Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC21.95■■□□□ 1.1
ERCC4Q92889 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
ERCC4Q92889 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC21.95■■□□□ 1.1
ERCC4Q92889 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
ERCC4Q92889 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC21.95■■□□□ 1.1
ERCC4Q92889 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
ERCC4Q92889 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC21.95■■□□□ 1.1
ERCC4Q92889 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
ERCC4Q92889 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC21.95■■□□□ 1.1
ERCC4Q92889 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
ERCC4Q92889 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC21.95■■□□□ 1.1
ERCC4Q92889 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
ERCC4Q92889 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC21.95■■□□□ 1.1
ERCC4Q92889 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC21.95■■□□□ 1.1
ERCC4Q92889 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
ERCC4Q92889 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
ERCC4Q92889 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
ERCC4Q92889 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC21.94■■□□□ 1.1
ERCC4Q92889 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
ERCC4Q92889 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
ERCC4Q92889 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
ERCC4Q92889 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
ERCC4Q92889 MFF-205ENST00000354503 1085 ntTSL 2 BASIC21.94■■□□□ 1.1
ERCC4Q92889 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
ERCC4Q92889 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC21.94■■□□□ 1.1
ERCC4Q92889 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC21.94■■□□□ 1.1
ERCC4Q92889 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC21.94■■□□□ 1.1
ERCC4Q92889 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
ERCC4Q92889 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
ERCC4Q92889 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
ERCC4Q92889 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC21.94■■□□□ 1.1
ERCC4Q92889 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
ERCC4Q92889 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC21.94■■□□□ 1.1
ERCC4Q92889 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC21.94■■□□□ 1.1
ERCC4Q92889 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC21.94■■□□□ 1.1
ERCC4Q92889 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
ERCC4Q92889 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
ERCC4Q92889 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC21.94■■□□□ 1.1
ERCC4Q92889 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC21.94■■□□□ 1.1
ERCC4Q92889 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
ERCC4Q92889 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC21.93■■□□□ 1.1
ERCC4Q92889 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
ERCC4Q92889 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC21.93■■□□□ 1.1
ERCC4Q92889 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC21.93■■□□□ 1.1
ERCC4Q92889 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
ERCC4Q92889 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
ERCC4Q92889 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
ERCC4Q92889 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
ERCC4Q92889 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC21.93■■□□□ 1.1
ERCC4Q92889 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC21.93■■□□□ 1.1
ERCC4Q92889 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC21.93■■□□□ 1.1
ERCC4Q92889 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
ERCC4Q92889 METTL15-202ENST00000403099 795 ntTSL 5 BASIC21.93■■□□□ 1.1
ERCC4Q92889 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC21.93■■□□□ 1.1
ERCC4Q92889 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC21.93■■□□□ 1.1
ERCC4Q92889 TFP1-202ENST00000475455 1573 ntBASIC21.93■■□□□ 1.1
ERCC4Q92889 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC21.93■■□□□ 1.1
ERCC4Q92889 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
ERCC4Q92889 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC21.93■■□□□ 1.1
ERCC4Q92889 AC007613.1-201ENST00000572811 2597 ntBASIC21.93■■□□□ 1.1
ERCC4Q92889 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC21.93■■□□□ 1.1
ERCC4Q92889 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC21.93■■□□□ 1.1
ERCC4Q92889 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
ERCC4Q92889 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC21.93■■□□□ 1.1
ERCC4Q92889 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC21.93■■□□□ 1.1
ERCC4Q92889 AC104581.1-202ENST00000635932 2618 ntBASIC21.93■■□□□ 1.1
ERCC4Q92889 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC21.92■■□□□ 1.1
ERCC4Q92889 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC21.92■■□□□ 1.1
ERCC4Q92889 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC21.92■■□□□ 1.1
ERCC4Q92889 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC21.92■■□□□ 1.1
ERCC4Q92889 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
ERCC4Q92889 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC21.92■■□□□ 1.1
ERCC4Q92889 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC21.92■■□□□ 1.1
ERCC4Q92889 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC21.92■■□□□ 1.1
ERCC4Q92889 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
ERCC4Q92889 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC21.92■■□□□ 1.1
ERCC4Q92889 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC21.92■■□□□ 1.1
ERCC4Q92889 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC21.92■■□□□ 1.1
ERCC4Q92889 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC21.92■■□□□ 1.1
ERCC4Q92889 AC006557.6-201ENST00000623071 864 ntBASIC21.92■■□□□ 1.1
ERCC4Q92889 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC21.92■■□□□ 1.1
ERCC4Q92889 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC21.92■■□□□ 1.1
ERCC4Q92889 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC21.92■■□□□ 1.1
ERCC4Q92889 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
ERCC4Q92889 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC21.92■■□□□ 1.1
ERCC4Q92889 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC21.92■■□□□ 1.1
ERCC4Q92889 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC21.92■■□□□ 1.1
ERCC4Q92889 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC21.92■■□□□ 1.1
ERCC4Q92889 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
ERCC4Q92889 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC21.91■■□□□ 1.1
ERCC4Q92889 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
ERCC4Q92889 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
ERCC4Q92889 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
ERCC4Q92889 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
ERCC4Q92889 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC21.91■■□□□ 1.1
ERCC4Q92889 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC21.91■■□□□ 1.1
ERCC4Q92889 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
ERCC4Q92889 DLX3-202ENST00000512495 834 ntTSL 2 BASIC21.91■■□□□ 1.1
ERCC4Q92889 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
ERCC4Q92889 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
Retrieved 100 of 98,524 protein–RNA pairs in 20.1 ms