Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC21.82■■□□□ 1.08
MSH4O15457 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC21.82■■□□□ 1.08
MSH4O15457 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC21.82■■□□□ 1.08
MSH4O15457 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC21.82■■□□□ 1.08
MSH4O15457 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC21.82■■□□□ 1.08
MSH4O15457 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC21.82■■□□□ 1.08
MSH4O15457 AC130371.2-201ENST00000619443 611 ntBASIC21.82■■□□□ 1.08
MSH4O15457 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
MSH4O15457 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
MSH4O15457 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC21.82■■□□□ 1.08
MSH4O15457 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC21.82■■□□□ 1.08
MSH4O15457 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
MSH4O15457 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
MSH4O15457 AC079598.2-202ENST00000546624 1451 ntBASIC21.82■■□□□ 1.08
MSH4O15457 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
MSH4O15457 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC21.82■■□□□ 1.08
MSH4O15457 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
MSH4O15457 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC21.81■■□□□ 1.08
MSH4O15457 KRT8P41-201ENST00000533985 1514 ntBASIC21.81■■□□□ 1.08
MSH4O15457 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC21.81■■□□□ 1.08
MSH4O15457 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
MSH4O15457 POLI-202ENST00000406285 2030 ntTSL 2 BASIC21.81■■□□□ 1.08
MSH4O15457 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC21.81■■□□□ 1.08
MSH4O15457 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
MSH4O15457 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC21.81■■□□□ 1.08
MSH4O15457 BX088651.1-201ENST00000540551 451 ntBASIC21.81■■□□□ 1.08
MSH4O15457 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC21.81■■□□□ 1.08
MSH4O15457 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC21.81■■□□□ 1.08
MSH4O15457 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
MSH4O15457 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
MSH4O15457 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC21.81■■□□□ 1.08
MSH4O15457 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
MSH4O15457 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC21.8■■□□□ 1.08
MSH4O15457 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
MSH4O15457 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
MSH4O15457 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC21.8■■□□□ 1.08
MSH4O15457 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC21.8■■□□□ 1.08
MSH4O15457 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
MSH4O15457 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC21.8■■□□□ 1.08
MSH4O15457 AC004951.3-201ENST00000418645 1148 ntBASIC21.8■■□□□ 1.08
MSH4O15457 AC091390.4-202ENST00000476426 537 ntBASIC21.8■■□□□ 1.08
MSH4O15457 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
MSH4O15457 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
MSH4O15457 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC21.8■■□□□ 1.08
MSH4O15457 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC21.8■■□□□ 1.08
MSH4O15457 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC21.8■■□□□ 1.08
MSH4O15457 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
MSH4O15457 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC21.8■■□□□ 1.08
MSH4O15457 SDHAP1-207ENST00000440850 2000 ntBASIC21.8■■□□□ 1.08
MSH4O15457 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC21.79■■□□□ 1.08
MSH4O15457 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC21.79■■□□□ 1.08
MSH4O15457 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
MSH4O15457 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC21.79■■□□□ 1.08
MSH4O15457 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
MSH4O15457 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC21.79■■□□□ 1.08
MSH4O15457 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
MSH4O15457 GXYLT1P3-201ENST00000453058 1193 ntBASIC21.79■■□□□ 1.08
MSH4O15457 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC21.79■■□□□ 1.08
MSH4O15457 AC011298.2-201ENST00000617989 482 ntBASIC21.79■■□□□ 1.08
MSH4O15457 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC21.79■■□□□ 1.08
MSH4O15457 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC21.79■■□□□ 1.08
MSH4O15457 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC21.79■■□□□ 1.08
MSH4O15457 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC21.79■■□□□ 1.08
MSH4O15457 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC21.79■■□□□ 1.08
MSH4O15457 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC21.79■■□□□ 1.08
MSH4O15457 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC21.79■■□□□ 1.08
MSH4O15457 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
MSH4O15457 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC21.79■■□□□ 1.08
MSH4O15457 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC21.78■■□□□ 1.08
MSH4O15457 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
MSH4O15457 Z82202.1-201ENST00000623446 1880 ntBASIC21.78■■□□□ 1.08
MSH4O15457 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
MSH4O15457 TP73-202ENST00000354437 2140 ntTSL 5 BASIC21.78■■□□□ 1.08
MSH4O15457 GLRB-205ENST00000512619 728 ntTSL 3 BASIC21.78■■□□□ 1.08
MSH4O15457 AP000525.1-201ENST00000608286 694 ntBASIC21.78■■□□□ 1.08
MSH4O15457 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
MSH4O15457 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
MSH4O15457 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
MSH4O15457 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
MSH4O15457 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
MSH4O15457 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
MSH4O15457 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC21.78■■□□□ 1.08
MSH4O15457 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
MSH4O15457 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
MSH4O15457 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC21.77■■□□□ 1.08
MSH4O15457 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC21.77■■□□□ 1.08
MSH4O15457 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
MSH4O15457 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
MSH4O15457 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC21.77■■□□□ 1.08
MSH4O15457 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
MSH4O15457 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
MSH4O15457 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC21.77■■□□□ 1.08
MSH4O15457 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
MSH4O15457 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC21.77■■□□□ 1.08
MSH4O15457 UNC93B2-201ENST00000285383 730 ntBASIC21.77■■□□□ 1.08
MSH4O15457 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
MSH4O15457 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC21.77■■□□□ 1.08
MSH4O15457 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC21.77■■□□□ 1.08
MSH4O15457 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
MSH4O15457 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 37.2 ms