Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC32.6■■■□□ 2.81
CUX1P39880 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC32.59■■■□□ 2.81
CUX1P39880 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC32.59■■■□□ 2.81
CUX1P39880 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC32.59■■■□□ 2.81
CUX1P39880 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC32.59■■■□□ 2.81
CUX1P39880 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC32.59■■■□□ 2.81
CUX1P39880 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC32.59■■■□□ 2.81
CUX1P39880 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC32.59■■■□□ 2.81
CUX1P39880 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC32.59■■■□□ 2.81
CUX1P39880 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC32.59■■■□□ 2.81
CUX1P39880 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC32.59■■■□□ 2.81
CUX1P39880 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC32.59■■■□□ 2.81
CUX1P39880 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC32.58■■■□□ 2.81
CUX1P39880 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC32.58■■■□□ 2.81
CUX1P39880 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC32.58■■■□□ 2.81
CUX1P39880 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC32.58■■■□□ 2.81
CUX1P39880 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC32.58■■■□□ 2.81
CUX1P39880 AC092119.3-201ENST00000612618 583 ntBASIC32.58■■■□□ 2.81
CUX1P39880 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC32.58■■■□□ 2.81
CUX1P39880 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC32.58■■■□□ 2.81
CUX1P39880 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC32.58■■■□□ 2.81
CUX1P39880 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC32.58■■■□□ 2.81
CUX1P39880 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC32.57■■■□□ 2.81
CUX1P39880 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC32.57■■■□□ 2.81
CUX1P39880 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC32.57■■■□□ 2.8
CUX1P39880 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC32.57■■■□□ 2.8
CUX1P39880 SKP2-204ENST00000508514 821 ntTSL 3 BASIC32.57■■■□□ 2.8
CUX1P39880 MIR3180-1-201ENST00000580374 94 ntBASIC32.57■■■□□ 2.8
CUX1P39880 MIR3180-3-201ENST00000584616 94 ntBASIC32.57■■■□□ 2.8
CUX1P39880 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC32.57■■■□□ 2.8
CUX1P39880 AL691432.3-201ENST00000621860 400 ntBASIC32.57■■■□□ 2.8
CUX1P39880 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC32.57■■■□□ 2.8
CUX1P39880 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC32.57■■■□□ 2.8
CUX1P39880 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC32.56■■■□□ 2.8
CUX1P39880 PVRIG2P-201ENST00000435460 978 ntBASIC32.56■■■□□ 2.8
CUX1P39880 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC32.56■■■□□ 2.8
CUX1P39880 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC32.56■■■□□ 2.8
CUX1P39880 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC32.56■■■□□ 2.8
CUX1P39880 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC32.56■■■□□ 2.8
CUX1P39880 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC32.56■■■□□ 2.8
CUX1P39880 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC32.56■■■□□ 2.8
CUX1P39880 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC32.56■■■□□ 2.8
CUX1P39880 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC32.56■■■□□ 2.8
CUX1P39880 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC32.56■■■□□ 2.8
CUX1P39880 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC32.56■■■□□ 2.8
CUX1P39880 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC32.56■■■□□ 2.8
CUX1P39880 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC32.56■■■□□ 2.8
CUX1P39880 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC32.56■■■□□ 2.8
CUX1P39880 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC32.56■■■□□ 2.8
CUX1P39880 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC32.56■■■□□ 2.8
CUX1P39880 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC32.56■■■□□ 2.8
CUX1P39880 WDR6-223ENST00000627177 207 ntTSL 2 BASIC32.56■■■□□ 2.8
CUX1P39880 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC32.55■■■□□ 2.8
CUX1P39880 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC32.55■■■□□ 2.8
CUX1P39880 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC32.55■■■□□ 2.8
CUX1P39880 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC32.55■■■□□ 2.8
CUX1P39880 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC32.55■■■□□ 2.8
CUX1P39880 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC32.55■■■□□ 2.8
CUX1P39880 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC32.55■■■□□ 2.8
CUX1P39880 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC32.55■■■□□ 2.8
CUX1P39880 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC32.55■■■□□ 2.8
CUX1P39880 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC32.55■■■□□ 2.8
CUX1P39880 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC32.55■■■□□ 2.8
CUX1P39880 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC32.54■■■□□ 2.8
CUX1P39880 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC32.54■■■□□ 2.8
CUX1P39880 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC32.54■■■□□ 2.8
CUX1P39880 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC32.54■■■□□ 2.8
CUX1P39880 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC32.54■■■□□ 2.8
CUX1P39880 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC32.54■■■□□ 2.8
CUX1P39880 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC32.54■■■□□ 2.8
CUX1P39880 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC32.54■■■□□ 2.8
CUX1P39880 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC32.54■■■□□ 2.8
CUX1P39880 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC32.54■■■□□ 2.8
CUX1P39880 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC32.54■■■□□ 2.8
CUX1P39880 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC32.54■■■□□ 2.8
CUX1P39880 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC32.54■■■□□ 2.8
CUX1P39880 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC32.53■■■□□ 2.8
CUX1P39880 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC32.53■■■□□ 2.8
CUX1P39880 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC32.53■■■□□ 2.8
CUX1P39880 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC32.53■■■□□ 2.8
CUX1P39880 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC32.53■■■□□ 2.8
CUX1P39880 AC092597.1-201ENST00000487352 616 ntBASIC32.53■■■□□ 2.8
CUX1P39880 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC32.53■■■□□ 2.8
CUX1P39880 GOLGA2P11-201ENST00000562660 1621 ntBASIC32.53■■■□□ 2.8
CUX1P39880 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC32.53■■■□□ 2.8
CUX1P39880 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC32.53■■■□□ 2.8
CUX1P39880 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC32.53■■■□□ 2.8
CUX1P39880 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC32.53■■■□□ 2.8
CUX1P39880 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC32.53■■■□□ 2.8
CUX1P39880 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC32.53■■■□□ 2.8
CUX1P39880 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC32.52■■■□□ 2.8
CUX1P39880 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC32.52■■■□□ 2.8
CUX1P39880 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC32.52■■■□□ 2.8
CUX1P39880 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC32.52■■■□□ 2.8
CUX1P39880 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC32.52■■■□□ 2.8
CUX1P39880 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC32.52■■■□□ 2.8
CUX1P39880 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC32.52■■■□□ 2.8
CUX1P39880 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC32.52■■■□□ 2.8
CUX1P39880 PRR29-207ENST00000580752 458 ntTSL 3 BASIC32.52■■■□□ 2.8
CUX1P39880 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC32.52■■■□□ 2.8
Retrieved 100 of 98,524 protein–RNA pairs in 37.6 ms