Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
HOXC4P09017 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
HOXC4P09017 USP48-205ENST00000421625 2818 ntTSL 2 BASIC18.95■□□□□ 0.62
HOXC4P09017 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
HOXC4P09017 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC18.95■□□□□ 0.62
HOXC4P09017 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
HOXC4P09017 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
HOXC4P09017 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
HOXC4P09017 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
HOXC4P09017 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
HOXC4P09017 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
HOXC4P09017 KRT8P11-201ENST00000409686 1436 ntBASIC18.94■□□□□ 0.62
HOXC4P09017 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC18.94■□□□□ 0.62
HOXC4P09017 AC092338.2-201ENST00000568827 1415 ntBASIC18.94■□□□□ 0.62
HOXC4P09017 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC18.94■□□□□ 0.62
HOXC4P09017 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC18.94■□□□□ 0.62
HOXC4P09017 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
HOXC4P09017 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
HOXC4P09017 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC18.94■□□□□ 0.62
HOXC4P09017 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
HOXC4P09017 TERF1P1-201ENST00000311003 1181 ntBASIC18.94■□□□□ 0.62
HOXC4P09017 TMPOP1-202ENST00000424642 1267 ntBASIC18.94■□□□□ 0.62
HOXC4P09017 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
HOXC4P09017 ECEL1P2-202ENST00000465689 757 ntBASIC18.94■□□□□ 0.62
HOXC4P09017 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC18.94■□□□□ 0.62
HOXC4P09017 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC18.94■□□□□ 0.62
HOXC4P09017 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC18.94■□□□□ 0.62
HOXC4P09017 AL353719.1-201ENST00000566847 864 ntBASIC18.94■□□□□ 0.62
HOXC4P09017 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC18.94■□□□□ 0.62
HOXC4P09017 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC18.94■□□□□ 0.62
HOXC4P09017 FAM87A-204ENST00000613235 858 ntBASIC18.94■□□□□ 0.62
HOXC4P09017 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
HOXC4P09017 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
HOXC4P09017 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
HOXC4P09017 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
HOXC4P09017 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
HOXC4P09017 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
HOXC4P09017 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
HOXC4P09017 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
HOXC4P09017 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC18.93■□□□□ 0.62
HOXC4P09017 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC18.93■□□□□ 0.62
HOXC4P09017 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
HOXC4P09017 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
HOXC4P09017 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC18.93■□□□□ 0.62
HOXC4P09017 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC18.93■□□□□ 0.62
HOXC4P09017 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC18.93■□□□□ 0.62
HOXC4P09017 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC18.93■□□□□ 0.62
HOXC4P09017 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
HOXC4P09017 HMGA1P5-201ENST00000412453 271 ntBASIC18.93■□□□□ 0.62
HOXC4P09017 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC18.93■□□□□ 0.62
HOXC4P09017 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC18.93■□□□□ 0.62
HOXC4P09017 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
HOXC4P09017 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC18.93■□□□□ 0.62
HOXC4P09017 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
HOXC4P09017 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
HOXC4P09017 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
HOXC4P09017 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC18.93■□□□□ 0.62
HOXC4P09017 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
HOXC4P09017 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
HOXC4P09017 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC18.92■□□□□ 0.62
HOXC4P09017 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
HOXC4P09017 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC18.92■□□□□ 0.62
HOXC4P09017 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
HOXC4P09017 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
HOXC4P09017 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
HOXC4P09017 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC18.92■□□□□ 0.62
HOXC4P09017 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
HOXC4P09017 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
HOXC4P09017 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC18.92■□□□□ 0.62
HOXC4P09017 TSPY21P-201ENST00000433481 731 ntBASIC18.92■□□□□ 0.62
HOXC4P09017 AC007663.1-201ENST00000438948 1240 ntBASIC18.92■□□□□ 0.62
HOXC4P09017 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC18.92■□□□□ 0.62
HOXC4P09017 RN7SL850P-201ENST00000579959 291 ntBASIC18.92■□□□□ 0.62
HOXC4P09017 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC18.92■□□□□ 0.62
HOXC4P09017 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
HOXC4P09017 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
HOXC4P09017 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC18.92■□□□□ 0.62
HOXC4P09017 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
HOXC4P09017 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC18.92■□□□□ 0.62
HOXC4P09017 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
HOXC4P09017 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC18.92■□□□□ 0.62
HOXC4P09017 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC18.92■□□□□ 0.62
HOXC4P09017 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC18.92■□□□□ 0.62
HOXC4P09017 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC18.91■□□□□ 0.62
HOXC4P09017 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC18.91■□□□□ 0.62
HOXC4P09017 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
HOXC4P09017 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
HOXC4P09017 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
HOXC4P09017 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
HOXC4P09017 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC18.91■□□□□ 0.62
HOXC4P09017 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC18.91■□□□□ 0.62
HOXC4P09017 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC18.91■□□□□ 0.62
HOXC4P09017 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
HOXC4P09017 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
HOXC4P09017 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
HOXC4P09017 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
HOXC4P09017 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
HOXC4P09017 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
HOXC4P09017 INGX-201ENST00000359239 846 ntBASIC18.91■□□□□ 0.62
HOXC4P09017 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms