Protein–RNA interactions for Protein: O14646

CHD1, Chromodomain-helicase-DNA-binding protein 1, humanhuman

Predictions only

Length 1,710 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD1O14646 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC31.53■■■□□ 2.64
CHD1O14646 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC31.53■■■□□ 2.64
CHD1O14646 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC31.53■■■□□ 2.64
CHD1O14646 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC31.53■■■□□ 2.64
CHD1O14646 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC31.52■■■□□ 2.64
CHD1O14646 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC31.52■■■□□ 2.64
CHD1O14646 PPIE-208ENST00000470213 927 ntTSL 3 BASIC31.52■■■□□ 2.64
CHD1O14646 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC31.52■■■□□ 2.64
CHD1O14646 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC31.52■■■□□ 2.64
CHD1O14646 AL353801.3-201ENST00000609898 542 ntBASIC31.52■■■□□ 2.64
CHD1O14646 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC31.52■■■□□ 2.64
CHD1O14646 AC022898.2-201ENST00000616822 1312 ntBASIC31.52■■■□□ 2.64
CHD1O14646 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC31.52■■■□□ 2.64
CHD1O14646 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC31.52■■■□□ 2.64
CHD1O14646 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC31.52■■■□□ 2.64
CHD1O14646 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC31.52■■■□□ 2.64
CHD1O14646 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC31.52■■■□□ 2.64
CHD1O14646 MIR7706-201ENST00000613747 67 ntBASIC31.52■■■□□ 2.64
CHD1O14646 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC31.52■■■□□ 2.64
CHD1O14646 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC31.52■■■□□ 2.64
CHD1O14646 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC31.51■■■□□ 2.63
CHD1O14646 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC31.51■■■□□ 2.63
CHD1O14646 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC31.51■■■□□ 2.63
CHD1O14646 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC31.51■■■□□ 2.63
CHD1O14646 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC31.51■■■□□ 2.63
CHD1O14646 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC31.51■■■□□ 2.63
CHD1O14646 AL773604.1-201ENST00000617417 272 ntBASIC31.51■■■□□ 2.63
CHD1O14646 AC121338.2-201ENST00000622535 1744 ntBASIC31.51■■■□□ 2.63
CHD1O14646 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC31.51■■■□□ 2.63
CHD1O14646 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC31.5■■■□□ 2.63
CHD1O14646 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC31.5■■■□□ 2.63
CHD1O14646 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC31.5■■■□□ 2.63
CHD1O14646 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC31.5■■■□□ 2.63
CHD1O14646 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC31.5■■■□□ 2.63
CHD1O14646 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC31.5■■■□□ 2.63
CHD1O14646 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC31.5■■■□□ 2.63
CHD1O14646 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC31.5■■■□□ 2.63
CHD1O14646 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC31.5■■■□□ 2.63
CHD1O14646 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC31.5■■■□□ 2.63
CHD1O14646 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC31.5■■■□□ 2.63
CHD1O14646 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC31.5■■■□□ 2.63
CHD1O14646 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC31.5■■■□□ 2.63
CHD1O14646 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC31.5■■■□□ 2.63
CHD1O14646 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC31.49■■■□□ 2.63
CHD1O14646 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC31.49■■■□□ 2.63
CHD1O14646 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC31.49■■■□□ 2.63
CHD1O14646 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC31.49■■■□□ 2.63
CHD1O14646 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC31.49■■■□□ 2.63
CHD1O14646 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC31.49■■■□□ 2.63
CHD1O14646 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC31.49■■■□□ 2.63
CHD1O14646 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC31.49■■■□□ 2.63
CHD1O14646 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC31.49■■■□□ 2.63
CHD1O14646 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC31.49■■■□□ 2.63
CHD1O14646 POLD2P1-201ENST00000511220 997 ntBASIC31.49■■■□□ 2.63
CHD1O14646 REXO1L6P-202ENST00000619970 1078 ntBASIC31.49■■■□□ 2.63
CHD1O14646 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC31.49■■■□□ 2.63
CHD1O14646 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC31.48■■■□□ 2.63
CHD1O14646 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC31.48■■■□□ 2.63
CHD1O14646 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC31.48■■■□□ 2.63
CHD1O14646 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC31.48■■■□□ 2.63
CHD1O14646 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC31.48■■■□□ 2.63
CHD1O14646 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC31.48■■■□□ 2.63
CHD1O14646 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC31.48■■■□□ 2.63
CHD1O14646 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC31.48■■■□□ 2.63
CHD1O14646 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC31.48■■■□□ 2.63
CHD1O14646 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC31.48■■■□□ 2.63
CHD1O14646 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC31.48■■■□□ 2.63
CHD1O14646 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC31.47■■■□□ 2.63
CHD1O14646 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC31.47■■■□□ 2.63
CHD1O14646 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC31.47■■■□□ 2.63
CHD1O14646 BUB3-202ENST00000368859 667 ntTSL 3 BASIC31.47■■■□□ 2.63
CHD1O14646 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC31.47■■■□□ 2.63
CHD1O14646 SEC1P-202ENST00000473944 940 ntBASIC31.47■■■□□ 2.63
CHD1O14646 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC31.47■■■□□ 2.63
CHD1O14646 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC31.47■■■□□ 2.63
CHD1O14646 C9orf163-202ENST00000624034 2573 ntBASIC31.47■■■□□ 2.63
CHD1O14646 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC31.47■■■□□ 2.63
CHD1O14646 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC31.47■■■□□ 2.63
CHD1O14646 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC31.47■■■□□ 2.63
CHD1O14646 BX842568.4-201ENST00000421222 227 ntBASIC31.46■■■□□ 2.63
CHD1O14646 NME1-207ENST00000480143 964 ntTSL 2 BASIC31.46■■■□□ 2.63
CHD1O14646 ABBA01031661.1-201ENST00000634362 1253 ntBASIC31.46■■■□□ 2.63
CHD1O14646 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC31.46■■■□□ 2.63
CHD1O14646 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC31.46■■■□□ 2.63
CHD1O14646 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC31.46■■■□□ 2.63
CHD1O14646 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC31.46■■■□□ 2.63
CHD1O14646 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC31.46■■■□□ 2.63
CHD1O14646 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC31.46■■■□□ 2.63
CHD1O14646 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC31.46■■■□□ 2.63
CHD1O14646 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC31.46■■■□□ 2.63
CHD1O14646 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC31.46■■■□□ 2.63
CHD1O14646 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC31.46■■■□□ 2.63
CHD1O14646 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC31.46■■■□□ 2.63
CHD1O14646 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC31.45■■■□□ 2.63
CHD1O14646 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC31.45■■■□□ 2.63
CHD1O14646 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC31.45■■■□□ 2.63
CHD1O14646 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC31.45■■■□□ 2.63
CHD1O14646 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC31.45■■■□□ 2.63
CHD1O14646 UBC-206ENST00000538617 1303 ntTSL 5 BASIC31.45■■■□□ 2.63
CHD1O14646 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC31.45■■■□□ 2.63
Retrieved 100 of 98,524 protein–RNA pairs in 41.4 ms