntTSL 5 BASIC6.01□□□□□ -1.45
COL8A1P27658 SLC2A14-201ENST00000340749 3699 ntAPPRIS ALT2 TSL 2 BASIC6.01□□□□□ -1.45
COL8A1P27658 ESRP1-201ENST00000358397 3756 ntAPPRIS ALT1 TSL 1 (best) BASIC6.01□□□□□ -1.45
COL8A1P27658 BDNF-207ENST00000395986 3979 ntTSL 1 (best) BASIC6□□□□□ -1.45
COL8A1P27658 RPL37-201ENST00000274242 7686 ntAPPRIS P2 TSL 1 (best) BASIC6□□□□□ -1.45
COL8A1P27658 TRIM5-203ENST00000396847 3170 ntTSL 1 (best) BASIC6□□□□□ -1.45
COL8A1P27658 NEXN-202ENST00000334785 2607 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
COL8A1P27658 PLS3-202ENST00000355899 3280 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
COL8A1P27658 MTFR1L-207ENST00000466284 3262 ntTSL 2 BASIC6□□□□□ -1.45
COL8A1P27658 WDR95P-201ENST00000425638 1542 ntBASIC6□□□□□ -1.45
COL8A1P27658 FANCD2-201ENST00000287647 5219 ntAPPRIS P3 TSL 1 (best) BASIC6□□□□□ -1.45
COL8A1P27658 CLCN3-211ENST00000613795 5874 ntTSL 5 BASIC6□□□□□ -1.45
COL8A1P27658 CFHR5-201ENST00000256785 2810 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
COL8A1P27658 CDKL5-201ENST00000379989 3463 ntTSL 1 (best) BASIC6□□□□□ -1.45
COL8A1P27658 CASP10-208ENST00000448480 1603 ntTSL 1 (best) BASIC6□□□□□ -1.45
COL8A1P27658 ZNF714-202ENST00000456283 6812 ntAPPRIS P1 TSL 2 BASIC6□□□□□ -1.45
COL8A1P27658 TXNIP-204ENST00000582401 2926 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
COL8A1P27658 LINC01204-203ENST00000609127 2900 ntTSL 2 BASIC6□□□□□ -1.45
COL8A1P27658 AC119744.1-201ENST00000454746 1715 ntBASIC6□□□□□ -1.45
COL8A1P27658 CYP3A7-CYP3A51P-202ENST00000620220 1704 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
COL8A1P27658 SORBS2-230ENST00000448662 4356 ntTSL 2 BASIC6□□□□□ -1.45
COL8A1P27658 GMFG-201ENST00000253054 616 ntTSL 5 BASIC6□□□□□ -1.45
COL8A1P27658 RNU6-730P-201ENST00000383954 104 ntBASIC6□□□□□ -1.45
COL8A1P27658 MIR188-201ENST00000385034 86 ntBASIC6□□□□□ -1.45
COL8A1P27658 AL031985.1-201ENST00000392713 418 ntBASIC6□□□□□ -1.45
COL8A1P27658 RPL34-202ENST00000394667 441 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
COL8A1P27658 RNU6-101P-201ENST00000410323 104 ntBASIC6□□□□□ -1.45
COL8A1P27658 AL357752.1-201ENST00000412817 349 ntBASIC6□□□□□ -1.45
COL8A1P27658 AC011754.1-201ENST00000415201 491 ntTSL 5 BASIC6□□□□□ -1.45
COL8A1P27658 LINC00428-201ENST00000415620 227 ntTSL 5 BASIC6□□□□□ -1.45
COL8A1P27658 AC099654.1-202ENST00000415836 564 ntTSL 4 BASIC6□□□□□ -1.45
COL8A1P27658 AC114814.2-201ENST00000419195 485 ntBASIC6□□□□□ -1.45
COL8A1P27658 AC093155.2-201ENST00000420734 937 ntBASIC6□□□□□ -1.45
COL8A1P27658 LIX1L-AS1-203ENST00000421764 287 ntTSL 2 BASIC6□□□□□ -1.45
COL8A1P27658 AC005532.1-201ENST00000430266 471 ntTSL 5 BASIC6□□□□□ -1.45
COL8A1P27658 AL049749.1-201ENST00000430281 632 ntTSL 2 BASIC6□□□□□ -1.45
COL8A1P27658 AC114814.1-201ENST00000444926 691 ntTSL 3 BASIC6□□□□□ -1.45
COL8A1P27658 LINC01422-203ENST00000447149 509 ntTSL 4 BASIC6□□□□□ -1.45
COL8A1P27658 PHKA2-AS1-202ENST00000452900 656 ntTSL 1 (best) BASIC6□□□□□ -1.45
COL8A1P27658 SBDSP1-204ENST00000453858 737 ntBASIC6□□□□□ -1.45
COL8A1P27658 TTTY19-201ENST00000453955 269 ntTSL 1 (best) BASIC6□□□□□ -1.45
Retrieved 100 of 98,524 protein–RNA pairs in 81 ms