Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 AC092162.1-201ENST00000432828 434 ntBASIC5.1□□□□□ -1.59
BDNFP23560 AC005154.2-201ENST00000438110 379 ntBASIC5.1□□□□□ -1.59
BDNFP23560 SPAM1-205ENST00000439500 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC5.1□□□□□ -1.59
BDNFP23560 TRIM31-AS1-204ENST00000440874 549 ntTSL 3 BASIC5.1□□□□□ -1.59
BDNFP23560 AL137076.1-201ENST00000441046 551 ntTSL 2 BASIC5.1□□□□□ -1.59
BDNFP23560 AL355870.1-201ENST00000448272 454 ntTSL 3 BASIC5.1□□□□□ -1.59
BDNFP23560 LINC00393-202ENST00000452852 485 ntTSL 3 BASIC5.1□□□□□ -1.59
BDNFP23560 AL356981.1-201ENST00000454879 684 ntBASIC5.1□□□□□ -1.59
BDNFP23560 RPS5P7-201ENST00000456664 608 ntBASIC5.1□□□□□ -1.59
BDNFP23560 ZBTB8OS-205ENST00000465588 548 ntTSL 2 BASIC5.1□□□□□ -1.59
BDNFP23560 RPS29P22-201ENST00000472363 168 ntBASIC5.1□□□□□ -1.59
BDNFP23560 COX6B1P2-201ENST00000489624 230 ntBASIC5.1□□□□□ -1.59
BDNFP23560 AC073073.1-201ENST00000493920 463 ntBASIC5.1□□□□□ -1.59
BDNFP23560 AC008897.1-201ENST00000494006 347 ntBASIC5.1□□□□□ -1.59
BDNFP23560 RN7SL558P-201ENST00000497468 299 ntBASIC5.1□□□□□ -1.59
BDNFP23560 AC108145.1-201ENST00000503770 153 ntBASIC5.1□□□□□ -1.59
BDNFP23560 AC114741.1-201ENST00000504357 464 ntTSL 2 BASIC5.1□□□□□ -1.59
BDNFP23560 CRISP1-203ENST00000505118 1296 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
BDNFP23560 AC093725.2-201ENST00000507808 356 ntTSL 2 BASIC5.1□□□□□ -1.59
BDNFP23560 PRELID3BP4-201ENST00000515476 571 ntBASIC5.1□□□□□ -1.59
BDNFP23560 Y_RNA.719-201ENST00000517156 106 ntBASIC5.1□□□□□ -1.59
BDNFP23560 OPRM1-223ENST00000524163 1251 ntAPPRIS ALT1 TSL 1 (best) BASIC5.1□□□□□ -1.59
BDNFP23560 CASP1-212ENST00000531166 300 ntTSL 5 BASIC5.1□□□□□ -1.59
BDNFP23560 ATXN3-215ENST00000532032 1191 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
BDNFP23560 CACNA1C-IT2-201ENST00000541871 589 ntTSL 2 BASIC5.1□□□□□ -1.59
BDNFP23560 BNIP3P1-201ENST00000547295 580 ntBASIC5.1□□□□□ -1.59
BDNFP23560 LINC02240-201ENST00000564199 1336 ntTSL 2 BASIC5.1□□□□□ -1.59
BDNFP23560 C1QBP-206ENST00000574444 901 ntTSL 3 BASIC5.1□□□□□ -1.59
BDNFP23560 AC005154.1-213ENST00000578572 445 ntTSL 3 BASIC5.1□□□□□ -1.59
BDNFP23560 AC002091.1-201ENST00000578788 557 ntTSL 2 BASIC5.1□□□□□ -1.59
BDNFP23560 SRD5A3-AS1-209ENST00000598819 552 ntTSL 5 BASIC5.1□□□□□ -1.59
BDNFP23560 AC104785.1-201ENST00000603220 588 ntBASIC5.1□□□□□ -1.59
BDNFP23560 MIR6748-201ENST00000610433 71 ntBASIC5.1□□□□□ -1.59
BDNFP23560 AL121890.3-201ENST00000618494 516 ntBASIC5.1□□□□□ -1.59
BDNFP23560 AP000648.2-201ENST00000624182 404 ntBASIC5.1□□□□□ -1.59
BDNFP23560 OR1S2-202ENST00000641683 941 ntAPPRIS P1 BASIC5.1□□□□□ -1.59
BDNFP23560 ADGRL3-203ENST00000506700 4838 ntTSL 5 BASIC5.1□□□□□ -1.59
BDNFP23560 SCN3A-209ENST00000639244 8854 ntTSL 5 BASIC5.1□□□□□ -1.59
BDNFP23560 FGF12-204ENST00000445105 5406 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
BDNFP23560 LINC01021-204ENST00000512067 1610 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
BDNFP23560 STAP1-201ENST00000265404 1511 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
BDNFP23560 ABCA13-204ENST00000435803 17184 ntAPPRIS P2 TSL 1 (best) BASIC5.09□□□□□ -1.59
BDNFP23560 ATRX-202ENST00000395603 10218 ntAPPRIS ALT2 TSL 1 (best) BASIC5.09□□□□□ -1.59
BDNFP23560 IL21-201ENST00000264497 629 ntAPPRIS P3 TSL 1 (best) BASIC5.09□□□□□ -1.59
BDNFP23560 OR10A5-201ENST00000299454 1054 ntAPPRIS P1 BASIC5.09□□□□□ -1.59
BDNFP23560 PSG11-201ENST00000306322 990 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
BDNFP23560 RNA5SP167-201ENST00000365461 116 ntBASIC5.09□□□□□ -1.59
BDNFP23560 R3HCC1L-204ENST00000370586 941 ntTSL 3 BASIC5.09□□□□□ -1.59
BDNFP23560 FABP12P1-201ENST00000401911 322 ntBASIC5.09□□□□□ -1.59
BDNFP23560 CACYBP-203ENST00000406752 243 ntTSL 5 BASIC5.09□□□□□ -1.59
BDNFP23560 AC095032.2-201ENST00000414923 418 ntTSL 2 BASIC5.09□□□□□ -1.59
BDNFP23560 RPL26P29-201ENST00000415623 438 ntBASIC5.09□□□□□ -1.59
BDNFP23560 CYCSP10-201ENST00000417973 294 ntBASIC5.09□□□□□ -1.59
BDNFP23560 AC079790.1-201ENST00000420365 507 ntTSL 3 BASIC5.09□□□□□ -1.59
BDNFP23560 AC007403.1-201ENST00000427579 567 ntTSL 4 BASIC5.09□□□□□ -1.59
BDNFP23560 FTH1P6-201ENST00000430768 320 ntBASIC5.09□□□□□ -1.59
BDNFP23560 RPS17P8-201ENST00000434525 335 ntBASIC5.09□□□□□ -1.59
BDNFP23560 AL732323.1-201ENST00000445897 456 ntTSL 3 BASIC5.09□□□□□ -1.59
BDNFP23560 TPTE2P6-203ENST00000450973 649 ntTSL 5 BASIC5.09□□□□□ -1.59
BDNFP23560 AC011196.1-201ENST00000451816 595 ntTSL 2 BASIC5.09□□□□□ -1.59
BDNFP23560 IQCG-204ENST00000453254 1230 ntTSL 2 BASIC5.09□□□□□ -1.59
BDNFP23560 AC006967.1-201ENST00000467608 589 ntBASIC5.09□□□□□ -1.59
BDNFP23560 AC018816.1-205ENST00000489771 509 ntTSL 2 BASIC5.09□□□□□ -1.59
BDNFP23560 AC011005.3-201ENST00000491624 395 ntBASIC5.09□□□□□ -1.59
BDNFP23560 AC104971.1-201ENST00000495117 578 ntBASIC5.09□□□□□ -1.59
BDNFP23560 GYPA-204ENST00000504786 357 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
BDNFP23560 AC087241.1-201ENST00000508615 429 ntTSL 5 BASIC5.09□□□□□ -1.59
BDNFP23560 HMGB3P13-201ENST00000511263 607 ntBASIC5.09□□□□□ -1.59
BDNFP23560 AP001961.1-201ENST00000515782 526 ntTSL 3 BASIC5.09□□□□□ -1.59
BDNFP23560 RNU4-60P-201ENST00000517239 135 ntBASIC5.09□□□□□ -1.59
BDNFP23560 RNU6-709P-201ENST00000517257 104 ntBASIC5.09□□□□□ -1.59
BDNFP23560 IGJP1-201ENST00000522682 475 ntBASIC5.09□□□□□ -1.59
BDNFP23560 AC044810.3-201ENST00000527565 589 ntTSL 3 BASIC5.09□□□□□ -1.59
BDNFP23560 AC114684.1-201ENST00000587659 352 ntTSL 3 BASIC5.09□□□□□ -1.59
BDNFP23560 AL161896.1-201ENST00000597248 508 ntTSL 4 BASIC5.09□□□□□ -1.59
BDNFP23560 RPL21P136-201ENST00000605378 396 ntBASIC5.09□□□□□ -1.59
BDNFP23560 AL023583.1-201ENST00000607518 1143 ntBASIC5.09□□□□□ -1.59
BDNFP23560 AC121761.2-201ENST00000617300 689 ntBASIC5.09□□□□□ -1.59
BDNFP23560 U73479.1-201ENST00000618062 168 ntBASIC5.09□□□□□ -1.59
BDNFP23560 MIR6853-201ENST00000619642 74 ntBASIC5.09□□□□□ -1.59
BDNFP23560 ALG13-230ENST00000623189 458 ntTSL 3 BASIC5.09□□□□□ -1.59
BDNFP23560 AC106730.3-201ENST00000624568 641 ntBASIC5.09□□□□□ -1.59
BDNFP23560 WISP3-211ENST00000639360 1026 ntTSL 5 BASIC5.09□□□□□ -1.59
BDNFP23560 OR2AT4-205ENST00000641931 8357 ntAPPRIS P1 BASIC5.09□□□□□ -1.59
BDNFP23560 C3orf67-AS1-202ENST00000482372 2203 ntTSL 2 BASIC5.09□□□□□ -1.59
BDNFP23560 SLCO1A2-201ENST00000307378 7682 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
BDNFP23560 GRIK2-201ENST00000318991 4317 ntTSL 5 BASIC5.09□□□□□ -1.59
BDNFP23560 C1orf112-203ENST00000413811 2661 ntAPPRIS ALT2 TSL 1 (best) BASIC5.09□□□□□ -1.6
BDNFP23560 AC104623.2-202ENST00000623477 4002 ntBASIC5.08□□□□□ -1.6
BDNFP23560 GABRG2-202ENST00000361925 3767 ntTSL 3 BASIC5.08□□□□□ -1.6
BDNFP23560 STAG2-205ENST00000371160 6045 ntAPPRIS P3 TSL 1 (best) BASIC5.08□□□□□ -1.6
BDNFP23560 C8orf22-201ENST00000303202 1499 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
BDNFP23560 STAG2-203ENST00000371145 4393 ntAPPRIS ALT1 TSL 1 (best) BASIC5.08□□□□□ -1.6
BDNFP23560 SLC26A7-209ENST00000617078 5094 ntTSL 5 BASIC5.08□□□□□ -1.6
BDNFP23560 AC010928.1-201ENST00000592477 1447 ntBASIC5.08□□□□□ -1.6
BDNFP23560 MTND4P8-201ENST00000514997 1362 ntBASIC5.08□□□□□ -1.6
BDNFP23560 CCDC146-201ENST00000285871 3333 ntAPPRIS P2 TSL 1 (best) BASIC5.08□□□□□ -1.6
BDNFP23560 AL731532.2-201ENST00000623542 1953 ntBASIC5.08□□□□□ -1.6
BDNFP23560 EIF1AY-202ENST00000382772 746 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
BDNFP23560 CLYBL-AS1-201ENST00000416009 621 ntTSL 3 BASIC5.08□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 92.4 ms