Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SEMA3DO95025 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SEMA3DO95025 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
SEMA3DO95025 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SEMA3DO95025 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SEMA3DO95025 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
SEMA3DO95025 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SEMA3DO95025 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
SEMA3DO95025 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC18.55■□□□□ 0.56
SEMA3DO95025 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
SEMA3DO95025 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC18.55■□□□□ 0.56
SEMA3DO95025 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
SEMA3DO95025 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC18.55■□□□□ 0.56
SEMA3DO95025 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC18.55■□□□□ 0.56
SEMA3DO95025 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SEMA3DO95025 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
SEMA3DO95025 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
SEMA3DO95025 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
SEMA3DO95025 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC18.55■□□□□ 0.56
SEMA3DO95025 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC18.55■□□□□ 0.56
SEMA3DO95025 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
SEMA3DO95025 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC18.55■□□□□ 0.56
SEMA3DO95025 MMAB-206ENST00000540016 945 ntTSL 3 BASIC18.55■□□□□ 0.56
SEMA3DO95025 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
SEMA3DO95025 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC18.55■□□□□ 0.56
SEMA3DO95025 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
SEMA3DO95025 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
SEMA3DO95025 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
SEMA3DO95025 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
SEMA3DO95025 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC18.55■□□□□ 0.56
SEMA3DO95025 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SEMA3DO95025 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC18.54■□□□□ 0.56
SEMA3DO95025 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC18.54■□□□□ 0.56
SEMA3DO95025 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
SEMA3DO95025 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SEMA3DO95025 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SEMA3DO95025 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
SEMA3DO95025 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SEMA3DO95025 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SEMA3DO95025 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC18.54■□□□□ 0.56
SEMA3DO95025 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC18.54■□□□□ 0.56
SEMA3DO95025 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC18.54■□□□□ 0.56
SEMA3DO95025 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC18.54■□□□□ 0.56
SEMA3DO95025 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SEMA3DO95025 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
SEMA3DO95025 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC18.54■□□□□ 0.56
SEMA3DO95025 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
SEMA3DO95025 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC18.54■□□□□ 0.56
SEMA3DO95025 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
SEMA3DO95025 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
SEMA3DO95025 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC18.54■□□□□ 0.56
SEMA3DO95025 MTDHP1-201ENST00000605323 784 ntBASIC18.54■□□□□ 0.56
SEMA3DO95025 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SEMA3DO95025 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC18.54■□□□□ 0.56
SEMA3DO95025 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC18.54■□□□□ 0.56
SEMA3DO95025 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SEMA3DO95025 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
SEMA3DO95025 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SEMA3DO95025 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC18.54■□□□□ 0.56
SEMA3DO95025 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC18.54■□□□□ 0.56
SEMA3DO95025 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
SEMA3DO95025 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
SEMA3DO95025 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SEMA3DO95025 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SEMA3DO95025 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC18.53■□□□□ 0.56
SEMA3DO95025 ANKRD18DP-204ENST00000455355 1975 ntBASIC18.53■□□□□ 0.56
SEMA3DO95025 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC18.53■□□□□ 0.56
SEMA3DO95025 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC18.53■□□□□ 0.56
SEMA3DO95025 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
SEMA3DO95025 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
SEMA3DO95025 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
SEMA3DO95025 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
SEMA3DO95025 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC18.53■□□□□ 0.56
SEMA3DO95025 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
SEMA3DO95025 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
SEMA3DO95025 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
SEMA3DO95025 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SEMA3DO95025 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SEMA3DO95025 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
SEMA3DO95025 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SEMA3DO95025 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC18.53■□□□□ 0.56
SEMA3DO95025 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
SEMA3DO95025 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC18.53■□□□□ 0.56
SEMA3DO95025 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC18.53■□□□□ 0.56
SEMA3DO95025 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC18.53■□□□□ 0.56
SEMA3DO95025 Six3os1_6.1-201ENST00000620790 196 ntBASIC18.53■□□□□ 0.56
SEMA3DO95025 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC18.53■□□□□ 0.56
SEMA3DO95025 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
SEMA3DO95025 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
SEMA3DO95025 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
SEMA3DO95025 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
SEMA3DO95025 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
SEMA3DO95025 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
SEMA3DO95025 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC18.53■□□□□ 0.56
SEMA3DO95025 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
SEMA3DO95025 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC18.53■□□□□ 0.56
SEMA3DO95025 NBPF21P-201ENST00000425093 1451 ntBASIC18.52■□□□□ 0.56
SEMA3DO95025 AL032819.2-201ENST00000624543 2162 ntBASIC18.52■□□□□ 0.56
SEMA3DO95025 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC18.52■□□□□ 0.56
SEMA3DO95025 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 19.2 ms