Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 AFF2-IT1-201ENST00000435346 443 ntTSL 5 BASIC4.04□□□□□ -1.76
LIM2P55344 LINC00280-201ENST00000439525 448 ntTSL 2 BASIC4.04□□□□□ -1.76
LIM2P55344 ACTR3P2-201ENST00000439585 1257 ntBASIC4.04□□□□□ -1.76
LIM2P55344 H2AFZP6-201ENST00000444403 394 ntBASIC4.04□□□□□ -1.76
LIM2P55344 PLCE1-AS2-205ENST00000453183 427 ntTSL 5 BASIC4.04□□□□□ -1.76
LIM2P55344 AC104831.1-201ENST00000470024 444 ntTSL 3 BASIC4.04□□□□□ -1.76
LIM2P55344 UBE2D3-217ENST00000504211 578 ntTSL 2 BASIC4.04□□□□□ -1.76
LIM2P55344 AC021180.1-201ENST00000508581 558 ntTSL 4 BASIC4.04□□□□□ -1.76
LIM2P55344 AL592156.1-201ENST00000508758 304 ntBASIC4.04□□□□□ -1.76
LIM2P55344 LINC02358-201ENST00000514413 465 ntTSL 5 BASIC4.04□□□□□ -1.76
LIM2P55344 RNA5SP49-201ENST00000516450 115 ntBASIC4.04□□□□□ -1.76
LIM2P55344 RNA5SP73-201ENST00000516744 108 ntBASIC4.04□□□□□ -1.76
LIM2P55344 AC013714.1-201ENST00000524707 747 ntTSL 3 BASIC4.04□□□□□ -1.76
LIM2P55344 LINC02386-201ENST00000551202 509 ntTSL 3 BASIC4.04□□□□□ -1.76
LIM2P55344 AC007906.1-201ENST00000568648 510 ntTSL 5 BASIC4.04□□□□□ -1.76
LIM2P55344 NUFIP2-202ENST00000579665 559 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
LIM2P55344 AP001542.3-201ENST00000587619 527 ntTSL 5 BASIC4.04□□□□□ -1.76
LIM2P55344 AL137072.1-201ENST00000603444 466 ntBASIC4.04□□□□□ -1.76
LIM2P55344 OR4H6P-202ENST00000603819 340 ntBASIC4.04□□□□□ -1.76
LIM2P55344 AC233280.2-201ENST00000603917 1070 ntBASIC4.04□□□□□ -1.76
LIM2P55344 LINC00397-202ENST00000606785 409 ntTSL 5 BASIC4.04□□□□□ -1.76
LIM2P55344 AC004775.1-201ENST00000607389 753 ntBASIC4.04□□□□□ -1.76
LIM2P55344 AL023583.1-201ENST00000607518 1143 ntBASIC4.04□□□□□ -1.76
LIM2P55344 AP000843.1-201ENST00000624880 701 ntBASIC4.04□□□□□ -1.76
LIM2P55344 CNTN5-212ENST00000619298 5734 ntTSL 5 BASIC4.04□□□□□ -1.76
LIM2P55344 AL591441.1-201ENST00000618108 2247 ntTSL 2 BASIC4.04□□□□□ -1.76
LIM2P55344 CNOT1-201ENST00000317147 8471 ntAPPRIS P3 TSL 1 (best) BASIC4.04□□□□□ -1.76
LIM2P55344 C12orf45-204ENST00000552951 23529 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
LIM2P55344 SYNE2-203ENST00000357395 21555 ntTSL 5 BASIC4.04□□□□□ -1.76
LIM2P55344 NOL8P1-201ENST00000508336 3529 ntBASIC4.04□□□□□ -1.76
LIM2P55344 ENPP2-202ENST00000259486 3233 ntAPPRIS P3 TSL 1 (best) BASIC4.04□□□□□ -1.76
LIM2P55344 MYB-226ENST00000528774 2277 ntAPPRIS ALT1 TSL 1 (best) BASIC4.04□□□□□ -1.76
LIM2P55344 ZNF700-202ENST00000482090 3113 ntAPPRIS ALT2 TSL 2 BASIC4.04□□□□□ -1.76
LIM2P55344 MAPK10-304ENST00000641341 3984 ntBASIC4.04□□□□□ -1.76
LIM2P55344 MYNN-202ENST00000356716 2833 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
LIM2P55344 CCT8P1-201ENST00000413611 1657 ntBASIC4.03□□□□□ -1.76
LIM2P55344 Z95327.2-201ENST00000414579 1873 ntBASIC4.03□□□□□ -1.76
LIM2P55344 LINC02458-201ENST00000500381 2941 ntTSL 2 BASIC4.03□□□□□ -1.76
LIM2P55344 ATXN3-207ENST00000503767 1315 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
LIM2P55344 VEZT-201ENST00000261219 3435 ntTSL 5 BASIC4.03□□□□□ -1.76
LIM2P55344 ZNF43-207ENST00000595461 3399 ntAPPRIS ALT2 TSL 1 (best) BASIC4.03□□□□□ -1.76
LIM2P55344 DYTN-201ENST00000452335 2051 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
LIM2P55344 GKN2-201ENST00000328895 800 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
LIM2P55344 RNA5SP366-201ENST00000365454 123 ntBASIC4.03□□□□□ -1.76
LIM2P55344 DPRX-201ENST00000376650 648 ntAPPRIS P1 TSL 3 BASIC4.03□□□□□ -1.76
LIM2P55344 MIR513A2-201ENST00000385249 127 ntBASIC4.03□□□□□ -1.76
LIM2P55344 LSM5-205ENST00000409952 687 ntTSL 4 BASIC4.03□□□□□ -1.76
LIM2P55344 LSM5-206ENST00000409987 504 ntTSL 5 BASIC4.03□□□□□ -1.76
LIM2P55344 RNA5SP296-201ENST00000410523 111 ntBASIC4.03□□□□□ -1.76
LIM2P55344 AC016397.1-201ENST00000412463 242 ntBASIC4.03□□□□□ -1.76
LIM2P55344 GAPDHP49-201ENST00000421421 961 ntBASIC4.03□□□□□ -1.76
LIM2P55344 DNAJA1P1-201ENST00000425106 1187 ntBASIC4.03□□□□□ -1.76
LIM2P55344 AL160175.1-201ENST00000428124 247 ntBASIC4.03□□□□□ -1.76
LIM2P55344 MTND4LP7-201ENST00000431728 294 ntBASIC4.03□□□□□ -1.76
LIM2P55344 MTND4P15-201ENST00000437913 1033 ntBASIC4.03□□□□□ -1.76
LIM2P55344 LINC01307-202ENST00000444327 771 ntTSL 2 BASIC4.03□□□□□ -1.76
LIM2P55344 KRTAP21-3-201ENST00000444335 253 ntAPPRIS P1 BASIC4.03□□□□□ -1.76
LIM2P55344 AC006326.1-201ENST00000445465 787 ntBASIC4.03□□□□□ -1.76
LIM2P55344 CASP3P1-201ENST00000446037 609 ntBASIC4.03□□□□□ -1.76
LIM2P55344 MTND2P25-201ENST00000449028 610 ntBASIC4.03□□□□□ -1.76
LIM2P55344 AL353718.1-201ENST00000451028 517 ntBASIC4.03□□□□□ -1.76
LIM2P55344 HMGB1P26-201ENST00000452520 628 ntBASIC4.03□□□□□ -1.76
LIM2P55344 RPS20P4-201ENST00000461659 355 ntBASIC4.03□□□□□ -1.76
LIM2P55344 AC108145.1-201ENST00000503770 153 ntBASIC4.03□□□□□ -1.76
LIM2P55344 MTCO1P31-201ENST00000506355 492 ntBASIC4.03□□□□□ -1.76
LIM2P55344 COL6A4P2-205ENST00000509855 506 ntBASIC4.03□□□□□ -1.76
LIM2P55344 AC008958.1-201ENST00000511047 682 ntBASIC4.03□□□□□ -1.76
LIM2P55344 LINC00500-201ENST00000515860 539 ntTSL 4 BASIC4.03□□□□□ -1.76
LIM2P55344 RNA5SP519-201ENST00000516480 119 ntBASIC4.03□□□□□ -1.76
LIM2P55344 RNU6-1308P-201ENST00000516817 103 ntBASIC4.03□□□□□ -1.76
LIM2P55344 AC103833.1-201ENST00000517442 172 ntBASIC4.03□□□□□ -1.76
LIM2P55344 AC008632.1-202ENST00000518605 452 ntTSL 3 BASIC4.03□□□□□ -1.76
LIM2P55344 AC090193.1-201ENST00000518633 543 ntTSL 4 BASIC4.03□□□□□ -1.76
LIM2P55344 PAFAH1B2-206ENST00000530272 850 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
LIM2P55344 THEMIS-204ENST00000537166 3830 ntAPPRIS ALT2 TSL 2 BASIC4.03□□□□□ -1.76
LIM2P55344 NOP56P3-201ENST00000549457 385 ntBASIC4.03□□□□□ -1.76
LIM2P55344 AC107032.2-201ENST00000551082 386 ntTSL 3 BASIC4.03□□□□□ -1.76
LIM2P55344 AC128707.1-201ENST00000552230 494 ntTSL 3 BASIC4.03□□□□□ -1.76
LIM2P55344 CKS1BP1-201ENST00000555221 240 ntBASIC4.03□□□□□ -1.76
LIM2P55344 AC233266.2-201ENST00000567067 528 ntBASIC4.03□□□□□ -1.76
LIM2P55344 CBX3P2-202ENST00000583365 535 ntBASIC4.03□□□□□ -1.76
LIM2P55344 AC096553.1-201ENST00000605169 829 ntBASIC4.03□□□□□ -1.76
LIM2P55344 AC015813.4-201ENST00000610469 179 ntBASIC4.03□□□□□ -1.76
LIM2P55344 FAM27D1-201ENST00000612308 341 ntBASIC4.03□□□□□ -1.76
LIM2P55344 AC092683.2-203ENST00000618807 788 ntTSL 5 BASIC4.03□□□□□ -1.76
LIM2P55344 THRA1/BTR-204ENST00000621191 513 ntTSL 5 BASIC4.03□□□□□ -1.76
LIM2P55344 AC007342.8-201ENST00000623278 678 ntBASIC4.03□□□□□ -1.76
LIM2P55344 AL589740.1-204ENST00000634677 630 ntTSL 4 BASIC4.03□□□□□ -1.76
LIM2P55344 AL163152.1-201ENST00000642001 374 ntBASIC4.03□□□□□ -1.76
LIM2P55344 LRRC9-202ENST00000445360 4717 ntAPPRIS P1 TSL 5 BASIC4.03□□□□□ -1.76
LIM2P55344 ZMYM6-201ENST00000317538 2702 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
LIM2P55344 OR5H14-202ENST00000641380 7323 ntAPPRIS P1 BASIC4.03□□□□□ -1.76
LIM2P55344 TAOK3-202ENST00000419821 4301 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
LIM2P55344 STON1-GTF2A1L-202ENST00000394754 3824 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
LIM2P55344 ING3-201ENST00000315870 3777 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
LIM2P55344 RC3H1-202ENST00000367694 3775 ntAPPRIS ALT1 TSL 2 BASIC4.03□□□□□ -1.76
LIM2P55344 PLCB1-233ENST00000637919 5074 ntTSL 5 BASIC4.02□□□□□ -1.77
LIM2P55344 RACGAP1-202ENST00000427314 3229 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
LIM2P55344 CD200R1-204ENST00000471858 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC4.02□□□□□ -1.77
LIM2P55344 RIMS1-212ENST00000517827 3065 ntTSL 2 BASIC4.02□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 118 ms