Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
TRAIPQ9BWF2 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
TRAIPQ9BWF2 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
TRAIPQ9BWF2 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
TRAIPQ9BWF2 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
TRAIPQ9BWF2 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC21.24■□□□□ 0.99
TRAIPQ9BWF2 AC113347.1-201ENST00000413321 391 ntBASIC21.24■□□□□ 0.99
TRAIPQ9BWF2 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
TRAIPQ9BWF2 TMPOP1-202ENST00000424642 1267 ntBASIC21.24■□□□□ 0.99
TRAIPQ9BWF2 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC21.24■□□□□ 0.99
TRAIPQ9BWF2 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC21.24■□□□□ 0.99
TRAIPQ9BWF2 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC21.24■□□□□ 0.99
TRAIPQ9BWF2 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC21.24■□□□□ 0.99
TRAIPQ9BWF2 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
TRAIPQ9BWF2 DUT-205ENST00000558813 769 ntTSL 2 BASIC21.24■□□□□ 0.99
TRAIPQ9BWF2 AP000692.2-201ENST00000608391 879 ntBASIC21.24■□□□□ 0.99
TRAIPQ9BWF2 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC21.24■□□□□ 0.99
TRAIPQ9BWF2 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC21.24■□□□□ 0.99
TRAIPQ9BWF2 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
TRAIPQ9BWF2 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
TRAIPQ9BWF2 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC21.24■□□□□ 0.99
TRAIPQ9BWF2 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
TRAIPQ9BWF2 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC21.24■□□□□ 0.99
TRAIPQ9BWF2 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC21.24■□□□□ 0.99
TRAIPQ9BWF2 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
TRAIPQ9BWF2 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
TRAIPQ9BWF2 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC21.23■□□□□ 0.99
TRAIPQ9BWF2 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
TRAIPQ9BWF2 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
TRAIPQ9BWF2 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC21.23■□□□□ 0.99
TRAIPQ9BWF2 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC21.23■□□□□ 0.99
TRAIPQ9BWF2 GOLGA2P11-201ENST00000562660 1621 ntBASIC21.23■□□□□ 0.99
TRAIPQ9BWF2 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
TRAIPQ9BWF2 PCDHAC2-203ENST00000615316 3011 ntBASIC21.23■□□□□ 0.99
TRAIPQ9BWF2 TSPY14P-201ENST00000303979 915 ntBASIC21.23■□□□□ 0.99
TRAIPQ9BWF2 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
TRAIPQ9BWF2 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
TRAIPQ9BWF2 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
TRAIPQ9BWF2 RN7SL850P-201ENST00000579959 291 ntBASIC21.23■□□□□ 0.99
TRAIPQ9BWF2 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC21.23■□□□□ 0.99
TRAIPQ9BWF2 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
TRAIPQ9BWF2 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
TRAIPQ9BWF2 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
TRAIPQ9BWF2 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
TRAIPQ9BWF2 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC21.23■□□□□ 0.99
TRAIPQ9BWF2 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
TRAIPQ9BWF2 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC21.23■□□□□ 0.99
TRAIPQ9BWF2 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
TRAIPQ9BWF2 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
TRAIPQ9BWF2 RCC2P6-201ENST00000526625 1557 ntBASIC21.23■□□□□ 0.99
TRAIPQ9BWF2 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC21.22■□□□□ 0.99
TRAIPQ9BWF2 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC21.22■□□□□ 0.99
TRAIPQ9BWF2 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
TRAIPQ9BWF2 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC21.22■□□□□ 0.99
TRAIPQ9BWF2 AC073508.3-201ENST00000619697 1419 ntBASIC21.22■□□□□ 0.99
TRAIPQ9BWF2 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
TRAIPQ9BWF2 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
TRAIPQ9BWF2 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
TRAIPQ9BWF2 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC21.22■□□□□ 0.99
TRAIPQ9BWF2 GLRB-205ENST00000512619 728 ntTSL 3 BASIC21.22■□□□□ 0.99
TRAIPQ9BWF2 EGLN1P1-201ENST00000531623 762 ntBASIC21.22■□□□□ 0.99
TRAIPQ9BWF2 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC21.22■□□□□ 0.99
TRAIPQ9BWF2 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
TRAIPQ9BWF2 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC21.22■□□□□ 0.99
TRAIPQ9BWF2 AL512408.1-201ENST00000569378 2000 ntBASIC21.22■□□□□ 0.99
TRAIPQ9BWF2 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
TRAIPQ9BWF2 MOK-225ENST00000522867 1883 ntTSL 5 BASIC21.22■□□□□ 0.99
TRAIPQ9BWF2 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC21.21■□□□□ 0.99
TRAIPQ9BWF2 AFG3L1P-217ENST00000557444 2447 ntBASIC21.21■□□□□ 0.99
TRAIPQ9BWF2 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
TRAIPQ9BWF2 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
TRAIPQ9BWF2 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
TRAIPQ9BWF2 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
TRAIPQ9BWF2 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
TRAIPQ9BWF2 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC21.21■□□□□ 0.99
TRAIPQ9BWF2 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC21.21■□□□□ 0.99
TRAIPQ9BWF2 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
TRAIPQ9BWF2 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
TRAIPQ9BWF2 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC21.21■□□□□ 0.99
TRAIPQ9BWF2 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC21.21■□□□□ 0.99
TRAIPQ9BWF2 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
TRAIPQ9BWF2 PRR31-201ENST00000371629 978 ntTSL 2 BASIC21.21■□□□□ 0.99
TRAIPQ9BWF2 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC21.21■□□□□ 0.99
TRAIPQ9BWF2 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
TRAIPQ9BWF2 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
TRAIPQ9BWF2 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC21.21■□□□□ 0.99
TRAIPQ9BWF2 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC21.21■□□□□ 0.99
TRAIPQ9BWF2 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
TRAIPQ9BWF2 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
TRAIPQ9BWF2 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC21.21■□□□□ 0.99
TRAIPQ9BWF2 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
TRAIPQ9BWF2 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
TRAIPQ9BWF2 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC21.21■□□□□ 0.99
TRAIPQ9BWF2 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.99
TRAIPQ9BWF2 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
TRAIPQ9BWF2 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC21.2■□□□□ 0.98
TRAIPQ9BWF2 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
TRAIPQ9BWF2 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
TRAIPQ9BWF2 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
TRAIPQ9BWF2 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms