Protein–RNA interactions for Protein: Q5T4S7

UBR4, E3 ubiquitin-protein ligase UBR4, humanhuman

Predictions only

Length 5,183 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4Q5T4S7 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC10.67□□□□□ -0.7
UBR4Q5T4S7 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC10.67□□□□□ -0.7
UBR4Q5T4S7 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC10.67□□□□□ -0.7
UBR4Q5T4S7 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC10.66□□□□□ -0.7
UBR4Q5T4S7 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC10.66□□□□□ -0.7
UBR4Q5T4S7 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC10.66□□□□□ -0.7
UBR4Q5T4S7 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC10.66□□□□□ -0.7
UBR4Q5T4S7 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
UBR4Q5T4S7 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC10.66□□□□□ -0.7
UBR4Q5T4S7 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC10.66□□□□□ -0.7
UBR4Q5T4S7 AC009533.2-201ENST00000543664 586 ntBASIC10.66□□□□□ -0.7
UBR4Q5T4S7 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
UBR4Q5T4S7 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC10.66□□□□□ -0.7
UBR4Q5T4S7 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC10.66□□□□□ -0.7
UBR4Q5T4S7 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC10.66□□□□□ -0.7
UBR4Q5T4S7 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
UBR4Q5T4S7 TMEM179-206ENST00000616017 1645 ntBASIC10.66□□□□□ -0.7
UBR4Q5T4S7 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
UBR4Q5T4S7 MCHR2-202ENST00000369212 1311 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
UBR4Q5T4S7 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
UBR4Q5T4S7 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC10.66□□□□□ -0.7
UBR4Q5T4S7 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
UBR4Q5T4S7 HMBS-216ENST00000543090 1347 ntTSL 5 BASIC10.66□□□□□ -0.7
UBR4Q5T4S7 STX5-203ENST00000394690 1568 ntTSL 5 BASIC10.66□□□□□ -0.7
UBR4Q5T4S7 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
UBR4Q5T4S7 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
UBR4Q5T4S7 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC10.66□□□□□ -0.7
UBR4Q5T4S7 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC10.66□□□□□ -0.7
UBR4Q5T4S7 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC10.66□□□□□ -0.7
UBR4Q5T4S7 NOP2-220ENST00000545915 630 ntTSL 2 BASIC10.66□□□□□ -0.7
UBR4Q5T4S7 AC099336.1-202ENST00000602961 463 ntBASIC10.66□□□□□ -0.7
UBR4Q5T4S7 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC10.66□□□□□ -0.7
UBR4Q5T4S7 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC10.66□□□□□ -0.7
UBR4Q5T4S7 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC10.65□□□□□ -0.7
UBR4Q5T4S7 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC10.65□□□□□ -0.7
UBR4Q5T4S7 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC10.65□□□□□ -0.7
UBR4Q5T4S7 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC10.65□□□□□ -0.7
UBR4Q5T4S7 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
UBR4Q5T4S7 ELFN1-AS1-202ENST00000453348 637 ntTSL 1 (best) BASIC10.65□□□□□ -0.7
UBR4Q5T4S7 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC10.65□□□□□ -0.7
UBR4Q5T4S7 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC10.65□□□□□ -0.7
UBR4Q5T4S7 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC10.65□□□□□ -0.7
UBR4Q5T4S7 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC10.65□□□□□ -0.7
UBR4Q5T4S7 HNRNPDP1-201ENST00000439535 754 ntBASIC10.65□□□□□ -0.7
UBR4Q5T4S7 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC10.65□□□□□ -0.7
UBR4Q5T4S7 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC10.65□□□□□ -0.7
UBR4Q5T4S7 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC10.65□□□□□ -0.7
UBR4Q5T4S7 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC10.65□□□□□ -0.7
UBR4Q5T4S7 AP006587.1-201ENST00000534129 1502 ntBASIC10.65□□□□□ -0.7
UBR4Q5T4S7 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC10.65□□□□□ -0.7
UBR4Q5T4S7 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
UBR4Q5T4S7 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC10.65□□□□□ -0.7
UBR4Q5T4S7 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC10.65□□□□□ -0.7
UBR4Q5T4S7 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC10.65□□□□□ -0.7
UBR4Q5T4S7 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC10.65□□□□□ -0.7
UBR4Q5T4S7 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC10.65□□□□□ -0.7
UBR4Q5T4S7 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC10.65□□□□□ -0.7
UBR4Q5T4S7 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC10.65□□□□□ -0.71
UBR4Q5T4S7 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC10.65□□□□□ -0.71
UBR4Q5T4S7 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC10.65□□□□□ -0.71
UBR4Q5T4S7 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC10.65□□□□□ -0.71
UBR4Q5T4S7 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC10.65□□□□□ -0.71
UBR4Q5T4S7 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC10.65□□□□□ -0.71
UBR4Q5T4S7 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC10.65□□□□□ -0.71
UBR4Q5T4S7 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.71
UBR4Q5T4S7 CALM3-202ENST00000391918 702 ntTSL 2 BASIC10.64□□□□□ -0.71
UBR4Q5T4S7 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC10.64□□□□□ -0.71
UBR4Q5T4S7 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC10.64□□□□□ -0.71
UBR4Q5T4S7 IGHV3-47-201ENST00000425060 335 ntBASIC10.64□□□□□ -0.71
UBR4Q5T4S7 AC018712.1-201ENST00000455767 687 ntBASIC10.64□□□□□ -0.71
UBR4Q5T4S7 HS6ST1P1-201ENST00000481504 1234 ntBASIC10.64□□□□□ -0.71
UBR4Q5T4S7 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC10.64□□□□□ -0.71
UBR4Q5T4S7 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC10.64□□□□□ -0.71
UBR4Q5T4S7 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC10.64□□□□□ -0.71
UBR4Q5T4S7 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC10.64□□□□□ -0.71
UBR4Q5T4S7 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC10.64□□□□□ -0.71
UBR4Q5T4S7 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC10.64□□□□□ -0.71
UBR4Q5T4S7 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC10.64□□□□□ -0.71
UBR4Q5T4S7 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC10.64□□□□□ -0.71
UBR4Q5T4S7 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC10.64□□□□□ -0.71
UBR4Q5T4S7 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC10.64□□□□□ -0.71
UBR4Q5T4S7 Z92544.3-201ENST00000624747 417 ntBASIC10.64□□□□□ -0.71
UBR4Q5T4S7 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC10.64□□□□□ -0.71
UBR4Q5T4S7 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC10.64□□□□□ -0.71
UBR4Q5T4S7 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC10.64□□□□□ -0.71
UBR4Q5T4S7 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
UBR4Q5T4S7 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
UBR4Q5T4S7 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
UBR4Q5T4S7 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC10.64□□□□□ -0.71
UBR4Q5T4S7 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC10.64□□□□□ -0.71
UBR4Q5T4S7 MIR662-201ENST00000384847 95 ntBASIC10.64□□□□□ -0.71
UBR4Q5T4S7 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
UBR4Q5T4S7 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC10.64□□□□□ -0.71
UBR4Q5T4S7 RPL28-205ENST00000558131 444 ntTSL 5 BASIC10.64□□□□□ -0.71
UBR4Q5T4S7 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
UBR4Q5T4S7 AC093323.1-202ENST00000635031 2045 ntBASIC10.64□□□□□ -0.71
UBR4Q5T4S7 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC10.64□□□□□ -0.71
UBR4Q5T4S7 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC10.64□□□□□ -0.71
UBR4Q5T4S7 TPT1-AS1-203ENST00000412946 744 ntTSL 3 BASIC10.64□□□□□ -0.71
UBR4Q5T4S7 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC10.64□□□□□ -0.71
Retrieved 100 of 98,524 protein–RNA pairs in 38.1 ms