Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 STXBP4-201ENST00000376352 15590 ntAPPRIS P1 TSL 2 BASIC3.78□□□□□ -1.8
FOXA1P55317 AC006504.1-201ENST00000562493 3666 ntBASIC3.78□□□□□ -1.8
FOXA1P55317 AC027287.1-201ENST00000553115 1453 ntBASIC3.78□□□□□ -1.8
FOXA1P55317 NEDD4-201ENST00000338963 7019 ntTSL 1 (best) BASIC3.78□□□□□ -1.81
FOXA1P55317 EPC1-203ENST00000375110 3909 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
FOXA1P55317 SCAI-201ENST00000336505 12079 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
FOXA1P55317 PUS7L-207ENST00000551923 3313 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
FOXA1P55317 LRRC3B-205ENST00000456208 1551 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
FOXA1P55317 NCOA1-203ENST00000395856 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC3.77□□□□□ -1.81
FOXA1P55317 OR5B17-201ENST00000357377 946 ntAPPRIS P1 BASIC3.77□□□□□ -1.81
FOXA1P55317 RNU1-18P-201ENST00000363062 164 ntBASIC3.77□□□□□ -1.81
FOXA1P55317 ENSAP1-201ENST00000392855 326 ntBASIC3.77□□□□□ -1.81
FOXA1P55317 C8orf22-202ENST00000399653 1272 ntAPPRIS P3 TSL 1 (best) BASIC3.77□□□□□ -1.81
FOXA1P55317 ST13P16-201ENST00000401760 781 ntBASIC3.77□□□□□ -1.81
FOXA1P55317 RN7SKP56-201ENST00000410513 331 ntBASIC3.77□□□□□ -1.81
FOXA1P55317 RNU4-6P-201ENST00000410804 122 ntBASIC3.77□□□□□ -1.81
FOXA1P55317 RAB28P1-201ENST00000411517 641 ntBASIC3.77□□□□□ -1.81
FOXA1P55317 NAP1L1P2-201ENST00000414182 1089 ntBASIC3.77□□□□□ -1.81
FOXA1P55317 RPL18P10-201ENST00000425606 538 ntBASIC3.77□□□□□ -1.81
FOXA1P55317 CASP12-204ENST00000433738 709 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
FOXA1P55317 NPM1P48-201ENST00000436002 853 ntBASIC3.77□□□□□ -1.81
FOXA1P55317 RN7SL93P-201ENST00000463035 293 ntBASIC3.77□□□□□ -1.81
FOXA1P55317 TRBV12-2-201ENST00000489763 344 ntBASIC3.77□□□□□ -1.81
FOXA1P55317 BACH1-IT1-201ENST00000504298 821 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
FOXA1P55317 AC004069.2-201ENST00000505438 1114 ntBASIC3.77□□□□□ -1.81
FOXA1P55317 THEM7P-202ENST00000525689 764 ntTSL 3 BASIC3.77□□□□□ -1.81
FOXA1P55317 AC084083.1-201ENST00000526947 722 ntTSL 5 BASIC3.77□□□□□ -1.81
FOXA1P55317 AC079598.1-201ENST00000548691 554 ntTSL 4 BASIC3.77□□□□□ -1.81
FOXA1P55317 AC022929.1-201ENST00000560675 823 ntTSL 3 BASIC3.77□□□□□ -1.81
FOXA1P55317 KPNA2P3-201ENST00000584190 848 ntBASIC3.77□□□□□ -1.81
FOXA1P55317 AC011477.5-201ENST00000586571 259 ntBASIC3.77□□□□□ -1.81
FOXA1P55317 RPS4XP16-203ENST00000596904 698 ntTSL 5 BASIC3.77□□□□□ -1.81
FOXA1P55317 AL161912.3-201ENST00000605404 628 ntBASIC3.77□□□□□ -1.81
FOXA1P55317 AC015849.6-201ENST00000605454 474 ntBASIC3.77□□□□□ -1.81
FOXA1P55317 AC092683.2-201ENST00000619740 621 ntTSL 3 BASIC3.77□□□□□ -1.81
FOXA1P55317 AP003072.5-201ENST00000623872 773 ntBASIC3.77□□□□□ -1.81
FOXA1P55317 ATE1-AS1-202ENST00000636460 506 ntBASIC3.77□□□□□ -1.81
FOXA1P55317 FAM126B-202ENST00000418596 9333 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
FOXA1P55317 MYCT1-201ENST00000367245 3030 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
FOXA1P55317 ADAM29-211ENST00000514159 3010 ntAPPRIS P1 TSL 4 BASIC3.77□□□□□ -1.81
FOXA1P55317 RPS6KA6-204ENST00000620340 8169 ntTSL 5 BASIC3.77□□□□□ -1.81
FOXA1P55317 BMPR1B-203ENST00000440890 5388 ntTSL 2 BASIC3.77□□□□□ -1.81
FOXA1P55317 LGI1-210ENST00000629035 2251 ntTSL 5 BASIC3.77□□□□□ -1.81
FOXA1P55317 SLCO1C1-208ENST00000545102 2868 ntTSL 2 BASIC3.77□□□□□ -1.81
FOXA1P55317 NEGR1-201ENST00000306821 5577 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
FOXA1P55317 MYOZ2-201ENST00000307128 2597 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
FOXA1P55317 ZNF92-204ENST00000450302 2957 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
FOXA1P55317 PATE1-201ENST00000305738 1527 ntAPPRIS P2 TSL 1 (best) BASIC3.76□□□□□ -1.81
FOXA1P55317 ZNF480-202ENST00000335090 2722 ntTSL 3 BASIC3.76□□□□□ -1.81
FOXA1P55317 ETV1-202ENST00000399357 6096 ntTSL 2 BASIC3.76□□□□□ -1.81
FOXA1P55317 SLAMF6-201ENST00000368055 730 ntTSL 2 BASIC3.76□□□□□ -1.81
FOXA1P55317 MIR137-201ENST00000385223 102 ntBASIC3.76□□□□□ -1.81
FOXA1P55317 SNORA81-201ENST00000408493 178 ntBASIC3.76□□□□□ -1.81
FOXA1P55317 AC079630.1-201ENST00000412812 585 ntTSL 4 BASIC3.76□□□□□ -1.81
FOXA1P55317 AC092017.2-201ENST00000427600 362 ntBASIC3.76□□□□□ -1.81
FOXA1P55317 AL139327.2-202ENST00000437057 400 ntTSL 3 BASIC3.76□□□□□ -1.81
FOXA1P55317 AC092809.1-201ENST00000441469 474 ntBASIC3.76□□□□□ -1.81
FOXA1P55317 LINC01828-201ENST00000445514 531 ntTSL 4 BASIC3.76□□□□□ -1.81
FOXA1P55317 AL160408.1-203ENST00000453568 631 ntTSL 5 BASIC3.76□□□□□ -1.81
FOXA1P55317 FGF7P3-201ENST00000454645 303 ntBASIC3.76□□□□□ -1.81
FOXA1P55317 UBA52P3-201ENST00000491303 382 ntBASIC3.76□□□□□ -1.81
FOXA1P55317 HHIP-AS1-203ENST00000512359 646 ntTSL 3 BASIC3.76□□□□□ -1.81
FOXA1P55317 MTCYBP19-201ENST00000517463 1124 ntBASIC3.76□□□□□ -1.81
FOXA1P55317 RAD21-203ENST00000517749 1003 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
FOXA1P55317 AC099805.1-203ENST00000518177 773 ntTSL 2 BASIC3.76□□□□□ -1.81
FOXA1P55317 NARSP2-201ENST00000518524 679 ntBASIC3.76□□□□□ -1.81
FOXA1P55317 RAB9BP1-201ENST00000519581 626 ntBASIC3.76□□□□□ -1.81
FOXA1P55317 NDUFA5P2-201ENST00000519723 344 ntBASIC3.76□□□□□ -1.81
FOXA1P55317 AC034205.1-201ENST00000520621 638 ntBASIC3.76□□□□□ -1.81
FOXA1P55317 AC090993.1-201ENST00000522460 582 ntTSL 3 BASIC3.76□□□□□ -1.81
FOXA1P55317 OPRM1-223ENST00000524163 1251 ntAPPRIS ALT1 TSL 1 (best) BASIC3.76□□□□□ -1.81
FOXA1P55317 AP006287.2-201ENST00000529036 502 ntTSL 2 BASIC3.76□□□□□ -1.81
FOXA1P55317 AC107918.3-201ENST00000533272 382 ntBASIC3.76□□□□□ -1.81
FOXA1P55317 AL133166.1-205ENST00000548306 569 ntTSL 4 BASIC3.76□□□□□ -1.81
FOXA1P55317 AF123462.1-201ENST00000554307 446 ntTSL 3 BASIC3.76□□□□□ -1.81
FOXA1P55317 AC010547.7-201ENST00000570323 333 ntBASIC3.76□□□□□ -1.81
FOXA1P55317 ZNF562-205ENST00000587392 583 ntTSL 2 BASIC3.76□□□□□ -1.81
FOXA1P55317 SLC14A2-AS1-204ENST00000592899 359 ntTSL 3 BASIC3.76□□□□□ -1.81
FOXA1P55317 EIF1P6-201ENST00000600054 334 ntBASIC3.76□□□□□ -1.81
FOXA1P55317 AC096553.1-201ENST00000605169 829 ntBASIC3.76□□□□□ -1.81
FOXA1P55317 AC107419.1-202ENST00000608735 1081 ntTSL 3 BASIC3.76□□□□□ -1.81
FOXA1P55317 OR8H1-202ENST00000610894 927 ntAPPRIS ALT1 BASIC3.76□□□□□ -1.81
FOXA1P55317 Metazoa_SRP.193-201ENST00000622007 277 ntBASIC3.76□□□□□ -1.81
FOXA1P55317 UTRN-204ENST00000367545 12339 ntAPPRIS P1 TSL 5 BASIC3.76□□□□□ -1.81
FOXA1P55317 RAP1GDS1-205ENST00000408927 3681 ntAPPRIS P3 TSL 2 BASIC3.76□□□□□ -1.81
FOXA1P55317 LINC00561-201ENST00000565815 2738 ntBASIC3.76□□□□□ -1.81
FOXA1P55317 TOPORSLP1-201ENST00000467693 2102 ntBASIC3.76□□□□□ -1.81
FOXA1P55317 ART3-202ENST00000349321 1528 ntAPPRIS P3 TSL 1 (best) BASIC3.75□□□□□ -1.81
FOXA1P55317 NR3C1-206ENST00000424646 4591 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
FOXA1P55317 RAPGEF6-201ENST00000296859 5618 ntAPPRIS ALT2 TSL 1 (best) BASIC3.75□□□□□ -1.81
FOXA1P55317 SGO1-AS1-203ENST00000455626 2041 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
FOXA1P55317 CCDC110-202ENST00000393540 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC3.75□□□□□ -1.81
FOXA1P55317 SCN3A-209ENST00000639244 8854 ntTSL 5 BASIC3.75□□□□□ -1.81
FOXA1P55317 MMRN1-204ENST00000508372 3234 ntTSL 2 BASIC3.75□□□□□ -1.81
FOXA1P55317 AP002001.2-201ENST00000529025 1469 ntBASIC3.75□□□□□ -1.81
FOXA1P55317 LINC01094-203ENST00000504675 1985 ntTSL 2 BASIC3.75□□□□□ -1.81
FOXA1P55317 CAB39L-206ENST00000410043 1627 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
FOXA1P55317 CASC19-261ENST00000641853 1638 ntBASIC3.75□□□□□ -1.81
FOXA1P55317 MS4A14-201ENST00000300187 2997 ntAPPRIS P3 TSL 1 (best) BASIC3.75□□□□□ -1.81
FOXA1P55317 ANP32E-202ENST00000369115 708 ntTSL 3 BASIC3.75□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 80.4 ms