Protein–RNA interactions for Protein: Q96JI7

SPG11, Spatacsin, humanhuman

Predictions only

Length 2,443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11Q96JI7 AP002383.4-201ENST00000442518 975 ntBASIC16.45■□□□□ 0.22
SPG11Q96JI7 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC16.45■□□□□ 0.22
SPG11Q96JI7 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
SPG11Q96JI7 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
SPG11Q96JI7 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SPG11Q96JI7 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
SPG11Q96JI7 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
SPG11Q96JI7 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
SPG11Q96JI7 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
SPG11Q96JI7 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC16.44■□□□□ 0.22
SPG11Q96JI7 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
SPG11Q96JI7 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
SPG11Q96JI7 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
SPG11Q96JI7 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC16.44■□□□□ 0.22
SPG11Q96JI7 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC16.44■□□□□ 0.22
SPG11Q96JI7 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC16.44■□□□□ 0.22
SPG11Q96JI7 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC16.44■□□□□ 0.22
SPG11Q96JI7 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
SPG11Q96JI7 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
SPG11Q96JI7 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC16.44■□□□□ 0.22
SPG11Q96JI7 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
SPG11Q96JI7 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
SPG11Q96JI7 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC16.44■□□□□ 0.22
SPG11Q96JI7 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
SPG11Q96JI7 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
SPG11Q96JI7 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
SPG11Q96JI7 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
SPG11Q96JI7 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC16.44■□□□□ 0.22
SPG11Q96JI7 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
SPG11Q96JI7 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
SPG11Q96JI7 SPDYE15P-201ENST00000424157 909 ntBASIC16.44■□□□□ 0.22
SPG11Q96JI7 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC16.44■□□□□ 0.22
SPG11Q96JI7 TBCB-205ENST00000585746 875 ntTSL 3 BASIC16.44■□□□□ 0.22
SPG11Q96JI7 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC16.43■□□□□ 0.22
SPG11Q96JI7 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
SPG11Q96JI7 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
SPG11Q96JI7 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC16.43■□□□□ 0.22
SPG11Q96JI7 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
SPG11Q96JI7 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC16.43■□□□□ 0.22
SPG11Q96JI7 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC16.43■□□□□ 0.22
SPG11Q96JI7 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
SPG11Q96JI7 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
SPG11Q96JI7 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
SPG11Q96JI7 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC16.43■□□□□ 0.22
SPG11Q96JI7 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC16.43■□□□□ 0.22
SPG11Q96JI7 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC16.43■□□□□ 0.22
SPG11Q96JI7 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
SPG11Q96JI7 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
SPG11Q96JI7 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
SPG11Q96JI7 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC16.43■□□□□ 0.22
SPG11Q96JI7 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC16.43■□□□□ 0.22
SPG11Q96JI7 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
SPG11Q96JI7 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC16.43■□□□□ 0.22
SPG11Q96JI7 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC16.43■□□□□ 0.22
SPG11Q96JI7 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
SPG11Q96JI7 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
SPG11Q96JI7 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC16.43■□□□□ 0.22
SPG11Q96JI7 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
SPG11Q96JI7 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC16.43■□□□□ 0.22
SPG11Q96JI7 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC16.43■□□□□ 0.22
SPG11Q96JI7 GCSHP2-201ENST00000560971 527 ntBASIC16.43■□□□□ 0.22
SPG11Q96JI7 AL732292.2-201ENST00000609649 430 ntBASIC16.43■□□□□ 0.22
SPG11Q96JI7 DPP3P2-201ENST00000416030 1696 ntBASIC16.42■□□□□ 0.22
SPG11Q96JI7 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
SPG11Q96JI7 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SPG11Q96JI7 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SPG11Q96JI7 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC16.42■□□□□ 0.22
SPG11Q96JI7 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SPG11Q96JI7 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC16.42■□□□□ 0.22
SPG11Q96JI7 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
SPG11Q96JI7 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC16.42■□□□□ 0.22
SPG11Q96JI7 SPDYE13P-201ENST00000445314 798 ntBASIC16.42■□□□□ 0.22
SPG11Q96JI7 EMBP1-201ENST00000458200 901 ntBASIC16.42■□□□□ 0.22
SPG11Q96JI7 AC092597.1-201ENST00000487352 616 ntBASIC16.42■□□□□ 0.22
SPG11Q96JI7 ZNF444P1-201ENST00000559497 298 ntBASIC16.42■□□□□ 0.22
SPG11Q96JI7 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
SPG11Q96JI7 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC16.42■□□□□ 0.22
SPG11Q96JI7 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
SPG11Q96JI7 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC16.42■□□□□ 0.22
SPG11Q96JI7 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
SPG11Q96JI7 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
SPG11Q96JI7 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
SPG11Q96JI7 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
SPG11Q96JI7 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
SPG11Q96JI7 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC16.41■□□□□ 0.22
SPG11Q96JI7 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
SPG11Q96JI7 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
SPG11Q96JI7 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC16.41■□□□□ 0.22
SPG11Q96JI7 NT5C-210ENST00000582160 860 ntTSL 2 BASIC16.41■□□□□ 0.22
SPG11Q96JI7 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC16.41■□□□□ 0.22
SPG11Q96JI7 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
SPG11Q96JI7 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC16.41■□□□□ 0.22
SPG11Q96JI7 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
SPG11Q96JI7 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC16.41■□□□□ 0.22
SPG11Q96JI7 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC16.41■□□□□ 0.22
SPG11Q96JI7 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
SPG11Q96JI7 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC16.41■□□□□ 0.22
SPG11Q96JI7 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
SPG11Q96JI7 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC16.41■□□□□ 0.22
SPG11Q96JI7 AC104692.2-201ENST00000603054 253 ntBASIC16.41■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 23.2 ms