Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 AC068490.1-202ENST00000637384 3185 ntTSL 5 BASIC7.33□□□□□ -1.24
VPS9D1Q9Y2B5 AL049697.1-201ENST00000507897 2301 ntAPPRIS P1 TSL 2 BASIC7.33□□□□□ -1.24
VPS9D1Q9Y2B5 LRIG3-202ENST00000379141 3667 ntTSL 1 (best) BASIC7.33□□□□□ -1.24
VPS9D1Q9Y2B5 CDY11P-201ENST00000447168 1651 ntBASIC7.33□□□□□ -1.24
VPS9D1Q9Y2B5 Y_RNA.526-201ENST00000384572 110 ntBASIC7.33□□□□□ -1.24
VPS9D1Q9Y2B5 DEFB116-201ENST00000400549 309 ntAPPRIS P1 TSL 1 (best) BASIC7.33□□□□□ -1.24
VPS9D1Q9Y2B5 MIR1298-201ENST00000408783 112 ntBASIC7.33□□□□□ -1.24
VPS9D1Q9Y2B5 AC096664.2-201ENST00000411843 406 ntBASIC7.33□□□□□ -1.24
VPS9D1Q9Y2B5 IFNA12P-201ENST00000413147 571 ntBASIC7.33□□□□□ -1.24
VPS9D1Q9Y2B5 LINC01507-201ENST00000417801 446 ntTSL 5 BASIC7.33□□□□□ -1.24
VPS9D1Q9Y2B5 AL139095.3-201ENST00000419672 1203 ntBASIC7.33□□□□□ -1.24
VPS9D1Q9Y2B5 AL357632.1-201ENST00000426688 643 ntBASIC7.33□□□□□ -1.24
VPS9D1Q9Y2B5 FGF12-202ENST00000430714 603 ntTSL 2 BASIC7.33□□□□□ -1.24
VPS9D1Q9Y2B5 USP9YP30-201ENST00000430729 455 ntBASIC7.33□□□□□ -1.24
VPS9D1Q9Y2B5 AC108039.2-201ENST00000440214 359 ntBASIC7.33□□□□□ -1.24
VPS9D1Q9Y2B5 AL139135.2-201ENST00000445040 433 ntBASIC7.33□□□□□ -1.24
VPS9D1Q9Y2B5 LINC01809-201ENST00000448431 303 ntTSL 1 (best) BASIC7.33□□□□□ -1.24
VPS9D1Q9Y2B5 OR7E116P-201ENST00000448529 957 ntBASIC7.33□□□□□ -1.24
VPS9D1Q9Y2B5 AC245028.2-201ENST00000458673 253 ntBASIC7.33□□□□□ -1.24
VPS9D1Q9Y2B5 RPL9P32-201ENST00000464118 620 ntBASIC7.33□□□□□ -1.24
VPS9D1Q9Y2B5 RPL21P71-201ENST00000465598 459 ntBASIC7.33□□□□□ -1.24
VPS9D1Q9Y2B5 AC026336.1-201ENST00000466577 351 ntBASIC7.33□□□□□ -1.24
VPS9D1Q9Y2B5 RPL21P93-201ENST00000480465 489 ntBASIC7.33□□□□□ -1.24
VPS9D1Q9Y2B5 AC055855.1-201ENST00000489563 579 ntBASIC7.33□□□□□ -1.24
VPS9D1Q9Y2B5 AC107393.1-201ENST00000512403 346 ntBASIC7.33□□□□□ -1.24
VPS9D1Q9Y2B5 AC027801.3-201ENST00000515049 698 ntBASIC7.33□□□□□ -1.24
VPS9D1Q9Y2B5 RNU6-897P-201ENST00000517135 105 ntBASIC7.33□□□□□ -1.24
VPS9D1Q9Y2B5 SAA3P-201ENST00000533267 365 ntBASIC7.33□□□□□ -1.24
VPS9D1Q9Y2B5 AP002392.1-201ENST00000537692 208 ntBASIC7.33□□□□□ -1.24
VPS9D1Q9Y2B5 CBX3P4-201ENST00000538909 354 ntBASIC7.33□□□□□ -1.24
VPS9D1Q9Y2B5 SETP2-201ENST00000553886 926 ntBASIC7.33□□□□□ -1.24
VPS9D1Q9Y2B5 PSMA6-214ENST00000556506 763 ntTSL 5 BASIC7.33□□□□□ -1.24
VPS9D1Q9Y2B5 AC026471.4-201ENST00000569291 449 ntTSL 5 BASIC7.33□□□□□ -1.24
VPS9D1Q9Y2B5 AC090517.1-201ENST00000569307 266 ntBASIC7.33□□□□□ -1.24
VPS9D1Q9Y2B5 AC064805.1-203ENST00000577560 526 ntTSL 3 BASIC7.33□□□□□ -1.24
VPS9D1Q9Y2B5 MIR663AHG-213ENST00000596767 837 ntTSL 5 BASIC7.33□□□□□ -1.24
VPS9D1Q9Y2B5 AC097467.3-205ENST00000597955 594 ntTSL 5 BASIC7.33□□□□□ -1.24
VPS9D1Q9Y2B5 AL022097.1-201ENST00000602500 806 ntTSL 1 (best) BASIC7.33□□□□□ -1.24
VPS9D1Q9Y2B5 AC243571.1-201ENST00000615743 478 ntTSL 3 BASIC7.33□□□□□ -1.24
VPS9D1Q9Y2B5 AC211486.5-201ENST00000616609 775 ntTSL 3 BASIC7.33□□□□□ -1.24
VPS9D1Q9Y2B5 AL445363.3-201ENST00000623080 671 ntBASIC7.33□□□□□ -1.24
VPS9D1Q9Y2B5 AC011155.2-201ENST00000623202 216 ntBASIC7.33□□□□□ -1.24
VPS9D1Q9Y2B5 ABL2-201ENST00000344730 6910 ntAPPRIS ALT2 TSL 1 (best) BASIC7.33□□□□□ -1.24
VPS9D1Q9Y2B5 DDX50P1-201ENST00000438163 2400 ntBASIC7.33□□□□□ -1.24
VPS9D1Q9Y2B5 KIAA1549L-201ENST00000265654 4492 ntAPPRIS ALT2 TSL 2 BASIC7.33□□□□□ -1.24
VPS9D1Q9Y2B5 PIK3R3-202ENST00000372006 5019 ntAPPRIS P1 TSL 1 (best) BASIC7.33□□□□□ -1.24
VPS9D1Q9Y2B5 THSD7B-202ENST00000409968 6111 ntAPPRIS P2 TSL 5 BASIC7.33□□□□□ -1.24
VPS9D1Q9Y2B5 CTNND1-236ENST00000533667 4990 ntTSL 1 (best) BASIC7.33□□□□□ -1.24
VPS9D1Q9Y2B5 RAI14-208ENST00000506376 3091 ntTSL 1 (best) BASIC7.33□□□□□ -1.24
VPS9D1Q9Y2B5 KIAA1549L-202ENST00000321505 11678 ntAPPRIS P2 TSL 1 (best) BASIC7.33□□□□□ -1.24
VPS9D1Q9Y2B5 NDRG3-203ENST00000373773 2098 ntTSL 1 (best) BASIC7.32□□□□□ -1.24
VPS9D1Q9Y2B5 RND3-202ENST00000375734 2777 ntAPPRIS P1 TSL 1 (best) BASIC7.32□□□□□ -1.24
VPS9D1Q9Y2B5 ZNF566-201ENST00000392170 2755 ntAPPRIS ALT2 TSL 5 BASIC7.32□□□□□ -1.24
VPS9D1Q9Y2B5 STAMBPL1-201ENST00000371922 1899 ntTSL 2 BASIC7.32□□□□□ -1.24
VPS9D1Q9Y2B5 ARID5B-201ENST00000279873 7891 ntAPPRIS P1 TSL 1 (best) BASIC7.32□□□□□ -1.24
VPS9D1Q9Y2B5 AGO1-202ENST00000373206 3996 ntTSL 2 BASIC7.32□□□□□ -1.24
VPS9D1Q9Y2B5 AMD1-203ENST00000368882 3059 ntTSL 2 BASIC7.32□□□□□ -1.24
VPS9D1Q9Y2B5 PEX13-201ENST00000295030 4470 ntAPPRIS P1 TSL 1 (best) BASIC7.32□□□□□ -1.24
VPS9D1Q9Y2B5 AGO1-201ENST00000373204 13708 ntAPPRIS P1 TSL 1 (best) BASIC7.32□□□□□ -1.24
VPS9D1Q9Y2B5 SENP8-201ENST00000340912 4281 ntAPPRIS P1 TSL 1 (best) BASIC7.32□□□□□ -1.24
VPS9D1Q9Y2B5 BRS3-201ENST00000370648 2833 ntAPPRIS P1 TSL 1 (best) BASIC7.32□□□□□ -1.24
VPS9D1Q9Y2B5 IGKV7-3-201ENST00000357453 298 ntBASIC7.32□□□□□ -1.24
VPS9D1Q9Y2B5 RN7SKP36-201ENST00000363997 312 ntBASIC7.32□□□□□ -1.24
VPS9D1Q9Y2B5 RNU5A-8P-201ENST00000364102 114 ntBASIC7.32□□□□□ -1.24
VPS9D1Q9Y2B5 RNA5SP238-201ENST00000365464 120 ntBASIC7.32□□□□□ -1.24
VPS9D1Q9Y2B5 RNY3P13-201ENST00000365542 102 ntBASIC7.32□□□□□ -1.24
VPS9D1Q9Y2B5 Y_RNA.577-201ENST00000384794 101 ntBASIC7.32□□□□□ -1.24
VPS9D1Q9Y2B5 PTMAP8-201ENST00000397729 342 ntBASIC7.32□□□□□ -1.24
VPS9D1Q9Y2B5 AC113608.1-201ENST00000398740 305 ntBASIC7.32□□□□□ -1.24
VPS9D1Q9Y2B5 MRPL35P1-201ENST00000404272 572 ntBASIC7.32□□□□□ -1.24
VPS9D1Q9Y2B5 AC010132.1-201ENST00000433315 561 ntTSL 4 BASIC7.32□□□□□ -1.24
VPS9D1Q9Y2B5 GAPDHP33-201ENST00000443168 1013 ntBASIC7.32□□□□□ -1.24
VPS9D1Q9Y2B5 CHEK2P4-201ENST00000450340 246 ntBASIC7.32□□□□□ -1.24
VPS9D1Q9Y2B5 AC005297.2-201ENST00000450430 606 ntBASIC7.32□□□□□ -1.24
VPS9D1Q9Y2B5 ATP5G1P6-201ENST00000451206 412 ntBASIC7.32□□□□□ -1.24
VPS9D1Q9Y2B5 AC022080.2-201ENST00000452932 533 ntBASIC7.32□□□□□ -1.24
VPS9D1Q9Y2B5 AC034195.1-203ENST00000455703 728 ntTSL 2 BASIC7.32□□□□□ -1.24
VPS9D1Q9Y2B5 RN7SL251P-201ENST00000464175 297 ntBASIC7.32□□□□□ -1.24
VPS9D1Q9Y2B5 AC066616.1-201ENST00000486795 413 ntBASIC7.32□□□□□ -1.24
VPS9D1Q9Y2B5 AC105758.1-201ENST00000506038 399 ntBASIC7.32□□□□□ -1.24
VPS9D1Q9Y2B5 OR51A1P-201ENST00000511110 946 ntBASIC7.32□□□□□ -1.24
VPS9D1Q9Y2B5 RNU6-397P-201ENST00000516226 104 ntBASIC7.32□□□□□ -1.24
VPS9D1Q9Y2B5 RNU6-479P-201ENST00000516348 105 ntBASIC7.32□□□□□ -1.24
VPS9D1Q9Y2B5 LINC00967-204ENST00000518412 271 ntTSL 5 BASIC7.32□□□□□ -1.24
VPS9D1Q9Y2B5 PKIA-203ENST00000518467 588 ntAPPRIS P1 TSL 1 (best) BASIC7.32□□□□□ -1.24
VPS9D1Q9Y2B5 VPS37A-208ENST00000521005 479 ntTSL 3 BASIC7.32□□□□□ -1.24
VPS9D1Q9Y2B5 KCTD21-AS1-203ENST00000527321 586 ntTSL 3 BASIC7.32□□□□□ -1.24
VPS9D1Q9Y2B5 AC127381.1-201ENST00000555979 939 ntBASIC7.32□□□□□ -1.24
VPS9D1Q9Y2B5 AC090409.2-202ENST00000585706 604 ntTSL 5 BASIC7.32□□□□□ -1.24
VPS9D1Q9Y2B5 AL353997.4-201ENST00000586196 166 ntBASIC7.32□□□□□ -1.24
VPS9D1Q9Y2B5 AL512782.1-201ENST00000603093 364 ntBASIC7.32□□□□□ -1.24
VPS9D1Q9Y2B5 RPS28P1-201ENST00000604589 187 ntBASIC7.32□□□□□ -1.24
VPS9D1Q9Y2B5 FAM27E4-201ENST00000605259 342 ntBASIC7.32□□□□□ -1.24
VPS9D1Q9Y2B5 AL031666.3-201ENST00000609320 1006 ntBASIC7.32□□□□□ -1.24
VPS9D1Q9Y2B5 FAM27E3-202ENST00000614611 340 ntBASIC7.32□□□□□ -1.24
VPS9D1Q9Y2B5 MIR6736-201ENST00000616799 59 ntBASIC7.32□□□□□ -1.24
VPS9D1Q9Y2B5 AL121985.2-201ENST00000621192 555 ntBASIC7.32□□□□□ -1.24
VPS9D1Q9Y2B5 AC073869.10-201ENST00000642016 354 ntBASIC7.32□□□□□ -1.24
VPS9D1Q9Y2B5 LINC00862-201ENST00000367355 1417 ntTSL 1 (best) BASIC7.32□□□□□ -1.24
VPS9D1Q9Y2B5 PWRN1-211ENST00000568609 1443 ntTSL 1 (best) BASIC7.32□□□□□ -1.24
Retrieved 100 of 98,524 protein–RNA pairs in 87.7 ms