Protein–RNA interactions for Protein: P51790

CLCN3, H(+)/Cl(-) exchange transporter 3, humanhuman

Predictions only

Length 818 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3P51790 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC21.33■■□□□ 1.01
CLCN3P51790 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
CLCN3P51790 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
CLCN3P51790 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
CLCN3P51790 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC21.33■■□□□ 1.01
CLCN3P51790 AL137013.1-201ENST00000432946 1228 ntBASIC21.33■■□□□ 1.01
CLCN3P51790 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC21.33■■□□□ 1.01
CLCN3P51790 AC010203.1-204ENST00000548782 407 ntBASIC21.33■■□□□ 1.01
CLCN3P51790 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
CLCN3P51790 ANKRD18DP-204ENST00000455355 1975 ntBASIC21.33■■□□□ 1.01
CLCN3P51790 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC21.33■■□□□ 1
CLCN3P51790 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC21.33■■□□□ 1
CLCN3P51790 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
CLCN3P51790 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
CLCN3P51790 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC21.33■■□□□ 1
CLCN3P51790 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC21.33■■□□□ 1
CLCN3P51790 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC21.32■■□□□ 1
CLCN3P51790 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC21.32■■□□□ 1
CLCN3P51790 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
CLCN3P51790 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC21.32■■□□□ 1
CLCN3P51790 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
CLCN3P51790 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC21.32■■□□□ 1
CLCN3P51790 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC21.32■■□□□ 1
CLCN3P51790 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC21.32■■□□□ 1
CLCN3P51790 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC21.32■■□□□ 1
CLCN3P51790 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC21.32■■□□□ 1
CLCN3P51790 MED17-221ENST00000639724 2317 ntTSL 5 BASIC21.32■■□□□ 1
CLCN3P51790 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
CLCN3P51790 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC21.32■■□□□ 1
CLCN3P51790 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC21.32■■□□□ 1
CLCN3P51790 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC21.32■■□□□ 1
CLCN3P51790 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC21.32■■□□□ 1
CLCN3P51790 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
CLCN3P51790 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC21.32■■□□□ 1
CLCN3P51790 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC21.32■■□□□ 1
CLCN3P51790 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
CLCN3P51790 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC21.32■■□□□ 1
CLCN3P51790 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC21.32■■□□□ 1
CLCN3P51790 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC21.32■■□□□ 1
CLCN3P51790 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC21.32■■□□□ 1
CLCN3P51790 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
CLCN3P51790 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC21.31■■□□□ 1
CLCN3P51790 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC21.31■■□□□ 1
CLCN3P51790 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC21.31■■□□□ 1
CLCN3P51790 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC21.31■■□□□ 1
CLCN3P51790 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC21.31■■□□□ 1
CLCN3P51790 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC21.31■■□□□ 1
CLCN3P51790 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC21.31■■□□□ 1
CLCN3P51790 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC21.31■■□□□ 1
CLCN3P51790 AC073508.3-201ENST00000619697 1419 ntBASIC21.31■■□□□ 1
CLCN3P51790 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
CLCN3P51790 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC21.31■■□□□ 1
CLCN3P51790 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
CLCN3P51790 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
CLCN3P51790 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC21.31■■□□□ 1
CLCN3P51790 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC21.31■■□□□ 1
CLCN3P51790 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC21.31■■□□□ 1
CLCN3P51790 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC21.31■■□□□ 1
CLCN3P51790 GLRB-205ENST00000512619 728 ntTSL 3 BASIC21.31■■□□□ 1
CLCN3P51790 FAM87A-204ENST00000613235 858 ntBASIC21.31■■□□□ 1
CLCN3P51790 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC21.31■■□□□ 1
CLCN3P51790 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC21.31■■□□□ 1
CLCN3P51790 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC21.31■■□□□ 1
CLCN3P51790 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
CLCN3P51790 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC21.3■■□□□ 1
CLCN3P51790 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC21.3■■□□□ 1
CLCN3P51790 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
CLCN3P51790 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
CLCN3P51790 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC21.3■■□□□ 1
CLCN3P51790 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC21.3■■□□□ 1
CLCN3P51790 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
CLCN3P51790 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC21.3■■□□□ 1
CLCN3P51790 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC21.3■■□□□ 1
CLCN3P51790 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC21.3■■□□□ 1
CLCN3P51790 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
CLCN3P51790 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC21.3■■□□□ 1
CLCN3P51790 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC21.3■■□□□ 1
CLCN3P51790 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC21.3■■□□□ 1
CLCN3P51790 CFL2-205ENST00000555765 632 ntTSL 2 BASIC21.3■■□□□ 1
CLCN3P51790 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC21.3■■□□□ 1
CLCN3P51790 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
CLCN3P51790 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
CLCN3P51790 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
CLCN3P51790 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CLCN3P51790 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC21.29■■□□□ 1
CLCN3P51790 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC21.29■■□□□ 1
CLCN3P51790 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC21.29■■□□□ 1
CLCN3P51790 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CLCN3P51790 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC21.29■■□□□ 1
CLCN3P51790 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CLCN3P51790 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC21.29■■□□□ 1
CLCN3P51790 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC21.29■■□□□ 1
CLCN3P51790 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CLCN3P51790 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC21.29■■□□□ 1
CLCN3P51790 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC21.29■■□□□ 1
CLCN3P51790 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC21.29■■□□□ 1
CLCN3P51790 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
CLCN3P51790 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC21.29■■□□□ 1
CLCN3P51790 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC21.29■■□□□ 1
CLCN3P51790 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC21.29■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 33.2 ms