Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
LMX1AQ8TE12 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC18.89■□□□□ 0.61
LMX1AQ8TE12 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC18.89■□□□□ 0.61
LMX1AQ8TE12 AC092667.1-201ENST00000434301 2586 ntBASIC18.88■□□□□ 0.61
LMX1AQ8TE12 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
LMX1AQ8TE12 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
LMX1AQ8TE12 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC18.88■□□□□ 0.61
LMX1AQ8TE12 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
LMX1AQ8TE12 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC18.88■□□□□ 0.61
LMX1AQ8TE12 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC18.88■□□□□ 0.61
LMX1AQ8TE12 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC18.88■□□□□ 0.61
LMX1AQ8TE12 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC18.88■□□□□ 0.61
LMX1AQ8TE12 AC010653.2-201ENST00000623505 997 ntBASIC18.88■□□□□ 0.61
LMX1AQ8TE12 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
LMX1AQ8TE12 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
LMX1AQ8TE12 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
LMX1AQ8TE12 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
LMX1AQ8TE12 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC18.88■□□□□ 0.61
LMX1AQ8TE12 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
LMX1AQ8TE12 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC18.88■□□□□ 0.61
LMX1AQ8TE12 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
LMX1AQ8TE12 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
LMX1AQ8TE12 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC18.87■□□□□ 0.61
LMX1AQ8TE12 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC18.87■□□□□ 0.61
LMX1AQ8TE12 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC18.87■□□□□ 0.61
LMX1AQ8TE12 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC18.87■□□□□ 0.61
LMX1AQ8TE12 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
LMX1AQ8TE12 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
LMX1AQ8TE12 TSPY17P-201ENST00000450329 467 ntBASIC18.87■□□□□ 0.61
LMX1AQ8TE12 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC18.87■□□□□ 0.61
LMX1AQ8TE12 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
LMX1AQ8TE12 AC092338.2-201ENST00000568827 1415 ntBASIC18.87■□□□□ 0.61
LMX1AQ8TE12 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC18.87■□□□□ 0.61
LMX1AQ8TE12 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC18.87■□□□□ 0.61
LMX1AQ8TE12 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC18.87■□□□□ 0.61
LMX1AQ8TE12 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC18.87■□□□□ 0.61
LMX1AQ8TE12 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC18.87■□□□□ 0.61
LMX1AQ8TE12 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
LMX1AQ8TE12 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
LMX1AQ8TE12 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC18.86■□□□□ 0.61
LMX1AQ8TE12 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
LMX1AQ8TE12 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
LMX1AQ8TE12 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
LMX1AQ8TE12 KRT8P41-201ENST00000533985 1514 ntBASIC18.86■□□□□ 0.61
LMX1AQ8TE12 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC18.86■□□□□ 0.61
LMX1AQ8TE12 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
LMX1AQ8TE12 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
LMX1AQ8TE12 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC18.86■□□□□ 0.61
LMX1AQ8TE12 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC18.86■□□□□ 0.61
LMX1AQ8TE12 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
LMX1AQ8TE12 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
LMX1AQ8TE12 AC117947.1-201ENST00000427448 529 ntBASIC18.86■□□□□ 0.61
LMX1AQ8TE12 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC18.86■□□□□ 0.61
LMX1AQ8TE12 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC18.86■□□□□ 0.61
LMX1AQ8TE12 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC18.86■□□□□ 0.61
LMX1AQ8TE12 AC139887.4-201ENST00000607877 719 ntBASIC18.86■□□□□ 0.61
LMX1AQ8TE12 AL023803.3-201ENST00000615559 522 ntBASIC18.86■□□□□ 0.61
LMX1AQ8TE12 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
LMX1AQ8TE12 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
LMX1AQ8TE12 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
LMX1AQ8TE12 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
LMX1AQ8TE12 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC18.86■□□□□ 0.61
LMX1AQ8TE12 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC18.86■□□□□ 0.61
LMX1AQ8TE12 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC18.86■□□□□ 0.61
LMX1AQ8TE12 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
LMX1AQ8TE12 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
LMX1AQ8TE12 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC18.85■□□□□ 0.61
LMX1AQ8TE12 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
LMX1AQ8TE12 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC18.85■□□□□ 0.61
LMX1AQ8TE12 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC18.85■□□□□ 0.61
LMX1AQ8TE12 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC18.85■□□□□ 0.61
LMX1AQ8TE12 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
LMX1AQ8TE12 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
LMX1AQ8TE12 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
LMX1AQ8TE12 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
LMX1AQ8TE12 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
LMX1AQ8TE12 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
LMX1AQ8TE12 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
LMX1AQ8TE12 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
LMX1AQ8TE12 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
LMX1AQ8TE12 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
LMX1AQ8TE12 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC18.85■□□□□ 0.61
LMX1AQ8TE12 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC18.85■□□□□ 0.61
LMX1AQ8TE12 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC18.85■□□□□ 0.61
LMX1AQ8TE12 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC18.85■□□□□ 0.61
LMX1AQ8TE12 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
LMX1AQ8TE12 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC18.85■□□□□ 0.61
LMX1AQ8TE12 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
LMX1AQ8TE12 CKBP1-201ENST00000565489 1086 ntBASIC18.85■□□□□ 0.61
LMX1AQ8TE12 AL353719.1-201ENST00000566847 864 ntBASIC18.85■□□□□ 0.61
LMX1AQ8TE12 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC18.85■□□□□ 0.61
LMX1AQ8TE12 AL138966.2-201ENST00000621997 464 ntBASIC18.85■□□□□ 0.61
LMX1AQ8TE12 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC18.85■□□□□ 0.61
LMX1AQ8TE12 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
LMX1AQ8TE12 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
LMX1AQ8TE12 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
LMX1AQ8TE12 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
LMX1AQ8TE12 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
LMX1AQ8TE12 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC18.85■□□□□ 0.61
LMX1AQ8TE12 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms