Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC23.76■■□□□ 1.39
USP48Q86UV5 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC23.76■■□□□ 1.39
USP48Q86UV5 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC23.76■■□□□ 1.39
USP48Q86UV5 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC23.76■■□□□ 1.39
USP48Q86UV5 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
USP48Q86UV5 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC23.76■■□□□ 1.39
USP48Q86UV5 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
USP48Q86UV5 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
USP48Q86UV5 MED25-212ENST00000618715 1467 ntTSL 5 BASIC23.75■■□□□ 1.39
USP48Q86UV5 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
USP48Q86UV5 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
USP48Q86UV5 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC23.75■■□□□ 1.39
USP48Q86UV5 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC23.75■■□□□ 1.39
USP48Q86UV5 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC23.75■■□□□ 1.39
USP48Q86UV5 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC23.75■■□□□ 1.39
USP48Q86UV5 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC23.75■■□□□ 1.39
USP48Q86UV5 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC23.75■■□□□ 1.39
USP48Q86UV5 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
USP48Q86UV5 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC23.75■■□□□ 1.39
USP48Q86UV5 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
USP48Q86UV5 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC23.75■■□□□ 1.39
USP48Q86UV5 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
USP48Q86UV5 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
USP48Q86UV5 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC23.74■■□□□ 1.39
USP48Q86UV5 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
USP48Q86UV5 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
USP48Q86UV5 COPE-203ENST00000351079 907 ntTSL 2 BASIC23.74■■□□□ 1.39
USP48Q86UV5 CRYGFP-201ENST00000418459 633 ntBASIC23.74■■□□□ 1.39
USP48Q86UV5 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
USP48Q86UV5 AP005242.2-201ENST00000580065 1175 ntBASIC23.74■■□□□ 1.39
USP48Q86UV5 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC23.74■■□□□ 1.39
USP48Q86UV5 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC23.74■■□□□ 1.39
USP48Q86UV5 ABBA01031674.1-201ENST00000635145 728 ntBASIC23.74■■□□□ 1.39
USP48Q86UV5 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
USP48Q86UV5 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
USP48Q86UV5 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC23.74■■□□□ 1.39
USP48Q86UV5 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC23.74■■□□□ 1.39
USP48Q86UV5 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
USP48Q86UV5 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC23.74■■□□□ 1.39
USP48Q86UV5 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC23.74■■□□□ 1.39
USP48Q86UV5 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC23.73■■□□□ 1.39
USP48Q86UV5 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
USP48Q86UV5 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC23.73■■□□□ 1.39
USP48Q86UV5 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
USP48Q86UV5 AC117947.1-201ENST00000427448 529 ntBASIC23.73■■□□□ 1.39
USP48Q86UV5 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
USP48Q86UV5 LINC01238-205ENST00000567549 1107 ntBASIC23.73■■□□□ 1.39
USP48Q86UV5 FAM87A-204ENST00000613235 858 ntBASIC23.73■■□□□ 1.39
USP48Q86UV5 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC23.73■■□□□ 1.39
USP48Q86UV5 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
USP48Q86UV5 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
USP48Q86UV5 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
USP48Q86UV5 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
USP48Q86UV5 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC23.73■■□□□ 1.39
USP48Q86UV5 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC23.73■■□□□ 1.39
USP48Q86UV5 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
USP48Q86UV5 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC23.73■■□□□ 1.39
USP48Q86UV5 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC23.73■■□□□ 1.39
USP48Q86UV5 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC23.73■■□□□ 1.39
USP48Q86UV5 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC23.73■■□□□ 1.39
USP48Q86UV5 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
USP48Q86UV5 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
USP48Q86UV5 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
USP48Q86UV5 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC23.72■■□□□ 1.39
USP48Q86UV5 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC23.72■■□□□ 1.39
USP48Q86UV5 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
USP48Q86UV5 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC23.72■■□□□ 1.39
USP48Q86UV5 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
USP48Q86UV5 AL031133.1-201ENST00000406807 723 ntBASIC23.72■■□□□ 1.39
USP48Q86UV5 PPP1R14BP5-201ENST00000440334 435 ntBASIC23.72■■□□□ 1.39
USP48Q86UV5 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
USP48Q86UV5 AC011506.1-201ENST00000474329 610 ntBASIC23.72■■□□□ 1.39
USP48Q86UV5 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC23.72■■□□□ 1.39
USP48Q86UV5 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC23.72■■□□□ 1.39
USP48Q86UV5 MIR2861-201ENST00000636310 90 ntBASIC23.72■■□□□ 1.39
USP48Q86UV5 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC23.72■■□□□ 1.39
USP48Q86UV5 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC23.72■■□□□ 1.39
USP48Q86UV5 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
USP48Q86UV5 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC23.72■■□□□ 1.39
USP48Q86UV5 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC23.72■■□□□ 1.39
USP48Q86UV5 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
USP48Q86UV5 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
USP48Q86UV5 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
USP48Q86UV5 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
USP48Q86UV5 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC23.71■■□□□ 1.39
USP48Q86UV5 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
USP48Q86UV5 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC23.71■■□□□ 1.39
USP48Q86UV5 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC23.71■■□□□ 1.39
USP48Q86UV5 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC23.71■■□□□ 1.39
USP48Q86UV5 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
USP48Q86UV5 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC23.71■■□□□ 1.39
USP48Q86UV5 AC091390.4-202ENST00000476426 537 ntBASIC23.71■■□□□ 1.39
USP48Q86UV5 AC128688.1-201ENST00000487626 519 ntBASIC23.71■■□□□ 1.39
USP48Q86UV5 AC097488.1-201ENST00000507834 756 ntBASIC23.71■■□□□ 1.39
USP48Q86UV5 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC23.71■■□□□ 1.39
USP48Q86UV5 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC23.71■■□□□ 1.39
USP48Q86UV5 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC23.71■■□□□ 1.39
USP48Q86UV5 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC23.71■■□□□ 1.39
USP48Q86UV5 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
USP48Q86UV5 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 21.1 ms