Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC15.01□□□□□ -0.01
CCDC140Q96MF4 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
CCDC140Q96MF4 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
CCDC140Q96MF4 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC15.01□□□□□ -0.01
CCDC140Q96MF4 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
CCDC140Q96MF4 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC15.01□□□□□ -0.01
CCDC140Q96MF4 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
CCDC140Q96MF4 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
CCDC140Q96MF4 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC15□□□□□ -0.01
CCDC140Q96MF4 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC15□□□□□ -0.01
CCDC140Q96MF4 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC15□□□□□ -0.01
CCDC140Q96MF4 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC15□□□□□ -0.01
CCDC140Q96MF4 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC15□□□□□ -0.01
CCDC140Q96MF4 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC15□□□□□ -0.01
CCDC140Q96MF4 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
CCDC140Q96MF4 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
CCDC140Q96MF4 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
CCDC140Q96MF4 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC15□□□□□ -0.01
CCDC140Q96MF4 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC15□□□□□ -0.01
CCDC140Q96MF4 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
CCDC140Q96MF4 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC15□□□□□ -0.01
CCDC140Q96MF4 PRORSD1P-201ENST00000295112 541 ntBASIC15□□□□□ -0.01
CCDC140Q96MF4 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC15□□□□□ -0.01
CCDC140Q96MF4 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
CCDC140Q96MF4 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC15□□□□□ -0.01
CCDC140Q96MF4 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC15□□□□□ -0.01
CCDC140Q96MF4 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC15□□□□□ -0.01
CCDC140Q96MF4 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC15□□□□□ -0.01
CCDC140Q96MF4 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC15□□□□□ -0.01
CCDC140Q96MF4 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC15□□□□□ -0.01
CCDC140Q96MF4 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC15□□□□□ -0.01
CCDC140Q96MF4 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
CCDC140Q96MF4 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC15□□□□□ -0.01
CCDC140Q96MF4 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
CCDC140Q96MF4 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
CCDC140Q96MF4 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
CCDC140Q96MF4 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC15□□□□□ -0.01
CCDC140Q96MF4 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
CCDC140Q96MF4 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC15□□□□□ -0.01
CCDC140Q96MF4 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
CCDC140Q96MF4 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC15□□□□□ -0.01
CCDC140Q96MF4 LINC01465-201ENST00000408887 1940 ntBASIC15□□□□□ -0.01
CCDC140Q96MF4 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC15□□□□□ -0.01
CCDC140Q96MF4 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
CCDC140Q96MF4 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC14.99□□□□□ -0.01
CCDC140Q96MF4 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
CCDC140Q96MF4 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC14.99□□□□□ -0.01
CCDC140Q96MF4 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
CCDC140Q96MF4 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
CCDC140Q96MF4 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC14.99□□□□□ -0.01
CCDC140Q96MF4 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
CCDC140Q96MF4 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC14.99□□□□□ -0.01
CCDC140Q96MF4 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
CCDC140Q96MF4 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC14.99□□□□□ -0.01
CCDC140Q96MF4 ABHD17AP1-201ENST00000358206 933 ntBASIC14.99□□□□□ -0.01
CCDC140Q96MF4 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC14.99□□□□□ -0.01
CCDC140Q96MF4 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC14.99□□□□□ -0.01
CCDC140Q96MF4 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
CCDC140Q96MF4 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC14.99□□□□□ -0.01
CCDC140Q96MF4 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC14.99□□□□□ -0.01
CCDC140Q96MF4 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
CCDC140Q96MF4 HLA-A-209ENST00000638375 975 ntBASIC14.99□□□□□ -0.01
CCDC140Q96MF4 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
CCDC140Q96MF4 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC14.99□□□□□ -0.01
CCDC140Q96MF4 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC14.99□□□□□ -0.01
CCDC140Q96MF4 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC14.99□□□□□ -0.01
CCDC140Q96MF4 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC14.99□□□□□ -0.01
CCDC140Q96MF4 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC14.99□□□□□ -0.01
CCDC140Q96MF4 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC14.99□□□□□ -0.01
CCDC140Q96MF4 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
CCDC140Q96MF4 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
CCDC140Q96MF4 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC14.99□□□□□ -0.01
CCDC140Q96MF4 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
CCDC140Q96MF4 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC14.99□□□□□ -0.01
CCDC140Q96MF4 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC14.99□□□□□ -0.01
CCDC140Q96MF4 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
CCDC140Q96MF4 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC14.99□□□□□ -0.01
CCDC140Q96MF4 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC14.98□□□□□ -0.01
CCDC140Q96MF4 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC14.98□□□□□ -0.01
CCDC140Q96MF4 PTGES2-AS1-201ENST00000443493 2100 ntBASIC14.98□□□□□ -0.01
CCDC140Q96MF4 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC14.98□□□□□ -0.01
CCDC140Q96MF4 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC14.98□□□□□ -0.01
CCDC140Q96MF4 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
CCDC140Q96MF4 TEX21P-204ENST00000641479 1693 ntBASIC14.98□□□□□ -0.01
CCDC140Q96MF4 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
CCDC140Q96MF4 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC14.98□□□□□ -0.01
CCDC140Q96MF4 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
CCDC140Q96MF4 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
CCDC140Q96MF4 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC14.98□□□□□ -0.01
CCDC140Q96MF4 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC14.98□□□□□ -0.01
CCDC140Q96MF4 AL359736.2-201ENST00000621992 437 ntBASIC14.98□□□□□ -0.01
CCDC140Q96MF4 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC14.98□□□□□ -0.01
CCDC140Q96MF4 CABP2-204ENST00000636477 941 ntTSL 5 BASIC14.98□□□□□ -0.01
CCDC140Q96MF4 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
CCDC140Q96MF4 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC14.98□□□□□ -0.01
CCDC140Q96MF4 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
CCDC140Q96MF4 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
CCDC140Q96MF4 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC14.98□□□□□ -0.01
CCDC140Q96MF4 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
CCDC140Q96MF4 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC14.98□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 17.6 ms