Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
SIX3O95343 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC18.94■□□□□ 0.62
SIX3O95343 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
SIX3O95343 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
SIX3O95343 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
SIX3O95343 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC18.93■□□□□ 0.62
SIX3O95343 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC18.93■□□□□ 0.62
SIX3O95343 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SIX3O95343 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SIX3O95343 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SIX3O95343 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SIX3O95343 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC18.93■□□□□ 0.62
SIX3O95343 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SIX3O95343 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
SIX3O95343 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SIX3O95343 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SIX3O95343 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC18.93■□□□□ 0.62
SIX3O95343 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
SIX3O95343 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
SIX3O95343 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
SIX3O95343 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC18.93■□□□□ 0.62
SIX3O95343 OR2A1-AS1-207ENST00000486094 819 ntBASIC18.93■□□□□ 0.62
SIX3O95343 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SIX3O95343 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
SIX3O95343 SOX15-203ENST00000570788 1093 ntBASIC18.93■□□□□ 0.62
SIX3O95343 KLF2-202ENST00000592003 564 ntTSL 3 BASIC18.93■□□□□ 0.62
SIX3O95343 AC120498.8-201ENST00000614275 531 ntBASIC18.93■□□□□ 0.62
SIX3O95343 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC18.93■□□□□ 0.62
SIX3O95343 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
SIX3O95343 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
SIX3O95343 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
SIX3O95343 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
SIX3O95343 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SIX3O95343 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SIX3O95343 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
SIX3O95343 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC18.93■□□□□ 0.62
SIX3O95343 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
SIX3O95343 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
SIX3O95343 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
SIX3O95343 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SIX3O95343 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
SIX3O95343 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SIX3O95343 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
SIX3O95343 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
SIX3O95343 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC18.92■□□□□ 0.62
SIX3O95343 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SIX3O95343 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC18.92■□□□□ 0.62
SIX3O95343 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC18.92■□□□□ 0.62
SIX3O95343 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SIX3O95343 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
SIX3O95343 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
SIX3O95343 AC104417.2-201ENST00000562989 1793 ntBASIC18.92■□□□□ 0.62
SIX3O95343 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
SIX3O95343 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SIX3O95343 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SIX3O95343 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC18.92■□□□□ 0.62
SIX3O95343 ABHD17AP6-201ENST00000458502 1044 ntBASIC18.92■□□□□ 0.62
SIX3O95343 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC18.92■□□□□ 0.62
SIX3O95343 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
SIX3O95343 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC18.92■□□□□ 0.62
SIX3O95343 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC18.92■□□□□ 0.62
SIX3O95343 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SIX3O95343 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SIX3O95343 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
SIX3O95343 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
SIX3O95343 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC18.92■□□□□ 0.62
SIX3O95343 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SIX3O95343 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SIX3O95343 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
SIX3O95343 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
SIX3O95343 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
SIX3O95343 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC18.91■□□□□ 0.62
SIX3O95343 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
SIX3O95343 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SIX3O95343 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
SIX3O95343 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SIX3O95343 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC18.91■□□□□ 0.62
SIX3O95343 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
SIX3O95343 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC18.91■□□□□ 0.62
SIX3O95343 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SIX3O95343 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SIX3O95343 AC069152.1-201ENST00000438030 544 ntBASIC18.91■□□□□ 0.62
SIX3O95343 YBX1P10-201ENST00000444752 975 ntBASIC18.91■□□□□ 0.62
SIX3O95343 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC18.91■□□□□ 0.62
SIX3O95343 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
SIX3O95343 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC18.91■□□□□ 0.62
SIX3O95343 AC104771.1-201ENST00000603335 964 ntBASIC18.91■□□□□ 0.62
SIX3O95343 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC18.91■□□□□ 0.62
SIX3O95343 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
SIX3O95343 AIRN-201ENST00000601203 4374 ntBASIC18.91■□□□□ 0.62
SIX3O95343 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
SIX3O95343 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
SIX3O95343 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC18.91■□□□□ 0.62
SIX3O95343 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
SIX3O95343 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SIX3O95343 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SIX3O95343 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC18.91■□□□□ 0.62
SIX3O95343 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC18.91■□□□□ 0.62
SIX3O95343 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SIX3O95343 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC18.9■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 37.5 ms